Life Sciences Commons^™

Utah State University’S Water Legacy, Brad Mortensen

Spring Runoff Conference

Utah State University's President, Brad Mortensen, presents at the 2026 Spring Runoff Conference.

Fisheries Occasional Publication No. 151 - Response To 2025 External Review Of Integrated Stock Assessments For Key Wa Demersal Indicator Stocks, Brett Crisafulli, Emily A. Fisher, Matias Braccini, Rubie Evans-Powell, Fabian I. Trinnie, Ainslie Denham, S. A. Hesp

Fisheries Occasional Publications

Consistent with national trends, the Department of Primary Industries and Regional Development (DPIRD) is transitioning to the globally recognised Stock Synthesis (SS) platform to support more robust, transparent, and internationally aligned assessments. To ensure this transition remains scientifically sound, DPIRD commissioned an independent expert review in 2025, following a previous review in 2024. The 2025 review was conducted by Professor André Punt and focused on integrated models for three key WA fish stocks: red emperor in the Kimberley, WA dhufish in the southern West Coast Bioregion, and sandbar shark at the statewide level. This publication summarises the findings and recommendations …

Supplemental Data For Gulf Coast Walleye Edna Survey, Kevin W. Jones

Research Data

This file contains the full eDNA collection and amplification dataset for:

Jones, K.W. (2026). Development and application of an eDNA protocol for the detection of Gulf Coast Walleye (Sander vitreus) in Mississippi [Thesis submitted for publication]. Department of Wildlife, Fisheries, and Aquaculture, Mississippi State University.

Is Precision Agriculture Technology Adoption Persistently Overestimated?, Trey Malone, Chad Fiechter, Zanliang Meng, James Lowenberg‐Deboer, Bruce Erickson, Jay Akridge

Department of Agricultural Economics Faculty Publications

Precision agriculture is sometimes assumed to diffuse steadily over time, and industry planning frequently extrapolates early adoption trends forward. This study evaluates the accuracy of such expectations by comparing agricultural input dealers' forecasts of future service offerings with the actual levels of offerings that dealerships eventually provided. Using 21 waves of the CropLife-Purdue Precision Agriculture Dealership Survey from 2000 to 2025, we examine expected and realized precision agriculture offerings across 26 technologies. We document systematic and persistent overestimation of adoption: for most technologies, expected diffusion exceeds realized outcomes, with forecast errors becoming especially pronounced as adoption flattened or declined in …

The Evolution Of Self-Awareness In Conscious Organisms, Robert A. Dielenberg

Journal of Conscious Evolution

Self-awareness in conscious organisms remains an enduring puzzle for philosophers and neuroscientists. This paper proposes a tripartite evolutionary model tracing its emergence through three sequential types: the sensory self (primitive egocentric, valence-tagged awareness of sensory states), the bodily self (external objectification of the body as a distinct entity, evidenced by mirror self-recognition in select species), and the cognitive self (internal objectification of the mind enabling recursive self-transformation). Adopting a monist framework, the model treats consciousness as the biological substrate of delayed neural apperception (the “Delayed Present”), within which selves emerge as increasingly sophisticated models. It distinguishes non-human metacognition—implicit, online regulation—from …

Broccoli Yield Following Varying Ratios Of Barley And Pea Cover Crop Mixtures, Jesen Hosch, Charlie Rohwer

Midwest Vegetable Trial Reports

While cover crops can provide a variety of services to farmers, there is debate about the benefit of cover crop mixtures compared to monocultures. A barley monoculture, a pea monoculture, and varying ratios of a barley-pea cover crop mixture were planted in spring before broccoli and under-fertilized with nitrogen. Though both broccoli yield and head weight had a positive relationship with the percent peas in a mixture, a fallow control was similar to all treatments but the barley monoculture, which resulted in the lowest yield and head size.

Bio 230 - Microbiology, Sarah Moroianu

Open Educational Resources

This open educational resource (OER) syllabus is designed for BIO 230: Microbiology at Lehman College, City University of New York (CUNY), a single-semester introductory microbiology course for non-biology majors such as Nursing, Dietetics, Health Education, and Physical Education. The course reviews microbial structure, metabolism, genetics, and microbial ecology, with applied emphasis on infectious disease, antimicrobial drugs, host immune defenses, and microbial diseases. The syllabus aligns course content with the freely available OpenStax Microbiology textbook (Parker et al., CC BY 4.0) and reflects accessibility best practices consistent with CUNY guidelines.

The Molecular Determinants Of Deglycation And Substrate Specificity In Fructosamine Kinases, Jenet Matlack

USF Tampa Graduate Theses and Dissertations

Protein glycation is a universal, non-enzymatic modification that occurs when a sugar covalently attaches to a primary amine. These spontaneous modifications may have deleterious or regulatory effects on protein function, and their removal is mediated by the conserved metabolic kinase fructosamine-3-kinase (FN3K). Despite its crucial role in protein repair, we currently have a poor understanding of how FN3K engages or phosphorylates its substrates. Additionally, the molecular basis for the distinct yet overlapping substrate specificities of FN3K and its paralog, ketosamine-3 kinase (KT3K), remains unresolved. By integrating structural biology, biochemistry, and ancestral protein reconstruction (APR), this thesis elucidates the catalytic mechanism …

Drone Based Operational Cloud Seeding, Jared Smith

Spring Runoff Conference

Cloud Seeding: Next Generation Operations and Validation

What is Winter Cloud Seeding? 

• The act of introducing favorable dust particles into a cloud to promote ice crystal nucleation 
• Requires naturally occurring clouds and cold temperatures 
• Aimed at enhancing winter snowpack

Great Salt Lake Basin Integrated Plan – Longterm Actions, Jake M. Serago

Spring Runoff Conference

GSL’s water level is in long-term decline. Water users face shortages and challenges. Increased temperatures, greater precipitation extremes and population changes are stressing water supplies in the basin. 84% of Utah residents think the Government is accountable for resolving issues facing GSL.

Agricultural Water Leasing Opportunities & Updates, Hannah Freeze

Spring Runoff Conference

The framework for this leasing program is based on depletion savings from conservation practices not surplus or tailwater

Pheasant Forever Loan Program, Will Benkelman

Spring Runoff Conference

Bear River Watershed Community Conservation Program

Our Mission: Pheasants Forever (PF) and Quail Forever’s (QF) mission is to conserve pheasants, quail, and other wildlife through habitat improvements, public access, education, and conservation advocacy.

Logan River Watershed Draft Environmental Impact Statement, Zan Murray

Spring Runoff Conference

Agenda:

Program Overview: PL-566 & NEPA

Project Need and Purpose

Project Alternatives

Preferred Alternative Costs and Benefits

NEPA Timeline/Current Schedule

Questions

Cache Water District Conservation Program, Autumn Matthews

Spring Runoff Conference

Conservation and Education Programs.

Conservation Goals:

Increase community awareness through outreach, workshops, and community programs that support water conservation.

Expand and improve programs that encourage water savings and more efficient water use across the community.

Help residents save money by promoting water efficiency and reducing unnecessary water use.

Water Supply Update, Jordan Clayton

Spring Runoff Conference

Snowpack and Water Supply Conditions.

>95% of the water we use in Northern Utah comes from snow. Therefore, it’s critically important to quantify how much water is stored in our snowpack.

Legislative Summary Panel, Brian Steed, Scott Sandall, Jill Koford, Joel Ferry

Spring Runoff Conference

Legislative updates provided at the Spring Runoff Conference 2026.

Water In 2026, Spencer Cox

Spring Runoff Conference

Presentation by Utah Governor Cox.

Mitochondrial Transfer And Induced Ros As A Therapeutic Strategy In Idh2-Mutant Chondrosarcoma, Vegas R. Bedder, Caleb Wyckoff, Chris Osgood, Gavin A. Vasquez, Michael Stacey

Knowledge and Creativity Expo

Chondrosarcoma (CS) are common bone cancers that produce cartilaginous tumors and are extremely refractive to chemo-and-radiation therapies, leaving very limited treatment options. They contain mutations in the isocitrate dehydrogenase genes, IDH1 or IDH2. Either IDH1 or IDH2 mutations are present in individual tumors, but not both. They both convert alphaketoglutarate (αKG) into the potent oncometabolite D-2-hydroxyglutarate (D2HG). D2HG can be transported from the tumors to cells of the tumor microenvironment (TME) where it can alter metabolic and epigenetic profiles in recipient cells. The process of α-KG to D2HG conversion occurs in the cytoplasm of IDH1 mutant cells, and in the …

Nexus Of Food Security Versus Armed Conflict In The Context Of Climate Change In Mali, Moussa Macalou, Youssouf Diabate, Abdoulaye Nientao, Adama B. Coulibaly

Professional Agricultural Workers Journal

The nexus between food security and armed conflict, with particular focus on developing countries, has been analyzed by a few studies in the literature. Every country under armed conflict is obligated to solve related food security issues. Therefore, the overall objective of this study was to analyze the nexus between households’ food security and armed conflicts in the context of climate change in Mali. To achieve this objective, first, the study used an ordinary least squares model to determine the factors influencing households’ food security. Second, it used an ordered logit model to determine the factors influencing armed conflict. Apart …

Artificial Intelligence In Mycology: A Systematic Review Of Species Identification, Biotechnological Assessment, And Explainable Deep Learning Methods, Fati̇h Eki̇nci̇, Mehmet Serdar Güzel, Ilgaz Akata

Turkish Journal of Botany

This review offers a comprehensive analysis of the expanding role of artificial intelligence (AI) in mycological research. It highlights how AI supports the identification of fungal taxa at both microscopic and macroscopic levels, facilitates the detection of toxic species, contributes to ecological mapping, aids in discovering new fungal bioproducts, and enhances precision agriculture practices. Advanced techniques such as convolutional neural networks, you only look once, U-shaped network (UNet), and residual network have demonstrated strong performance in classification, segmentation, and object detection tasks. Additionally, explainable AI (XAI) methods like gradient-weighted class activation mapping (Grad-CAM), local interpretable model-agnostic explanations (LIME), and SHapley …

Global Transcriptomic Insights Into Nla-Dependent Boron Toxicity Responses In Arabidopsis Thaliana, Doğa Seli̇n Kayihan

Turkish Journal of Botany

Boron (B) toxicity disrupts multiple metabolic and signaling processes in plants, yet its interaction with post-translational regulators remains poorly understood. The E3 ubiquitin ligase NITROGEN LIMITATION ADAPTATION (NLA) is known to control nutrient transporter turnover, but its role in B toxicity responses has not been previously characterized. Here, we present the first genome-wide transcriptomic analysis of nla mutant Arabidopsis thaliana exposed to mild (1 mM) and moderate (2 mM) B toxicity. Loss of NLA caused a profound reprogramming of gene expression, marked by constitutive activation of ribosome- and translation-related pathways and strong repression of MAPK signaling, α-linolenic acid metabolism, and …

Ethnobotanical Study Of Medicinal Plants Used By The Local Population In And Around Kozak Plateau (Bergama, İzmir, Türkiye), Şükrü Arasan, Hasan Yildirim

Turkish Journal of Botany

This research was conducted between 2020 and 2022 in 21 villages located on the Kozak Plateau and its surroundings, in the Bergama district of İzmir province, Türkiye. The main aim of the study is to document the medicinal uses of plants by the local population and to contribute to the preservation and transmission of ethnobotanical knowledge—passed down through generations— to future generations before it disappears. Interviews were conducted with 159 informants, and the traditional medicinal uses of 126 plant taxa belonging to 54 families were identified. Among these, the therapeutic uses of 37 taxa were recorded for the first time. …

Insights Into The Role Of Sox6 In The Developing Heart, Hannah Tarolli

MUSC Theses and Dissertations

Approximately 40,000 babies born each year in the U.S. have a congenital heart defect (CHD). However, only a small percentage of CHDs has a known genetic cause, highlighting the need for research surrounding heart development and the pathogenesis of CHDs. Heart development research aims to elucidate the precise coordination of gene expression and cell signaling with the goal of advancing prevention and treatment methods. During heart development, cells from several origins play a crucial role. This includes cells derived from the endocardium, epicardium, cardiac neural crest, and second heart field. Previous studies have revealed that the transcription factor, SOX9, is …

Bacillus Subtilis Parb C-Terminal Lysine Residues Are Essential For Dimerization And In Vivo Function, Indicating Their Roles In Dna Sliding, Aleksey Aleshintsev, Lindsey E. Way, Ngoc Khanh Lai, Bianca Guerra, Paloma Dorantes, Lois Akosua Serwaa, Sealtiel Anulao, Miranda Molina, Xindan Wang, Hyeongjun Kim

Physics & Astronomy Faculty Publications

The broadly conserved ParB protein performs crucial functions in bacterial chromosome segregation and replication regulation. The cellular function of ParB requires it to dimerize, recognize parS DNA sequences, clamp on DNA, then slide to adjacent sequences through nonspecific DNA binding. How ParB coordinates nonspecific DNA binding and sliding remains elusive. Here, we combine multiple in vitro biophysical and computational tools and in vivo approaches to address this question. We found that five conserved lysine residues in the C-terminal domain (CTD) of ParB play distinct roles. While the two central rigid lysine residues provide the structural platform for the CTD, the …

Determination Of High-Temperature Stress Tolerance In Strawberry Varieties Based On Physiological And Biochemical Mechanisms, Izhar Ullah, Hüsnü Demi̇rsoy, Musa Kavas, Kubi̇lay Yildirim, Leyla Demi̇rsoy

Turkish Journal of Botany

Rising global temperatures due to climate change threaten optimal strawberry growth and sustainable yields. Limited data exist on the physiological and biochemical responses of strawberry cultivars to high-temperature stress and their tolerance mechanisms. T his study evaluated the responses of 21 day-neutral and short-day strawberry cultivars to high-temperature stress and classified their tolerance levels using a novel weighted rating method. Plants were grown in 15-cm plastic pots (3:1:1 garden soil, peat, perlite) under open-field conditions until the 3–4 leaf stage and then transferred to climate chambers. After acclimatization at 25/15 °C (day/night) for 2 weeks, the plants were subjected to …

Functional Trait Structure In A Plant Community In Central Anatolian Steppe, Cansu Ülgen, Zeynep Ladi̇n Coşgun, Bariş Özüdoğru, Çağatay Tavşanoğlu

Turkish Journal of Botany

Exploring the trait structure of grassland plant communities enhances our understanding of how these communities will respond to climate change and disturbances such as herbivory. The trait structure of a plant community was investigated in the Central Anatolian steppe, an ecoregion with high biodiversity that has been largely unexplored in terms of plant functional ecology. Fifty plant species in the community were measured across 9 plant traits, including several leaf traits (leaf area, leaf dry matter content, specific leaf area, leaf thickness, and leaf nitrogen content), two seed traits (seed mass and seed shape), as well as the plant height …

Advancing The Alabama Black Belt Food Corridor: A Stakeholder-Driven Approach Through The Alabama Black Belt Food Systems Alliance, Kristin Woods, Tana Shealey

Professional Agricultural Workers Journal

A convergence of factors led to the need to bring together a diverse group of stakeholders to empower small-scale farmers in the Alabama Black Belt Region to safely scale up operations and access new markets. In the aftermath of the COVID-19 pandemic, there is renewed interest from government, producers, and consumers in strengthening local and regional food systems. This has led to a greater number of wholesale and retail market opportunities for farmers in the region. A newly formed Alabama Black Belt Food Systems Alliance (ABBFSA) endeavored to gather stakeholders to advance the Black Belt Food Corridor (BBFC) food system. …

Environmental Inequities In Conservation Policies And Practices: A Brief Overview, Monyai Chavers

Professional Agricultural Workers Journal

Conservation science and practice mirror racist notions of colonialism, prolonging a cycle in which policies and programs disregard land access. Many conservation leaders operate from a culture of land exclusion, focusing on nature to generate wealth, deeming the number of individuals removed from the commons as progress. By the turn of the 21^st Century, government conservation policies compensated private actors and groups for voluntarily adopting market-based mechanisms aimed at land conservation. Despite the emergence of various conservation programs, the data show that White Americans primarily benefit from federal conservation payments. However, the fragmentation of Black land ownership allows the …

Comparison Of Heavy Metal Accumulation In Soil And Wood Core Within Tallassee And Tuskegee, Alabama, Alicia R. Wilson, Brianna Smith, Latricia Miller, Rashidah Farid

Professional Agricultural Workers Journal

Heavy metals are natural components of the environment and can be relatively non-impactful in low concentrations. However, high concentrations of heavy metal toxicity can result in air, water, and soil contamination that adversely impacts environmental, human, and wildlife health. This study focuses on detecting the presence of heavy metals in soil, Loblolly Pine tree bark, and wood core samples from sites near a landfill in the Tallassee, Alabama, community and a post-agricultural site in Tuskegee, Alabama. It has been hypothesized that heavy metals are present in soil, tree bark, and the tree’s wood core from sampling sites. Samples were taken …

Impact Of In-Depth Adoption Of System Of Rice Intensification On Food Security Of Smallholder Farm Households In Mali, Moussa Macalou, John Baptist D. Jatoe

Professional Agricultural Workers Journal

The system of rice intensification (SRI) was implemented in Mali to boost rice productivity. The objectives of this paper are to identify the constraints faced by SRI adopters, estimate the food security index, and assess the impact of in-depth adoption of SRI on smallholder farm households’ food security. The study uses Kendall’s ranking to rank the six main constraints identified from the literature. The study uses the Household Food Insecurity Access Scale to estimate households’ food security index. Using primary data collected on rice farm households, the study combines the multivalued treatment effect inverse probability weighted regression adjustment and the …