Life Sciences Commons^™

Trace Dna Detection Using Diamond Dye: A Recovery Technique To Yield More Dna, Leah Davis

Master's Theses

This study aspires to find a new screening approach to trace DNA recovery techniques to yield a higher quantity of trace DNA from larger items of evidence. It takes the path of visualizing trace DNA on items of evidence with potential DNA so analysts can swab a more localized area rather than attempting to recover trace DNA through the general swabbing technique currently used for trace DNA recovery. The first and second parts consisted of observing trace DNA interaction with Diamond Dye on porous and non-porous surfaces.

The third part involved applying the Diamond Dye solution by spraying it onto …

Program And Proceedings: Nebraska Academy Of Sciences 1880–2023, 143rd Anniversary Year, One Hundred-Thirty-Third Annual Meeting, April 21, 2023

Nebraska Academy of Sciences: Programs and Proceedings

Program

Aeronautics and Space Science

Humans Past and Present

Applied Science and Technology Section

Biology

Biomedical Sciences

Chemistry

Earth Sciences

Environmental Science

Physics

Science Education

2023 Maiben Lecture: Jason Bartz

2023 Friend of Science Award: Ray Ward and Jim Lewis

Studies Of The Reaction Of Rongalite With Epoxides, Anuj Aryal

Theses, Dissertations and Culminating Projects

Reactions between Rongalite (Na⁺O^-SOCH₂OH) and epoxides were studied with the aim of developing new synthetic routes for the procurement of sulfone diols. This class of compounds contains essential building blocks in the construction of sulfur heterocycles, which have been implied in the development of several medicinal compounds. Thus far, the desired diols have not been isolated. During control experiments with bromo alcohols, an unknown product was isolated but remains to be identified.

Environmental Drivers Of Stress In Red Pandas (Ailurus Fulgens) : Behavior And Space Use Changes In Response To Redesigned Naturalistic Enclosures, Alexis Michelle Lawson

Theses, Dissertations and Culminating Projects

Animal welfare encompasses the physical and mental state of an animal, as well as how that animal is cared for. Recently, zoological settings have shifted from strictly housing animals to improving the welfare of the animal such that the goal of captivity is for residents to thrive. This is especially crucial as global wildlife numbers and biodiversity continues to decrease due to anthropogenic impacts such as poaching, mining, habitat destruction, fragmentation. Further confounding this issue is climate change, air pollution, invasive species, ocean acidification, and more. In particular, the red panda (Ailurus fulgens) is an endangered species whose declined 50% …

Effects Of Guest Interactions On Cownose Ray (Rhinoptera Bonasus) Behavior In A Zoo Touch Tank, Lauren Hope

Theses, Dissertations and Culminating Projects

Touch tanks are increasingly popular exhibits at zoos and aquariums, and are at the center of scientific engagement with the public. Touch tanks can provide benefits to marine species through conservation outreach and research, and to guests through education, recreation, and stress reduction. Cownose rays are a popular species found in touch tanks due to their putative stress tolerance and docile nature. Yet, questions remain about ray tolerance to captivity, and studies are rare on their behavioral responses to touch tank environments and guest interactions. Here, I used an observational study to examine: (1) baseline ray behavior in a touch …

The Characterization Of Minicoopr Cell Line Clones For The Expression Of Wild Type Form Of Icer, Samantha Moscoso

Theses, Dissertations and Culminating Projects

The transcriptional repressor Inducible cyclic-AMP Early Repressor (ICER) is an isoform of the cAMP-responsive element modulator (CREM) gene. ICER protein has tumor suppressor activity by regulating cAMP-induced transcription. ICER has been found to be effective in providing an anti-tumor effect when in many tumors including melanomas. Melanoma is an aggressive type of skin cancer that begins when there is an overproduction of melanocytes. Using a zebrafish model for melanoma, our laboratory has recently demonstrated that zebrafish that are expressing ICER in their melanocytes succumbed to malignancies at a much faster rate than the control Green Fluorescent protein (GFP)- expressing fish. …

Neural Correlates Of Sub-Clinical Grandiose Cluster B Personality Disorders, Adriana Lavarco

Theses, Dissertations and Culminating Projects

The Cluster B personality disorders (PDs) include antisocial personality disorder (ASPD), borderline personality disorder (BPD), narcissistic personality disorder (NPD), and histrionic personality disorder (HPD). With impulsivity being a commonly shared symptom across the cluster B personality disorders, specifically in BPD, the right and left dorsolateral prefrontal cortex (DLPFC) was targeted for TMS. Since these personality disorders are grouped together due to their shared ‘dramatic’ characteristics, the current study aimed to investigate the effects of transcranial magnetic stimulation (TMS) on the presence of cluster B personality disorder traits in 13 healthy participants. We found that there is a significant decrease in …

Social Exclusion : How Inhibition And Excitation Of The Dorsal Lateral Prefrontal Cortex (Dlpfc) Influences Feelings Of Social Exclusion, Anthony Minervini

Theses, Dissertations and Culminating Projects

Social exclusion refers to the experience of rejection by one or more people during a social event. Cyberball, a computer program, is one of the most common tools for analyzing social exclusion. Cyberball simulates a game of catch in which any number of individuals or computer- generated players can pass a virtual ball to one another. Regions of the brain that underlies pain perception include networks lined to the Dorsal Lateral Prefrontal Cortex (DLPFC). Direct manipulation of this area may provide a better understanding of how the DLPFC can influence the perception of social exclusion. Transcranial magnetic stimulation (TMS) was …

Effects Of Time, Temperature, And Cooking Vessel On Antioxidant Potential, Ph, And Degrees Brix In The Processing Of Black Garlic, Victoria Gargano

Theses, Dissertations and Culminating Projects

Garlic, from the allium family, is known to contain organosulfur compounds. These compounds contain antioxidants, which provide a plethora of potential health benefits. Black garlic is created by processing regular garlic at temperatures ranging between 60-90°C, with high humidity for upwards of one month. The process of making black garlic alters these components, potentially increasing the antioxidant capacity. This end product yields a garlic that is a deep black color with a sweet flavor, pungent aroma, and a soft malleable texture. Black garlic is increasing popularity within the culinary world with more products making it to market shelves. PURPOSE: To …

Black Garlic Extract As An Antiviral For Herpes Simplex Virus-2 In Lung Cells, Jenna Rose Horowitz

Theses, Dissertations and Culminating Projects

Allicin, a sulfur compound, is known for providing garlic with its unique fragrance and taste, as well as for its antimicrobial properties. This is one of many antioxidant compounds found in garlic, along with polyphenols and flavonoids. When raw garlic is aged using high temperatures and high humidity levels, it develops a black color and a sweeter taste. Garlic in this form, referred to as black garlic, contains higher levels of antioxidants than fresh garlic. Antioxidants play a vital role in alleviating cellular stress during viral infections. Once a virus particle attaches and enters a host cell, a slew of …

Quality Determinates Of Rice Price In Open Bag Markets In Sub-Saharan Africa, Bailey Peterson-Wilhelm, Lawton Nalley, Alvaro Durand-Morat, Aaron Shew, Francis Tsiboe, Willy Mulimbi

Agricultural Economics and Agribusiness Faculty Publications and Presentations

Purpose

Weaknesses in the grades and standards system in low-income countries across Sub-Saharan Africa undermine the transparency of agricultural markets. In the Democratic Republic of the Congo (DRC), Ghana and Mozambique rice is predominately sold in open bags and if rice price does not reflect its quality, then inefficiencies may lead to consumer welfare losses. Importantly, it is possible that impoverished communities are priced out of the market due to inflated and inefficient prices. The objective of this study is to examine determinates of rice price by estimating the impact of selected rice quality attributes on rice prices in Democratic …

Pirna Expression In The Tube Feet Of Lytechinus Variegatus, Reagan Milliet

Honors Theses

Tissue regeneration is an area of research with implications for medicine and animal health. While nearly all living multi-cellular organisms are capable of regeneration, there are major differences in the animal kingdom. Some organisms are capable of regenerating virtually every cell in their bodies. In hopes of engineering tissue regeneration for medical applications, the mechanisms by which organisms regenerate are being widely investigated. To better understand regeneration, the role of P-element Induced WImpy testis (PIWI) proteins are being evaluated. In collaboration with PIWIinteracting RNAs (piRNAs), PIWI proteins have been proven instrumental to transposon silencing and maintenance of the genome in …

Development Of A Novel Environmental Dna (Edna) Tool For Monitoring Vulnerable Freckled Guitarfish, Pseudobatos Lentiginosus, In The Western Central Atlantic, Sarah Toepfer

Honors Theses

Rhino-rays are the most threatened group of elasmobranchs, having experienced widespread declines due to mortalities in fisheries and habitat degradation. Within the Western Central Atlantic, there are two extant species of Rhino-rays, the Critically Endangered Smalltooth Sawfish, Pristis pectinata, and the Vulnerable Freckled Guitarfish, Pseudobatos lentiginosus. Although there is research committed to P. pectinata in this region, less is known about the distribution status of P. lentiginosus. Over the past 50 years, P. lentiginosus have undergone a presumed range contraction in U.S. waters; once found from North Carolina to Texas, and historically common in the north central …

Variations In Thermoregulation Strategies Of Northern And Southern Populations Of Mischocyttarus Mexicanus, Taylor Guild

Honors Theses

Mischocyttarus mexicanus is a species of eusocial paper wasp that is found across much of the Southeastern coastal region of the United States. Contrasting wintering strategies have been seen in northern versus southern populations. Anecdotally, northern populations overwinter by clustering on top of palmetto fronds, their preferred nesting substrate, in a sort of "taco" shape, while southern populations stand on their nests that hang on the underside of the palmetto frond throughout the year. I tested three hypotheses related to the adaptive value of northern over-frond clustering behavior: 1) Over-frond clustering is thermoregulation related, meaning it would be temperature driven. …

The Stringent Response In Pseudomonas Aeruginosa Influences The Phenotypes Controlled By The Gac/Rsm System, Michael Shawn Hooker

Electronic Theses and Dissertations

Pseudomonas aeruginosa is a ubiquitous, opportunistic pathogen that causes acute and chronic infections. Infection is typically initiated via motile and virulent strains. After exposure to stressors, acute infections make both genotypic and phenotypic switches to a chronic, sessile strain. This is due to intricate regulatory networks directing gene expression in response to stressors. One network, GacA/GacS, has been established to control virulence factors. The stringent response of bacteria is mediated by alarmones produced primarily by RelA which responds to starvation.

To study the effect of the stringent response on the virulence switch. A series of experiments were run in both …

Cyclic-Di-Gmp Regulates Salmonella Typhimurium Infection Of Epithelial Cells And Macrophages, Abdulafiz Musa

Electronic Theses and Dissertations

Regulation of the bacterial second messenger cyclic-di-GMP in Salmonella Typhimurium allows it to delicately alter phenotypes to optimize invasion and survive intracellularly in epithelial cells and macrophages to become virulent and cause infection. Cyclic-di-GMP concentration is regulated by the presence of external stimuli, sensory diguanylate cyclases (DGCs) and phosphodiesterases (PDEs), and cyclic-di-GMP binding effectors. Previous studies established that maintenance of low cyclic-di-GMP concentrations is required for survival in macrophages, and that deletion of 3 active PDEs reduces this survival. Here I showed that these 3 PDEs also influenced the infection of epithelial cells. Further studies re-established the decreased survival in …

New Reports Of Smilodon And Panthera From North American Cave Sites With Reviews Of Taxonomy, Biogeography, And History, Matthew Bushell

Electronic Theses and Dissertations

In this study, three new reports of large felids from the Pleistocene are presented and discussed. A single partial left dentary from Jawbone Cave represents the first confirmed presence of S. fatalis in east Tennessee and was sampled for radiocarbon dating. Wind Tunnel and Chilly Bowl Cave are among the first records of P. onca to be identified confidently from Arkansas. Chilly Bowl Cave also produced two trackways attributable to Panthera sp., one set potentially belonging to P. atrox. In addition to the description of these remains and the caves they were found in, taxonomic histories for both S. fatalis …

Inhibiting Survival Of Salmonella During Desiccation Through The Use Of Naturally Occurring Signals, Joseph Headrick

Electronic Theses and Dissertations

A rising problem in agriculture is the increase of antibiotic-resistant Salmonella cases associated with chicken eggs, which transmit infection to humans. To counter this, new approaches to combat Salmonella in chickens and desiccated on eggshells are vital in the prevention of human foodborne illness. Disrupting signaling pathways with naturally occurring compounds provides a potential novel avenue for prevention of Salmonella infections, as this would disrupt sensing of these environments and inhibit subsequent optimal gene expression. Starting with signals identified in previous studies, salicylic acid was found to inhibit Salmonella desiccation survival on both eggshells and plastic. To expand upon this, …

Vibroacoustic Response Of The Tympanic Membrane To Hyoid-Borne Sound Generated During Echolocation In Bats, Chelsie Snipes

Electronic Theses and Dissertations

The hyoid apparatus in laryngeally echolocating bats forms a mechanical connection between the larynx and auditory bullae and has been hypothesized to transfer the outgoing echolocation call to the middle ear during echolocation call emission. We used µCT data to build models of the hyoid apparatus and middle ear from six species of bats and used finite element modeling (FEM) to measure the vibroacoustic response of the tympanic membrane due to hyoid-borne sound generated during echolocation. We found that hyoid-borne sound in all six species stimulated the eardrum within a range likely heard by bats. Although there were minor differences …

Neuronal Or Intestinal Knockdown Of C. Elegans Nadk-1 Decreases Oxygen Consumption And Reactive Oxygen Species, Jake Regan

Electronic Theses and Dissertations

Reactive oxygen species (ROS) such as H2O2 can damage cellular components and are formed as a byproduct of mitochondrial oxidative metabolism. Studies using the nematode C. elegans have found that increasing ROS during development or early adulthood can extend lifespan, while increasing ROS during later adulthood normally decreases lifespan. NADPH provides the reducing power for several cellular antioxidants and is synthesized in a two-step reaction from NAD+ with the first step being catalyzed by NAD kinase (NADK). In this study, the effects of knocking down C. elegans cytoplasmic NADK, nadk-1 globally or in a neuron or intestine-specific manner starting from …

Comparative Characteristics Of Integrin Αdβ2 Binding To Native Fibrinogen And Fibrinogen Modified By Dha Oxidation During Inflammation, Ajibola Ilesanmi

Electronic Theses and Dissertations

2-ω-carboxyethylpyrrole (CEP) is a product of docosahexaenoic acid (DHA) oxidation, which forms covalent adducts with different proteins. CEP-modified proteins can interact with macrophage receptor, integrin αDβ2. This study aims to compare αDβ2 binding to its physiological ligand, fibrinogen, and CEP-modified fibrinogen, which is formed during inflammation. We hypothesize that modification of fibrinogen changes its ligand-binding properties to integrin αDβ2 which can affect macrophage migration and retention. Recombinant αD I-domain and αDβ2-transfected HEK293 cells were used for the experiments. Using biolayer interferometry, we found that the affinity of αD I-domain binding to fibrinogen-CEP was higher than fibrinogen and inhibited by the …

Nebline, May 2023

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

The 4-H Thriving Model Provides a Guide for Helping Youth Grow to Their Full Potential by Tracy Anderson

Beef: A Healthy and Delicious Choice for Your Next Meal by Kayla Colgrove

Recipe of the Month: Skillet Lasagna by Kayla Colgrove

Managing Chlorosis in Trees by Sarah Browning

Garden Guide: Things to Do This Month

May is the Perfect Time to Learn More About Your Drinking Water! by Becky Schuerman

Cash Rent Survey

Challenging Behavior Corner: Providing Choices by Hayley Jackson

Pollinator Spotlight: The Yucca Moth by Kait Chapman

At Ag Literacy Festival, 4th Graders Learn How Agriculture Impacts Their Daily …

Genetic Implications Of Language Acquisition, Marissa Renee Ciccarini

Honors Scholar Theses

The argument about whether language acquisition is "nature" or "nurture" has been long debated. Linguists have concluded that it requires the two, but how much does language acquisition rely on nature? Children show the capacity to learn languages quickly and without much effort. While research suggests that infants absorb many visual and verbal cues in their environment, biological structures are the underlying component of how this knowledge is gathered and organized. The genetics that code for specific neurophysiological pathways affect how people interact with their environment and where information is stored, forming the basis for these biological structures. Genetic research …

Oxalic Acid Leaf Disk Soak Assay Is A New Possibility In Screening For Blight Resistance In Castanea Species, Kaitlyn Harden

Honors Theses

Chestnut blight is a disease caused by the ascomycete fungus Cryphonectria parasitica in the Castanea species. The fungus uses oxalic acid (OA) to attack the tree’s cells. Castanea dentata, the American chestnut, was wiped out by chestnut blight in the early to mid-20th century, but several East Asian Castanea species appear highly resistant to the fungus. To breed resistant American type trees, screening methods are used to enable selection of interspecific hybrids. The alternative small stem assay (aSSA) is a method of screening container-grown hybrid seedlings during their first growing season by directly infecting them with C. parasitica. Some plant …

Assessing The Utility Of High-Throughput Phenotyping For Ecological Applications, Annabree Corlew

Honors Theses

A phenotype describes the expressed traits of an organism. These traits can provide insight into interactions between an organism and its environment, making them a key focus of ecological research. But the process of phenotyping traits can be tedious to collect for large-scale experiments. High-throughput phenotyping software has the ability to speed up the phenotyping process by allowing multiple traits to be phenotyped at once. However, the utility of this relatively new and continually developing computational tool is still being assessed, especially beyond applications focused on agricultural crops and grasses. I investigated the accuracy and efficiency of the open-access high-throughput …

Species Diversity Of Coleoptera Populations In An Urban Garden In Chattanooga, Tennessee, Mallory Anderson

Honors Theses

Insects are an essential part of the function of ecosystems. The majority of entomological faunistic research has been conducted primarily in rural areas due to high diversity, space for bulky traps, and less outside influence from human activities. However, the need for time-series insect biodiversity data, in rural areas and urban areas alike, is paramount in the wake of our current sixth mass extinction event. Previous research has shown that the greater Chattanooga area is comprised of a diverse population of insects in the Coleoptera (beetles) order, and as shown in the University of Tennessee at Chattanooga’s (UTC) Insect Collection. …

Role Of Pseudomonas Aeruginosa Exoenzymes S, T, And Y In The Modulation Of Intrinsic Apoptosis In Pulmonary Microvascular Endothelial Cells, Andrea M. Vavrinek

Honors Theses

P. aeruginosa is the most common cause of ventilator-associated pneumonia in ICU patients. P. aeruginosa uses a type III secretion system to inject exoenzymes S, T, U, and Y into host cells, exhibiting unique effects. Pulmonary microvascular endothelial cells (PMVECs) are used to evaluate cellular changes caused by exoenzymes. ExoY infection of PMVECs leads to cell rounding but does not lead to cell death, unlike ExoS/T. The current study evaluated the exoenzyme-induced modulation of intrinsic apoptosis in endothelial cells. Strain PAK, producing ExoS, T, and Y, was compared to isogenic strains expressing either S, SY, T, TY, Y, or none …

Immobilization And Its Effects On Functional Recovery After Spinal Cord Injury., William H. Gregory

College of Arts & Sciences Senior Theses

Recovery, or rather the failure to recover, is a perplexing issue of spinal cord injury that is currently being investigated. This issue becomes more puzzling when investigating models in which spinal cord injury (SCI) is studied. There appears to be greater functional recovery experienced by animals within these models after injury as compared to patients in the clinical setting. While many things could contribute to this disparity, one difference that stands out when comparing the basic research model and clinical experience of SCI is the inactivity and limb disuse after the injury. This same level of immobility is rarely accounted …

The Emerging Oral Pathogen, Filifactor Alocis, Modulates Antimicrobial Responses In Primed Human Neutrophils., Ian J. Snider

College of Arts & Sciences Senior Theses

Periodontitis is an irreversible, chronic inflammatory, infectious disease of the oral cavity that affects approximately half of all adults 30 years or older in the USA. The oral cavity is under high immune surveillance because of its constant exposure to microbes in the environment. The primary immune cell responsible for this surveillance is the neutrophil. Pathogens associated with periodontitis possess virulence factors and have evolved strategies to evade neutrophil antimicrobial responses to survive. One such pathogen is Filifactor alocis, whose presence is associated with the progression of periodontitis. F. alocis manipulates several neutrophil antimicrobial functional responses to avoid killing, an …

Impacts Of Dietary Restriction On A Drosophila Model Of Werner Syndrome, Eileen Sember

College of Arts & Sciences Senior Theses

Werner syndrome (WS) is an autosomal recessive disorder that results in premature aging and occurs in 1 in 1,000,0000 to 1 in 10,000,000 people. In humans, WS is the result of mutations that render the WRN gene, that contains a helicase and an exonuclease domain, non-functional. Currently, there is no cure for WS in humans, making dietary and lifestyle interventions attractive for increasing the quality and longevity of lives. Diet restriction (DR) has been shown to extend the lifespan of several model organisms, including Drosophila melanogaster, making it a strong candidate for WS treatment. In this thesis, mutant flies …