Life Sciences Commons^™

Keratin 17 Is A Prognostic And Predictive Biomarker In Pancreatic Ductal Adenocarcinoma, Lyanne Delgado-Coka, Lucia Roa-Peña, Sruthi Babu, Michael Horowitz, Emanuel Petricoin, Lynn Matrisian, Edik Blais, Natalia Marchenko, Felicia Allard, Ali Akalin, Wei Jiang, Md, Phd, Brent Larson, Andrew Hendifar, Vincent Picozzi, Minsig Choi, Kenneth Shroyer, Luisa Escobar-Hoyos

Department of Pathology, Anatomy, and Cell Biology Faculty Papers

OBJECTIVES: To determine the role of keratin 17 (K17) as a predictive biomarker for response to chemotherapy by defining thresholds of K17 expression based on immunohistochemical tests that could be used to optimize therapeutic intervention for patients with pancreatic ductal adenocarcinoma (PDAC).

METHODS: We profiled K17 expression, a hallmark of the basal molecular subtype of PDAC, by immunohistochemistry in 2 cohorts of formalin-fixed, paraffin-embedded PDACs (n = 305). We determined a K17 threshold of expression to optimize prognostic stratification according to the lowest Akaike information criterion and explored the potential relationship between K17 and chemoresistance by multivariate predictive analyses.

RESULTS: …

Wild Pigs (Sus Scrofa) At Croft State Park In Spartanburg County, South Carolina, Jonathan J. Storm, Amelia R. Scollon, Melissa A. Storm, Briget C. Doyle

Journal of the South Carolina Academy of Science

No abstract provided.

Examination Of Oncogenic Effects Of Environmental Pollutants, Andrew Ackerman, Matthew Behling, Brock Earley, Janay Vacharasin

Journal of the South Carolina Academy of Science

Chemical byproducts produced by surrounding industrial complexes have polluted the local estuaries of Georgetown, South Carolina for several decades¹. Previous studies completed by the EPA and SCDNR showed that the estuaries contained carcinogenic pollutants released from the local manufacturing plants¹. One of the mentioned pollutants was dioxins which are produced during the paper bleaching process². Dioxins are highly toxic compounds that have various carcinogenic effects on the organisms that inhabit the area. These previous studies were conducted over thirty years ago. Therefore, a current study to determine if chemical byproducts are contaminating local estuaries …

A Triumph Of Conservation: The University Of South Carolina Aiken’S Bluebird Trail, Alyssa Godfrey, Emory Owens, Quinn Schreiber, Michelle L. Vieyra

Journal of the South Carolina Academy of Science

The Eastern Bluebird (Sialia sialis) was once an endangered species, with over 90% of its population declining in the early 1900s (Ritchison, 2000). These birds play a crucial role in regulating insect populations and maintaining the safety of food sources, making them important both economically and environmentally. Eastern Bluebirds are proof that conservation efforts work, as they are now a species of least conservation concern in the United States. Since 2020, undergraduate students at the University of South Carolina Aiken have collaborated with the South Carolina Bluebird Society to establish and monitor 31 nesting boxes across the main campus …

Striatal Beat Frequency Interval Timing Model With Microgravity Stressor, Jason Michael Fitzgerald, Sorinel Oprisan

Journal of the South Carolina Academy of Science

The Striatal Beat Frequency (SBF) model of interval timing uses frontal cortex (FC) neural oscillations to record the state of the brain at the reinforcement time Tc during fixed interval (FI) procedures in the long-term memory (LMEM). The state of the FC oscillators at any given time is stored in a short-term memory (SMEM) buffer. The SBF model uses the spiny neurons of the basal ganglia (BG) as coincidence detectors to produce beats between the content of the SMEM and LMEM. Across multiple species that can perform interval timing, there are two invariant properties: (a) the timing is precise, and …

Length-Weight And Length-Length Relationships For Common Fish And Invertebrate Species In The North Inlet-Winyah Bay Estuarine System, South Carolina, Usa, Catherine A. Friedline, Matthew E. Kimball, Bruce W. Pfirrmann, In Cha, Kayleigh B. Wolstenholme, Ryan J. Rezek

Journal of the South Carolina Academy of Science

Establishing accurate weight-length relationships (WLR) and length-length relationships (LLR) is critical for effective fisheries management and ecological research. This study updates these essential metrics for commonly found fish and shrimp species in the North Inlet-Winyah Bay estuarine system, South Carolina, addressing gaps where previous data were unavailable, outdated, or sourced from other regions. Our research analyzed 7,874 specimens from 20 species across thirteen families, collected through trawl samples and bi-weekly seines from November 2022 to December 2023. The findings demonstrate robust WLRs with high coefficients of determination. Similarly, the LLRs confirmed reliable conversions between different length measurements. This study not …

Growth And Mobility Of Physella Acuta Under Individual And Combined Acetaminophen And Salinity Exposure, Rhea Wilder, Jason Doll, Daniel Elias

Journal of the South Carolina Academy of Science

Global climate change, driven by rapid population growth and anthropogenic activities, presents an urgent challenge to aquatic ecosystems. Salinity intrusion threatens water quality and availability for human and wildlife populations. At the same time, due to the demand for pharmaceuticals, these pollutants are increasingly detected in freshwater environments, with acetaminophen being one of the most prevalent. This research analyzed the individual and combined effects of salinity (2.5 g/L) and acetaminophen (488 μg/L) on Physella acuta. Overall, we observed reduced snail movement under elevated salinity and no effects on growth or movement with acetaminophen alone or in combination with salinity. …

Effects Of Technique And Dummy Mass On Law Enforcement-Specific Body Drags: Testing And Training Implications, Matthew R. Moreno, J. Jay Dawes, Robin (Rob) Marc Orr, Joseph M. Dulla, Robert G. Lockie

International Journal of Exercise Science

International Journal of Exercise Science 17(4): 1235-1249, 2024. Current law enforcement body drag tests may use dummy masses that are underweight compared to current population norms. This study aimed to determine differences in 74.84-kg and 90.72-kg body drag times when performed with a standard (pick up and stand with dummy prior to dragging), adapted (incorporation of time to lift dummy to standing), and preferred (drag with any technique) technique. Forty-three (24 males, 19 females) physically-active, healthy civilians (surrogate population for police recruits) completed drags over 9.75 m with 74.84-kg and 90.72-kg dummies using the three techniques previously stated. A 2 …

Barriers To Implementaion Of California Vegetation Treatment Program Projects, Jacquelyn Morales

Master of Science in Environmental Sciences and Management Projects

To better defend wild lands within California's state responsibility areas against wildfire, progress toward efficient fuels management is vital. Created in effort to increase pace and scale of forest fuels reduction, the California Vegetation Treatment Program (CalVTP) serves as method to expedite fire fuel reduction, fuel break development, and ecological restoration projects by streamlining environmental regulatory approval. To better assess the progress of fuels management projects across the state, this professional project aims to look at barriers faced by project proponents when using the CalVTP. A questionnaire was emailed to the project proponents behind the 81 unique CalVTP projects in-progress. …

The Fibro-Adipogenic Progenitor Apod+Dcn+Llum+ Cell Population In Aggressive Carcinomas, Lingyi Cai, Mikhail G Kolonin, Dimitris Anastassiou

Student and Faculty Publications

We identified a progenitor cell population highly enriched in samples from invasive and chemo-resistant carcinomas, characterized by a well-defined multigene signature including APOD, DCN, and LUM. This cell population has previously been labeled as consisting of inflammatory cancer-associated fibroblasts (iCAFs). The same signature characterizes naturally occurring fibro-adipogenic progenitors (FAPs) as well as stromal cells abundant in normal adipose tissue. Our analysis of human gene expression databases provides evidence that adipose stromal cells (ASCs) are recruited by tumors and undergo differentiation into CAFs during cancer progression to invasive and chemotherapy-resistant stages.

Ecological Risk Assessment For The Western Australian Sea Cucumber Resource, Kimberley A. Smith, Cameron Desfosses, Dave Murphy, Amie Steele, Lachlan W. Strain

Fisheries research reports

In April 2024, the Department of Primary Industries and Regional Development (Department) convened an ecological risk assessment (ERA) of the fisheries that access the Western Australian Sea Cucumber Resource, which comprises a range of species from the class Holothuroidea. This document contains background information used to support the ERA risk scoring process, along with the scores from the workshop and a summary of the workshop discussions that were relevant to the scoring. This includes an overview of commercial fisheries that access the Resource, focusing primarily on the WA Sea Cucumber Fishery, and one fishing authorisation issued under the Aboriginal Community …

Visualizing Embryogenesis In The Seed, Janlo M. Robil, Dechang Cao

Biology Faculty Publications

No abstract provided.

American Association Of Plastic Surgeons Consensus On Breast Implant-Associated Anaplastic Large-Cell Lymphoma, Mark W Clemens, Terence M Myckatyn, Arianna Di Napoli, Andrew L Feldman, Elaine S Jaffe, Cara L Haymaker, Steven M Horwitz, Kelly K Hunt, Marshall E Kadin, Colleen M Mccarthy, Roberto N Miranda, H Miles Prince, Fabio Santanelli Di Pompeo, Sari D Holmes, Linda G Phillips

Student and Faculty Publications

BACKGROUND: In the absence of high-quality evidence, there is a need for guidelines and multidisciplinary consensus recommendations on breast implant-associated anaplastic large-cell lymphoma (BIA-ALCL). The purpose of this expert consensus conference was to evaluate the existing evidence regarding the diagnosis and management of BIA-ALCL caused by textured implants. This article aims to provide evidence-based recommendations regarding the management and prevention of BIA-ALCL.

METHODS: A comprehensive search was conducted in the MEDLINE, Cochrane Library, and Embase databases, and supplemented by manual searches of relevant English-language articles and "related articles" sections. Studies focusing on breast surgery and lymphoma associated with breast implants …

The Reveal: A Technical Study And Conservation Treatment Of An Overpaint Portrait, Camille Ferrer

Art Conservation Master's Projects

A severely damaged 19th-century oil painting depicting a portrait of a woman was treated at Patricia H. and E. Garman Art Conservation Department. A typed letter provided by the owner mentioned that it has been previously restored yet returned with unsatisfactory results. After further examination, the painting appeared to have been previously treated multiple times by different people. There was overpaint distinctly present on the face and later discovered to be present overall. The full state of condition of the painting was initially unknown due to the sum of the surface being overpainted. However, there were evidence of paint loss …

Dairy Club Digest: Udderly Good Times, South Dakota State University Dairy Club

Dairy Digest

This is the 2024 Dairy Club Digest. The Diary Club Digest is published annually by the South Dakota State University Dairy Club. The Digest contains information and news about the activities and members of the SDSU Dairy Club for the academic year 2023 - 2024.

Incorporating Solvation Thermodynamic Mapping In Computer-Aided Drug Design, Yeonji Ji

Dissertations, Theses, and Capstone Projects

Advancements in computational techniques have revolutionized structure-based drug design, substantially improving the efficiency and effectiveness of the drug discovery process by reducing time, costs, and labor requirements. These advancements include various methods, such as investigating small molecule ligands binding to proteins, exploring alternative protein conformations, and solvation mapping on the protein surfaces. Among these methods, understanding the correlation between protein-ligand binding and the role of solvation is important.

A fundamental concept in protein-ligand binding is shape and electrostatic complementarity, which is complicated by the inherent flexibility of proteins. In the absence of small molecule ligands, proteins are complementary to surface …

Differentiation Activates Mitochondrial Opa1 Processing In Myoblast Cell Lines, Harpreet Kaur, Omar Carrillo, Iraselia Garcia, Isaiah Ramos, Shaynah St. Vallier, Patrick De La Torre, Alma Lopez, Megan Keniry, Daniela Bazan, Jorge Elizondo, Robert Gilkerson

School of Integrative Biological and Chemical Sciences Faculty Publications and Presentations

Mitochondrial optic atrophy-1 (OPA1) plays key roles in adapting mitochondrial structure to bioenergetic function. When transmembrane potential across the inner membrane (Δψm) is intact, long (L-OPA1) isoforms shape the inner membrane through membrane fusion and the formation of cristal junctions. When Δψm is lost, however, OPA1 is cleaved to short, inactive S-OPA1 isoforms by the OMA1 metalloprotease, disrupting mitochondrial structure and priming cellular stress responses such as apoptosis. Previously, we demonstrated that L-OPA1 of H9c2 cardiomyoblasts is insensitive to loss of Δψm via challenge with the protonophore carbonyl cyanide chlorophenyl hydrazone (CCCP), but that CCCP-induced OPA1 processing is activated upon …

Estimating Relative Juvenile Abundance Of Ecologically Important Finfish In The Virginia Portion Of Chesapeake Bay: 2024 Annual Report (1 July 2023 – 30 June 2024), Troy D. Tuckey, Mary C. Fabrizio

Reports

The VIMS Juvenile Finfish Trawl Survey provides crucial data to state, regional, and national fisheries management agencies, including the Virginia Marine Resources Commission (VMRC), the Atlantic States Marine Fisheries Commission (ASMFC), the Mid-Atlantic Fisheries Management Council (MAFMC), and the National Marine Fisheries Service (NMFS). Annual indices of juvenile abundance have been generated from trawl survey data for species of key recreational and ecological importance in the Virginia portion of Chesapeake Bay. These include Spot, Atlantic Croaker, Weakfish, Summer Flounder, Black Sea Bass, Scup, Striped Bass, White Perch, White Catfish, Channel Catfish, Blue Catfish, Silver Perch, American Eel, and Bay Anchovy. …

Individual-Based Modelling Of Adaptive Physiological Traits Of Cyanobacteria: Responses To Light History, Mohammad Hassan Ranjbar, David P. Hamilton, Michael L. Pace, Amir Etemad-Shahidi, Cayelan C. Carey, Fernanda Helfer

Research outputs 2022 to 2026

Adaptive physiological traits of cyanobacteria allow plasticity of responses to environmental change at multiple time scales. Most conventional phytoplankton models only simulate responses to current conditions without incorporating antecedent environmental history and adaptive physiological traits, thereby potentially missing mechanisms that influence dynamics. We developed an individual-based model (IBM) that incorporates information on light exposure history and cell physiology coupled with a hydrodynamic model that simulates mixing and transport. The combined model successfully simulated cyanobacterial growth and respiration in a whole-lake nutrient enrichment experiment in a temperate lake (Peter Lake, Michigan, USA). The model also incorporates non-photochemical quenching (NPQ) to improve …

Hereditary Spherocytosis Due To A Novel Variant, P.Q1034x, In The Beta Subunit Of The Spectrin Gene: A Case Report, Emmalee M. Kugler, Akash Patel, Faraz Afridi, Maria I. Scarano, Rafat Ahmed

Department of Emergency Medicine Faculty Papers

Background: Heterozygous pathogenic variants of SPTB cause hereditary spherocytosis (HS) in a quarter of cases. Case report: A 14-day-old male presenting with persistent anemia and hyperbilirubinemia was diagnosed with HS by increased red blood cell osmotic fragility and decreased fluorescence on the eosin-5′-maleimide binding test. For his failure to thrive and hypotonia, genetic sequencing revealed a de novo variant of the SPTB gene (p.Q1034X) on exon 15. This variant is predicted to cause loss of normal protein function either through protein truncation or nonsense-mediated mRNA decay. A variant of uncertain significance (p.R438W) in the chondroitin sulfate synthase 1 (CHSY1) gene …

Seal Counting On Our Plages (S.C.O.O.P.), Kaanan Kharwa

Master's Theses

The Vertebrate Integrative Physiology (VIP) lab monitors the population of northern elephant seals at the largest mainland breeding colony, located at Piedras Blancas (San Simeon, CA). As the population expands, more human-seal interactions and conflicts over land use occur. The VIP lab's work informs California State Parks and helps with the management of the rookery. Currently, members of the VIP lab fly a drone over the beaches, capture multiple images, and manually count the seals, which takes around 14 to 21 hours of analysis per survey. Machine learning methods such as Convolutional Neural Networks (CNN) and Region-based Convolutional Neural Networks …

Development Of Extruded Puffed Snack Utilizing Carrot Pomace, Bean Flour, And Rice Starch As Primary Ingredients, Julia Zoe

Master's Theses

Every year, the carrot industry worldwide wastes up to 50% of carrots as raw material due to processing (Šeregelj et al., 2020). When carrots are juiced, the remaining fibrous pulp is often discarded as carrot pomace. In order to redirect this food waste, the first objective of this research was to optimize formulations for an extruded puffed snack that is most similar to commercially available puffed snacks, utilizing baby lima bean flour and carrot pomace

Hardness (kg), cross-sectional expansion ratio, bulk density (g/cm³), moisture content (%), water activity, specific mechanical energy (kJ/kg), carotenoid concentration (ppm), and total dietary …

The Influence Of Environmental Change On Genetic Diversity Across Spatial And Taxonomic Scales, Connor M. French

Dissertations, Theses, and Capstone Projects

The spatial distribution of genetic diversity is of interest to biodiversity scientists and conservationists and is a fundamental metric of biodiversity. Genetic diversity patterns across spatial and taxonomic scales contain information about population and assemblage dynamics that can convey their resilience to environmental change. Ectotherms are especially linked to their environments and may be especially sensitive to fluctuations in the environment over time. Herein, I investigate global and regional patterns of genetic diversity in two groups of ectotherms, insects and lizards, to understand the relationship between environmental change and genetic diversity, from populations to assemblages. Overall, my research aims to …

Repurposing Bt-11 To Treat Alzheimer’S Disease: Exploring The Glutathione-S-Transferase Lancl2 As A Target, Emily Birnbaum

Dissertations, Theses, and Capstone Projects

Approximately 99.6% of potential Alzheimer’s drugs fail, thus developing successful drugs is a high priority. The failure at developing successful drugs relates to the complex nature of the disease itself. Many components act together to trigger a cascade that ultimately results in neurodegeneration and cognitive dysfunction associated with the disease. In building a multiplex model of Alzheimer’s it is important to understand its specific biological mechanisms. One of these key pathological mechanisms is neuroinflammation. Understanding the pathways involved in neuroinflammation in Alzheimer’s is an urgent need, as it poses a promising avenue for future effective therapeutics. Specifically, as many investigational …

Exploring Berberine As A Novel Therapeutic Agent Against Staphylococcus Aureus Infections: Targeting Inflammation And Antibiotic Resistance, Daniel Kopulos

NYMC Student Theses and Dissertations

Staphylococcus aureus is a versatile Gram-positive bacterium commonly found on human skin. While often harmless, it can cause various infections when the skin is compromised, ranging from minor issues to life-threatening conditions in immunocompromised individuals.

The bacterium’s ability to resist antibiotics, particularly methicillin, underscores its clinical challenge. Staphylococcus aureus can also acquire vancomycin resistance. It evades immune responses through multiple mechanisms, including capsule formation, interference with immune proteins like staphylococcal protein A, and secretion of toxins such as Panton-Valentine Leukocidin. Understanding these mechanisms is crucial for developing effective strategies against Staphylococcus aureus infections.

The immune response to Staphylococcus aureus infections …

The Potential For Automated Insect Classification Using Infrared Remote Sensing, Rachel Deahl

Theses

Insects play an important role within ecosystems, occupying almost all trophic levels and providing crucial services such as pollination and decomposition. In addition, they can directly and negatively impact humans as crop pests, parasites, and disease vectors. Thus, it is essential to understand the spatial and temporal dynamics of insect populations and communities. Various forms of remote sensing, such as LiDAR, have been used to capture data on insects but often are costly and require advanced expertise. The objective of this thesis is to evaluate a cost-effective methodology that balances information loss. This thesis aims to outline the discrimination required …

Antioxidant, Photoprotective, And Cytotoxic Activities Of Tristaniopsis Merguensis Leaf Fractions With Molecular Docking Study Of Potential Fraction, Boima Situmeang, Respati Tri Swasono, Tri Joko Raharjo

Karbala International Journal of Modern Science

Through experimental along with molecular docking techniques of potential fraction, this study intended to evaluate the essential phytochemical elements of Tristaniopsis merguensis leaflets as well as potential antioxidant, photoprotective, along with cytotoxic activities. The DPPH and ABTS tests were used to evaluate the antioxidant efficacy of the n-hexane (HPF), ethyl acetate (EPF), and methanol (MPF) fractions. Using an in-vitro solar protection factor (SPF) assessment, the photoprotective ability of T. merguensis components against UV damage was examined. Subsequently, invitro cytotoxic research were carried out against MCF-7 cell line (breast cancer line) assay. This was followed by molecular docking stimulation testing against …

Antibiotic-Resistant Gram-Negative Bacteria In A Local Wastewater Treatment Plant In North Georgia, Nou Moua, Lindsay Mccuen, Sarah White, Swapna Bhat, Margi Flood, Jeanelle Morgan

Georgia Journal of Science

Antibiotics are some of the most essential lifesaving drugs currently available to us against infectious diseases. Several pathogens are developing resistance to these drugs and many have become resistant to multiple antibiotics. Such multi-drug resistance is becoming a global issue and has been found in many environments including wastewater treatment plants (WWTPs). In this study, we sampled a local WWTP for antibiotic-resistant bacteria. This WWTP is in North Georgia and runs directly into Lake Lanier, which is the main source of drinking water for the Atlanta area as well as a popular spot for water recreation. We obtained treated and …

Methodologies For Dry Fixation And Taxidermy Of Education-Oriented Scorpion Specimens, Victoria Tang

Euscorpius

Scorpions hold a renowned status as iconic creatures across numerous cultures in the world. Traditionally preserved as desiccated specimens for educational purposes, they have been exhibited in museums and pedagogic collections, serving as concrete epistemological conduits for public education on biodiversity. However, these specimens frequently lack meticulous organization, potentially misrepresenting the animals’ ethological characteristics. This brief article aims to offer paradigmatic guidance for taxidermy of scorpions, ensuring a more accurate depiction of their in vivo habitus, achievable through the use of readily obtainable tools and undemanding techniques.

Acute Kidney Injury Induced Lithium Toxicity With Concomitant Neuroleptic Malignant Syndrome, Yin Ye Lai, Normaizuwana M. Mokhtar, Intan Nureslyna Samsudin, Subashini C. Thambiah

BioMedicine

Lithium, despite being an indispensable agent in the treatment of psychiatric disorders, has a narrow therapeutic index and needs to be carefully administered. Neuroleptic malignant syndrome (NMS) is a rare but potentially fatal complication due to central dopaminergic blockade. This case report illustrates the challenges in lithium therapy particularly related to the development of NMS when further risk factors such as polypharmacy and dehydration are present. We report a case of a 50-year-old man with underlying bipolar affective disorder who was previously able to tolerate olanzapine and lithium well, however developed chronic lithium toxicity due to diminished lithium elimination in …