Life Sciences Commons^™

Deconstructed Plastic Substrate Preferences Of Microbial Populations From The Natural Environment, Lindsay I. Putman, Laura G. Schaerer, Ruochen Wu, Daniel G. Kulas, Ali Zolghadr, Rebecca Ong, David Shonnard, Stephen Techtmann

Michigan Tech Publications, Part 1

Over half of the world's plastic waste is landfilled, where it is estimated to take hundreds of years to degrade. Given the continued use and disposal of plastic products, it is vital that we develop fast and effective ways to utilize plastic waste. Here, we explore the potential of tandem chemical and biological processing to process various plastics quickly and effectively. Four samples of compost or sediment were used to set up enrichment cultures grown on mixtures of compounds, including disodium terephthalate and terephthalic acid (monomers of polyethylene terephthalate), compounds derived from the chemical deconstruction of polycarbonate, and pyrolysis oil …

Agroforestry Buffers On Nitrogen Reduction In Groundwater On A Grazed Hillslope, Miguel Salceda, Ranjith P. Udawatta, Stephen H. Anderson, Sidath S. Mendis, Fengjing Liu

Michigan Tech Publications, Part 1

Agricultural practices often contribute to the transport of solutes into groundwater; thus, low-cost strategies that extract nutrients from groundwater are essential to address water pollution. This study evaluated the effects of agroforestry (tree + grass; AB [cottonwood {Populus deltoides Bortr. ex Marsh.}]) and grass buffers (GB; [tall fescue Schedonorus phoenix (Scop.) Holub, Red clover {Trifolium pretense L.}, and Lespedeza {Lespedeza Michx}]) on groundwater nitrogen (N) concentrations. The experiment consisted of two grazing watersheds, one with an AB and another with a GB treatment. Buffers were not grazed since 2001. Three wells representing summit, backslope, and foot-slope positions were installed at …

Higher Overall Intakes Are The Defining Feature Of Dietary Intakes In Nafld And Compared To The General Population, Catherine Properzi, Leon A. Adams, Johnny Lo, Jill L. Sherriff, Gary P. Jeffrey, Therese A. O’Sullivan

Research outputs 2022 to 2026

We aimed to compare the dietary intakes of Australian patients with non-alcoholic fatty liver disease (NAFLD) to general Australian population intake data and determine whether the intake of any nutrient or food group was able to predict the degree of steatosis. Dietary data from fifty adult patients with NAFLD were compared to intake data from the Australian Health Survey for energy, macronutrients, fat sub-types, alcohol, iron, folate, sugar, fibre, sodium and caffeine. Linear regression models adjusting for potential confounders (age, sex, physical activity and body mass index) were used to examine predictive relationships between hepatic steatosis (quantified via magnetic resonance …

Environmental Contamination With Clostridioides (Clostridium) Difficile In Vietnam, Peng A. Khun, Long D. Phi, Huong T. T. Bui, Nguyen T. Bui, Quyen T. H. Vu, Luong D. Trinh, Deirdre A. Collins, Thomas V. Riley

Research outputs 2022 to 2026

AIMS: To investigate the prevalence, molecular type, and antimicrobial susceptibility of Clostridioides difficile in the environment in Vietnam, where little is known about C. difficile. METHODS AND RESULTS: Samples of pig faeces, soils from pig farms, potatoes, and the hospital environment were cultured for C. difficile. Isolates were identified and typed by polymerase chain reaction (PCR) ribotyping. The overall prevalence of C. difficile contamination was 24.5% (68/278). Clostridioides difficile was detected mainly in soils from pig farms and hospital soils, with 70%-100% prevalence. Clostridioides difficile was isolated from 3.4% of pig faecal samples and 5% of potato surfaces. The four …

Clinical Utility Of Mesenchymal Stem/Stromal Cells In Regenerative Medicine And Cellular Therapy, Vitali V. Maldonado, Neel H. Patel, Emma E. Smith, C. Lowry Barnes, Michael P. Gustafson, Raj R. Rao, Rebekah M. Samsonraj

Biomedical Engineering Faculty Publications and Presentations

Mesenchymal stem/stromal cells (MSCs) have been carefully examined to have tremendous potential in regenerative medicine. With their immunomodulatory and regenerative properties, MSCs have numerous applications within the clinical sector. MSCs have the properties of multilineage differentiation, paracrine signaling, and can be isolated from various tissues, which makes them a key candidate for applications in numerous organ systems. To accentuate the importance of MSC therapy for a range of clinical indications, this review highlights MSC-specific studies on the musculoskeletal, nervous, cardiovascular, and immune systems where most trials are reported. Furthermore, an updated list of the different types of MSCs used in …

Arkansas Soybean Performance Tests 2022, J. F. Carlin, R. B. Mulloy, R. D. Bond

Arkansas Agricultural Experiment Station Research Series

Soybean variety and strain performance tests are conducted each year in Arkansas by the University of Arkansas System Division of Agriculture’s Arkansas Crop Variety Improvement Program. The tests provide information to companies developing varieties and/ or marketing seed within the state, and aid the Arkansas Cooperative Extension Service in formulating variety recommendations for soybean producers.

Understanding Ubiquitin-Like Signaling At The Host-Pathogen Interface, Danna Eloisa Guzman Gonzalez

University Honors Theses

Research on pathogen intervention and ubiquitin modification has increased over the last few years but a lot is still unknown about ubiquitin-like modifiers (Ubl) and how or if they are modified by pathogens in the same way as Ubiquitin. In this work, two different studies conducted over the course of 2 years are highlighted. The first study focused on purifying and synthesizing four activity based probes in order to study enzymatic activity in the Ubl-modification systems. These probes were reacted with virulence factors isolated from different bacteria and it was concluded that there were unexpected bands formed between some of …

The Influence Of Microorganisms On Human Health, Tiffany Bui

University Honors Theses

The purpose of this thesis is to explore the interplay between the environment, lifestyle, and composition of human microbiomes across different communities, with a specific focus on immune and digestive health. This literature review investigates three distinct types of communities: isolated/traditional, transitional, and urban/industrialized communities, each characterized by unique environments, societal structures, and interactions. These factors contribute to the distinct microbial populations and compositions within each community. It is impossible to avoid contact with microorganisms as they are present in every aspect of our lives, from the air we breathe, the water we drink, the soil we walk on, the …

Solving The Cable Equation, A Second-Order Time Dependent Pde For Non-Ideal Cables With Action Potentials In The Mammalian Brain Using Kss Methods, Nirmohi Charbe

Master's Theses

In this thesis we shall perform the comparisons of a Krylov Subspace Spectral method with Forward Euler, Backward Euler and Crank-Nicolson to solve the Cable Equation. The Cable Equation measures action potentials in axons in a mammalian brain treated as an ideal cable in the first part of the study. We shall subject this problem to the further assumption of a non-ideal cable. Assume a non-uniform cross section area along the longitudinal axis. At the present time, the effects of torsion, curvature and material capacitance are ignored. There is particular interest to generalize the application of the PDEs including and …

Genetic Population Structure And Effective Number Of Breeders In Systems Across The Range Of The Gulf Sturgeon, Jacob Zona

Master's Theses

Gulf sturgeon (Acipenser oxyicnhus desotoi) are a large, anadromous fish belonging to an ancient lineage that diverged as early as 400 MYA. Overfishing for meat and caviar during the early 1900’s reduced their range and abundance and continued habitat destruction and mortality have limited their ability to recover, leading to their listing under the Endangered Species Act. This study uses genetic techniques to determine the effective number of breeders for multiple spawning groups of Gulf sturgeon in river systems across their range to set a baseline for tracking reproductive success of the species. Accompanying genetic information relevant to …

Comparison Of Female Ovarian Reserve Before Vs After Covid-19 Vaccination, Liubin Yang, Samantha Neal, Tiffany Lee, Andrew Chou, Amy K Schutt, William Gibbons

Children’s Nutrition Research Center Staff Publications

This cohort study examines the association of COVID-19 vaccination with levels of anti-Mullerian hormone and antral follicle count in women seeking fertility treatment.

Dietary Parental Effects In A Generalist Heribivore, Emma J. Sellers

Undergraduate Theses, Capstones, and Recitals

The environment or experiences of a parent generation can impact the fitness of the next generation, a phenomenon known as parental effects. The parental diet, for example, can have consequences for their offspring who may perform better or worse on the same diet. Dietary specialists are often the focus of studies of parental effects due to diet because a narrow diet breadth suggests that the offspring environment may be predictable. Dietary generalists, in contrast, are less often studied regarding parental effects and this may be because their wide diet breadth makes the future environment less predictable.

We investigated whether parental …

(R2032) Modeling The Effect Of Sanitation Effort On The Spread Of Carrier-Dependent Infectious Diseases Due To Environmental Degradation, Ram Naresh, Sandhya Rani Verma, J. B. Shukla, Manju Agarwal

Applications and Applied Mathematics: An International Journal (AAM)

In this present study, an SIS model is proposed and analyzed to study the effect of sanitation effort in controlling the spread of carrier-dependent infectious disease in a human habitat due to environmental degradation. The dynamics of the model consist of six dependent variables, the susceptible population density, infective population density, carrier population density, cumulative density of environmental degradation and the density of sanitation effort applied on carrier population and degraded environment. In the modeling process, the carrier population density and sanitation effort are modeled logistically and the degradation of the environment is assumed to be directly proportional to the …

Potential Impacts Of Environmental Bacteria On The Microbiota Of Loggerhead (Caretta Caretta) And Green (Chelonia Mydas) Sea Turtle Eggs And Their Hatching Success, Colleen Mcmaken, Derek Burkholder, Rosanna J. Milligan Dr., Jose V. Lopez

Biology Faculty Articles

Sea turtle hatching success can be affected by many variables, including pathogenic microbes, but it is unclear which microbes are most impactful and how they are transmitted into the eggs. This study characterized and compared the bacterial communities from the (i) cloaca of nesting sea turtles (ii) sand within and surrounding the nests; and (iii) hatched and unhatched eggshells from loggerhead (Caretta caretta) and green (Chelonia mydas) turtles. High throughput sequencing of bacterial 16S ribosomal RNA gene V4 region amplicons was performed on samples collected from 27 total nests in Fort Lauderdale and Hillsboro beaches in …

Aged 539 Internship Report: Cal Poly Rodeo Media, Marina Levine

Agricultural Education: Graduate Internship Reports

Cal Poly Rodeo is one of the oldest, largest, and winningest college rodeo programs in the country. While completing my Masters in Agricultural Education, I held the position of Assistant Coach for Cal Poly Rodeo and served as head of media and marketing. The program’s social media rivals that of a professional sports media page. This year, I strived to take it to the next level. Throughout the year, I filmed, edited, and produced videos introducing our freshmen, highlighting our seniors and graduate students, and promoting our events such as the Break-A-Wave and Poly Royal. I also spent time in …

Investigating The Mammillary Bodies As An Early Target Of Alzheimer's Disease, Cole Martinson

University Honors Theses

Alzheimer's disease (AD) is the most common form of dementia. With minimal treatment options and no cure, developing a deeper understanding of the pathology of the disease is crucial. For nearly four decades, the accumulation of beta-amyloid (Aβ) plaques has been correlated with the disease and its progression. Previous studies mapping this accumulation show that the mammillary bodies (MB) are an early target of the disease. Glutamatergic neurons are of key interest due to their prevalence in the central nervous system, specifically the MB. To understand the effects of AD on the glutamatergic system, we used vesicular glutamate transporter 2 …

Investigating The Role Of Holoenzyme C In Restoring Replication Following Uv-Induced Dna Damage In Escherichia Coli, Rahul Shimpi

University Honors Theses

The recovery of replication following UV-induced DNA damage in Escherichia coli correlates with the time at which the lesions are repaired, suggesting that the two processes may be coupled. holC encodes the Chi-subunit of replicative DNA polymerase III, and is nonessential for viability, but renders cells hypersensitive to UV-induced damage when mutated, suggesting it may play a specific role in restoring replication when it encounters DNA damage. Here, I characterized the role of HolC in restoring DNA replication following disruption by UV-induced damage. I found that survival following UV in strains deleted for holC was similar to that of strains …

Metaipm: Placing Integral Projection Models Into A Metapopulation Framework, Richard A. Erickson, James P. Pierce, Greg J. Sandland, Hannah M. Thompson, Alison A. Coulter, David C. Glover

Natural Resource Management Faculty Publications

1. Metapopulation models include spatial population dynamics such as dispersion and migration between subpopulations. Integral projection models (IPMs) can include demographic rates as a function of size. Traditionally, metapopulation models do not included detailed populaiton models such as IPMs. In some situations, both local population dynamics (e.g. size-based survival) and spatial dynamics are important.
2. We present a Python package, MetaIPM, which places IPMs into a metapopulation framework, and allow users to readily construct and apply these models that combine local population dynamics within a metapopulation framework. 3. MetaIPM includes an IPM for each subpopulation that is connected to other …

Variability Of Cost And Return Of Dry Direct Seeded Lowland Rice In Major Rainfed Growing Areas In The Philippines, Oliver C. Ocampo, Hazel Anne F. Makahiya, Marjorie V. Pamplona, John Kenneth L. Motilla, Niño Paul Meynard C. Banayo, Crisanta S. Bueno, Pompe C. Sta. Cruz

The Philippine Agricultural Scientist

This study was conducted to evaluate the variability of net income and return on investment (ROI) as affected by grain yield, cost of production, and gross income across provinces wherein the mechanized dry direct seeding technology was being deployed. The study was conducted during 2019 wet season involving 54 sites from 14 provinces with farmers practicing mechanized dry direct seeding technology under rainfed lowland condition. Grain yield varied (0.72 – 6.73 t ha^-1) across provinces and within each province. Total cost of production varied (PhP 23032 – 43421 ha^-1) across provinces. Most sites in Cagayan had …

Angiotensin I-Converting Enzyme Inhibitory And Antioxidative Activities Of The Bioactive Peptides In The Crude Salt-Soluble Protein Hydrolysates Of Pili Nut (Canarium Ovatum Engl.) Cv. Mayon Kernel, Ella Mae Gamba, Lawrence Yves Uy, Mary Ann Torio

The Philippine Agricultural Scientist

The in silico enzyme digestion and peptide function annotation of pili nut (Canarium ovatum Engl.) 11S globulin protein sequence revealed the presence of bioactive peptides with antihypertensive and antioxidative activities. Molecular docking simulations showed that the proline-histidine (PH) ligand can better inhibit angiotensin I-converting enzyme (ACE) activity than captopril. This result was verified through biochemical assays. Pili kernel protein was extracted with 0.5 M NaCl buffer using the modified Osborne fractionation method, which yielded 100 mg of protein per gram of defatted pili kernel determined via Bradford assay. SDS-PAGE suggested that the protein extract had a major legumin-like (11S) …

Physico-Chemical Characteristics Of Ensiled Cassava (Manihot Esculenta Crantz) And Sweetpotato (Ipomoea Batatas L. (Lam.)) Foliage, And Fermentation Kinetics Of Cassava Silage, Arnel N. Del Barrio, Christian V. Lualhati, Kimberly I B. Turaja, Ralph Jovi B. Saldajeno, Mauricio P. Bayubay Jr, Chesa A. Elenterio, Babylyn T. Salazar, Gerard F. Guadayo, Kamla Zyra G. Lavadia, Menandro M. Loresco

The Philippine Agricultural Scientist

This study was conducted to determine the physico-chemical characteristics of ensiled cassava (Manihot esculenta Crantz) and sweetpotato (Ipomoea batatas L. (Lam.)) foliage with or without additives molasses and rice bran. Six treatment combinations were from two crop species (cassava and sweetpotato) and three additives (without additive, 10% molasses, and 10% rice bran). The physical (color, odor, texture) and chemical characteristics (pH, total soluble sugars, Flieg point, dry matter, organic matter, ash, crude protein, NDF, ADF, hemicellulose) of the samples were evaluated following standard procedures. Fermentation kinetics of cassava foliage silage and ruminal in situ DM degradability of cassava …

Intensification Differentially Affects The Delivery Of Multiple Ecosystem Services In Subtropical And Temperate Grasslands, Shishir Paudel, Nuria Gomez-Casanovas, Elizabeth H. Boughton, Samuel D. Chamberlain, Pradeep Wagle, Brekke L. Peterson, Rajen Bajgain, Patrick J. Starks, Jefferey Basara, Carl J. Bernacchi, Evan H. Delucia, Laura E. Goodman, Prasanna H. Gowda, Ryan Reuter, Jed P. Sparks, Hilary M. Swain, Xiangming Xiao, Jean L. Steiner

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Intensification, the process of intensifying land management to enhance agricultural goods, results in “intensive” pastures that are planted with productive grasses and fertilized. These intensive pastures provide essential ecosystem services, including forage production for livestock. Understanding the synergies and tradeoffs of pasture intensification on the delivery of services across climatic regions is crucial to shape policies and incentives for better management of natural resources. Here, we investigated how grassland intensification affects key components of provisioning (forage productivity and quality), supporting (plant diversity) and regulating services (CO2 and CH4 fluxes) by comparing these services between intensive versus extensive pastures in subtropical …

Integrative Analyses Of Genomic And Metabolomic Data Reveal Molecular Mechanisms Associated With Uterine Disease Traits In Transitioning Dairy Cattle, Leanna C. Sanchez, Mohammed Abo-Ismail, Daniel Peterson, Fernando Campos-Chillon

Master's Theses

The metritis complex (MC), characterizing post-partum uterine diseases in dairy cattle has negative implications on animal welfare, production efficiency, and the economic stability of the dairy industry. The studies in this thesis aimed to investigate the genetic architecture of the metritis complex and identify genomic regions and metabolites associated with the development of MC. Thereby enhancing our understanding of the biological pathways and molecular mechanisms involved in the pathophysiology of MC during the transition period in Jersey and Holstein dairy cattle.

Chapter 2 sheds light on the previous work done on MC. The goals of this review were to (1) …

Trophic Dynamics Of The Lake Superior Fish Community, Ariel Edwards

All NMU Master's Theses

The Lake Superior food web has undergone many changes in recent decades, including the rehabilitation of the native apex predator lake charr (Salvelinus namaycush) and the introduction of several nonnative species. The trophic linkages and ecological requirements of the entire fish community, including predators and prey fishes, has not been assessed on a whole-lake scale in over a decade. Here, I investigated the trophic dynamics across multiple regions of the lake, and estimated the consumptive effect of lean lake charr in one region of Lake Superior. From April to October of 2021, a total of five predator, four …

Fate And Distribution Of Orally-Ingested Ceo2-Nanoparticles Based On A Mouse Model: Implication For Human Health, Xingmao Ma, Xiaoxuan Wang, Lei Xu, Honglan Shi, Hu Yang, Kerstin K. Landrock, Virender K. Sharma, Robert S. Chapkin

Chemistry Faculty Research & Creative Works

The use of nanoparticles in agrichemical formula and food products as additives has increased their chances of accumulation in humans via oral intake. Due to their potential toxicity, it is critical to understand their fate and distribution following oral intake. Cerium oxide nanoparticle (CeO2NP) is commonly used in agriculture and is highly stable in the environment. as such, it has been used as a model chemical to investigate nanoparticle's distribution and clearance. based on their estimated human exposure levels, 0.15–0.75 mg/kg body weight/day of CeO2NPs with different sizes and surface charges (30–50 nm with negative charge and <25 >nm with positive …

Pestfacts Wa Issue 06 - June 2023, Benjamin S. Congdon, Rebecca Severtson

PestFacts WA

PestFacts WA Issue 6 - June 2023 contents:

• Green peach aphid alert
• 2023 winter spring insecticide guide is now available

Southern Sea Otter (Enhydra Lutris Nereis) Fur Morphology, Thermal Function, And Buoyancy Across Ontogeny, Kate Riordan

Master's Theses

Sea otters (Enhydra lutris) have the densest fur of any animal, and the hairs function to trap a layer of air that is used for insulation. When a sea otter is born, it has a natal pelage (baby fur), and sea otters eventually molt that fur and replace it with a pelt resembling the adult fur. Sea otter fur is composed of 3 types of hairs: underhairs, intermediate hairs, and guard hairs. Sea otters are more susceptible to the negative effects of oiling from oil spills compared to other marine mammal species because they solely rely on fur …

Differential Inhibition Of Anaplerotic Pyruvate Carboxylation And Glutaminolysis-Fueled Anabolism Underlies Distinct Toxicity Of Selenium Agents In Human Lung Cancer, Teresa W-M Fan, Jason Winnike, Ahmad Al-Attar, Alex C. Belshoff, Pawel Lorkiewicz, Jin Lian Tan, Min Wu, Richard M. Higashi, Andrew N. Lane

Markey Cancer Center Faculty Publications

Past chemopreventive human trials on dietary selenium supplements produced controversial outcomes. They largely employed selenomethionine (SeM)-based diets. SeM was less toxic than selenite or methylseleninic acid (MSeA) to lung cancer cells. We thus investigated the toxic action of these Se agents in two non-small cell lung cancer (NSCLC) cell lines and ex vivo organotypic cultures (OTC) of NSCLC patient lung tissues. Stable isotope-resolved metabolomics (SIRM) using 13C6-glucose and 13C5,15N2-glutamine tracers with gene knockdowns were employed to examine metabolic dysregulations associated with cell type- and treatment-dependent phenotypic changes. Inhibition of key anaplerotic processes, pyruvate carboxylation (PyC) and glutaminolysis were elicited by …

Noncovalent Interactions That Tune The Reactivities Of The Flavins In Bifurcating Electron Transferring Flavoprotein, María González-Viegas, Rajiv K. Kar, Anne-Frances Miller, Maria-Andrea Mroginski

Markey Cancer Center Faculty Publications

Bifurcating electron transferring flavoproteins (Bf-ETFs) tune chemically identical flavins to two contrasting roles. To understand how, we used hybrid quantum mechanical molecular mechanical calculations to characterize noncovalent interactions applied to each flavin by the protein. Our computations replicated the differences between the reactivities of the flavins: the electron transferring flavin ( ETflavin) was calculated to stabilize anionic semiquinone (ASQ) as needed to execute its single-electron transfers, whereas the Bf flavin (Bfflavin) was found to disfavor the ASQ state more than does free flavin and to be less susceptible to reduction. The stability of ETflavin ASQ was attributed in part to …

Novel Isolation Method Reveals Sex-Specific Composition And Neurotoxicity Of Small Extracellular Vesicles In A Mouse Model Of Alzheimer’S Disease, Ahmed Elsherbini, Zhihui Zhu, Zainuddin Quadri, Simone M. Crivelli, Xiaojia Ren, Hemendra J. Vekaria, Priyanka Tripathi, Liping Zhang, Wenbo Zhi, Erhard Bieberich

Markey Cancer Center Faculty Publications

We developed a new method to isolate small extracellular vesicles (sEVs) from male and female wild-type and 5xFAD mouse brains to investigate the sex-specific functions of sEVs in Alzheimer’s disease (AD). A mass spectrometric analysis revealed that sEVs contained proteins critical for EV formation and Aβ. ExoView analysis showed that female mice contained more GFAP and Aβ-labeled sEVs, suggesting that a larger proportion of sEVs from the female brain is derived from astrocytes and/or more likely to bind to Aβ. Moreover, sEVs from female brains had more acid sphingomyelinase (ASM) and ceramide, an enzyme and its sphingolipid product important for …