Life Sciences Commons^™

Leaf, Pod And Whole Plant Tannin Contents In Pigeon Pea (Cajanus Cajan (L.) Millsp), Rodolfo Godoy, P. M. Santos, Francisco H. D. Souza

IGC Proceedings (1977-2023)

Tannin content is an important characteristic of leguminous crops and it has been used as a selection criterion in pigeon-pea improvement programmes (Godoy et al., 1994). In south-eastern Brazil, pigeon pea is often consumed by bovines in the dry season (from April though October), after flowering occurs, and is recommended in some cases, specifically for that time of the year (Lourenço et al., 1994). Since tannin content is being used as a selection criterion and the animals in the dry season preferentially eat pods and leaves, an experiment was conducted to compare whole plant, leaf and pod tannin …

Iconoclasts And Counter Terrorism Against State Organized Terror: A Study Of Perspectives In Nigerian History And Drama, Adebisi Ademakinwa, Saheed Bello

International Review of Humanities Studies

The paper assesses the issue of terrorism as a social reality present in the Nigerian state from its origination and the questions treated by the paper among others include: what dimensions did the occurrences of terrorism take on Nigerian socio-political sphere? What are the counter measures taken by individual and groups in dealing with state organized terrorism? What are the dimensions state organized terrorism take in the modern Nigerian state? Lekan Balogun‟s Ogun Skugga is used primarily while other literary works are used to supplement. The paper argues that the state organized terrorism was a surreptitious method of coercion adopted …

Cry1 Expression During Postnatal Development Is Critical For The Establishment Of Normal Circadian Period, Aaron Schirmer, Vivek Kumar, Andrew Schook, Eun Joo Song, Michael S. Marshall, Joseph S. Takahashi

Biology Faculty Publications

The mammalian circadian system generates an approximate 24-h rhythm through a complex autoregulatory feedback loop. Four genes, Period1 (Per1), Period2 (Per2), Cryptochrome1 (Cry1), and Cryptochrome2 (Cry2), regulate the negative feedback within this loop. Although these proteins have distinct roles within the core circadian mechanism, their individual functions are poorly understood. Here, we used a tetracycline trans-activator system (tTA) to examine the role of transcriptional oscillations in Cry1 and Cry2 in the persistence of circadian activity rhythms. We demonstrate that rhythmic Cry1 expression is an important regulator of circadian period. We then define a critical period from birth to postnatal day …

Activity Dynamics Of The Nucleus Accumbens Neurons During Natural And Drug Reward Seeking, Reda M. Chalhoub

MUSC Theses and Dissertations

The nucleus accumbens core (NAc) represents a major neural substrate of reward encoding that has been found to play a role in differentially regulating natural and drug rewards, including cocaine. Its constituent D1- and D2- receptor expressing medium spiny neurons (MSN) are alternatively hypothesized to have either opposing effects on reward seeking or a shared role in forming encoding “ensembles” – a sparsely activated population of neurons that encode reward associations- that coordinate behavioral responding to rewards and cues predicting reward availability. Previous methods used to study these neuronal populations failed to temporal quantify the cell-type specific activity in reward …

Characterizing Proteins That Interact With Pas Kinase, Jordan Mackay, Dr. Julianne Grose

Journal of Undergraduate Research

Characterizing the interacting protein partners of Per-Arnt-Sim (PAS) kinase has proven to be a formidable task. Since the beginning of 2012, I have been working hard with graduate student Desi DeMille on confirming the putative interactors uncovered by genetic screening done the previous year. This endeavor has yielded both successes and failures.

How ‘Bout Them Apples?: A Study On Antioxidants, Kylie Measom, Dr. Kim O'Neill

Journal of Undergraduate Research

They say “an apple a day keeps the doctor away.” Apples are laden with antioxidants which have been shown to prevent against cancer and other illnesses.¹ Antioxidants are molecules that prevent cancer by collecting excess free radicals in the body. Free radicals are highly reactive molecules. They may interfere with DNA and other biomolecules leading to DNA damage and mutations. Antioxidants prevent this by scavenging for free radicals before they can interact with other important biomolecules.² Apples, particularly the skins, have high phenolic content. Phenols are antioxidants that protect against oxidative damage caused by free radicals.³ Different …

Ebi2 Knockdown And Effects On B-Cell Migration, Jordan Mabey, Dr. Brian Poole

Journal of Undergraduate Research

B cells are specialized cells which participate in the normal immune response to an infection. As B cells encounter antigens in the body, they become activated and travel to what is known as a B cell follicle within a lymph node. At the outer follicle B cells combine with T cells and move to the inner follicle to become specialized immunity participating cells. Normally upon reaching the outer follicle, the B cell up-regulates Epstein-Barr virus induced molecule-2 (EBI2) which causes it to pause until the cell can complex with the proper T cell. Once this connection between the two cells …

Rural Development Hubs: A Possibility For Nebraska?, Marilyn R. Schlake

Cornhusker Economics

The Aspen Institute, Community Strategies Group conducted an analysis of 43 Rural Development Hubs from across the country to discover their strategies, organizational structures, regional roles, and practices. Their aim was to learn how rural regions can help investors, policymakers and other local and regional decision-makers better serve their regions. The following provides an overview of their findings detailed in the report: Rural Development Hubs: Strengthening America’s Rural Innovation Infrastructure. The report provides an opportunity for further discussion on the potential role of Rural Development Hubs in Nebraska. Rural Development Hubs are defined as a “place-rooted organization working hand-in -glove …

The Polycomb Complex 2 Contributes To Developmental Delay When Histone Methylation Is Inappropriately Inherited, Sydney Morgan- Benitez

Master of Science in Integrative Biology Theses

Histone methylation is a post-transcriptional modification to the N-terminal tails of histone core proteins that regulates DNA accessibility, and consequently, gene expression. Like DNA, histone methylation can be inherited between generations, and is highly regulated during embryonic development. At fertilization, histone methylation must undergo maternal reprogramming to reset the epigenetic landscape in the new zygote. During maternal reprogramming of histone methylation in C. elegans, H3K4me is removed by the H3K4 demethylase, SPR-5, and H3K9me is subsequently added by the histone methyltransferase, MET-2. Recently, it was demonstrated that SPR- 5 and MET-2 maternal reprogramming antagonizes the H3K36 methyltransferase, MES-4, which …

Radiofrequency Ablation As A Treatment Modality For Primary Hyperparathyroidism: A Systematic Literature Review, Peter P. Issa, Emad Kandil, Grace S. Lee

School of Medicine Faculty Publications

Background: Primary hyperparathyroidism (pHPT) is an endocrine disorder typically characterized by elevated serum calcium and elevated parathyroid hormone (PTH). While parathyroidectomy is the standard treatment, non-operative intervention such as radiofrequency ablation (RFA) has been adopted as an alternative for the management of pHPT, as it has been utilized in other endocrine glands such as thyroid and adrenal. In this literature review, we aim to evaluate the current practice of RFA for pHPT. Methods: A systematic literature search using PubMed, Web of Science, and Embase through June 2022 was conducted. Studies included in the review consisted of patient cohorts who had …

Bio 013: Writing In The Sciences - Human Origins, Esther Muehlbauer

Open Educational Resources

Bio. 013: Writing in the Sciences - Human Origins is an OER syllabus for a College Writing 2 course that develops student writing for different audiences, following the trajectory of how scientists work: Scientists Writing for themselves (a field journal); Scientists writing for other scientists (a review article); Scientists writing for society (an essay for Natural History Magazine).

Assessing The Effects Of The Irf5 Exon 1b On Translation, Jared Lambert, Dr. Brian Poole

Journal of Undergraduate Research

With our lab’s previous finding revealing a hairpin folding structure in exon 1B (IRF5 risk allele), not found in the other first exons, this project was focused towards more fully understanding the role of IRF5 exon 1B’s hairpin structure and its effect on the translation of downstream proteins. The data acquired through this project will provide much needed information regarding the mechanism through which the risk allele of IRF5 affects the development of Systemic Lupus Erythmatosus (SLE).

Literature Review—Transthoracic Echocardiography, Computed Tomography Angiography, And Their Value In Clinical Decision Making And Outcome Predictions In Patients With Covid-19 Associated Cardiovascular Complications, Jędrzej Warpechowski, Adam Olichwier, Aleksandra Golonko, Marcin Warpechowski, Robert Milewski

Department of Nutrition and Health Sciences: Faculty Publications

The sudden outbreak of the COVID-19 pandemic posed a great threat to the world’s healthcare systems. It resulted in the development of new methods and algorithms for the diagnosis and treatment of both COVID-19 and its complications. Diagnostic imaging played a crucial role in both cases. Among the most widely used examinations are transthoracic echocardiography (TTE) and computed tomography angiography (CTA). Cardiovascular complications in COVID-19 are frequently associated with a severe inflammatory response, which results in acute respiratory failure, further leading to severe complications of the cardiovascular system. Our review aims to discuss the value of TTE and CTA in …

A Remote Sensing Approach To Assess The Historical Invasion Of Phragmites Australis In A Brackish Coastal Marsh, Jason S. Hagani, John Y. Takekawa, Steven C. Chappell, Richelle L. Tanner, Adrienne R. Ernst, Karin M. Kettenring

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Introduction: Coastal estuarine wetlands provide important habitats for a variety of endemic flora and fauna but are particularly vulnerable to biological invasions. Regular monitoring of changes in these vulnerable wetlands has become increasingly important for effective management, especially considering threats from climate change effects and human disturbance. Historical analyzes of plant invasions may guide targeted management strategies to eradicate harmful species. Estimating the distribution of invasive species has never been more accessible with the improved availability of high-resolution data and innovations in remote sensing, estimating the distribution of invasive species has never been more accessible.

Methods: We assessed the spread …

Aggression And Mao-A Gene, Sacheta Sudhendra Kulkarni, Shilpa Sam S, Kishor Manohar Rao, Abhijith Devaraju

International Journal of Health and Allied Sciences

No abstract provided.

Sigma-Metric Analysis To Evaluate Quality Management Of Analytical Processes Using Rca And Qgi In A Clinical Biochemistry Laboratory, South India, Sathish Raju Nilakantam, Kusuma Kasapura Shivashankar, Akila Prashant, Melanahalli Dayananda, Suma Maduvanahalli Nataraj, Namratha G Dayananda

International Journal of Health and Allied Sciences

Introduction: This study aimed to identify laboratory errors at the earliest through Sigma-metric analysis and to evaluate quality management of analytical processes. Methods: Sigma-metrics and Quality Goal Indices (QGI) were calculated by harvesting the IQC and EQC data of an accredited laboratory for 31 biochemical parameters run on Roche Cobas6000 and e411. Those with Sigma 2 were further analysed by applying the various Westgard rules, as suggested. Results: Nearly 13 chemistry analytes showed world-class performance with Sigma > 6 and most of the immunoassay parameters showed marginal performance with sigma > 2 6. Sodium, Chloride, Total T4, Beta-HCG and TSH were found …

Effect Of Fenugreek And Curry Leaves Powder On Dyslipidemia- A Randomized Controlled Pilot Study, Syeda Farha S, Shivani Agarwal, Vanitha Reddy P

International Journal of Health and Allied Sciences

Background: Dyslipidemias, a disorder of lipid metabolism, is widely established as an independent major and modifiable risk factor of cardiovascular disease (CVD). The conditions are common worldwide and a leading cause of death in India, and has even riven the age bar swaying in young people too. The significant effect of an increase in dyslipidemias depends on diabetes and hypertension. Nutraceuticals, derived from food sources serve as an alternative therapy for the management of dyslipidemia. India is home to multitudinous medicinal plants, of which many remain underutilized. Murraya Koenigii (curry leaf) and Trigonella foenum-graecum (fenugreek leaves) are well-proven as good …

Hydrocarbons In Seawater And Fish, With A Special Focus On 16 Epa-Pahs In Marsa Matruh Sediments, Egyptian Mediterranean Sea, Tarek O. Said, Mohamed A. Okbah, Gehan M. El Zokm

Blue Economy

More emphasis is being paid to monitoring hydrocarbon levels and assessing their risk in various marine environmental matrices since they may pose a threat to biodiversity. This research highlighted hydrocarbons in the Marsa Matrouh coastal area of Egypt as the first comprehensive effort to provide a technical basis to assess and address pollution. Surficial sediments and seawater samples (in duplicate) were collected from 10 sites, Triplicate samples of nine fish species were collected from five stations (1, 3, 5, 7, 9) for THC determination. In addition, polycyclic aromatic hydrocarbons (PAHs) residues (16E PA-PAHs) were evaluated in the sediment. THC recorded …

Smokejumper Obituary: Mccormick, Michael H. (North Cascades 1956), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Determining The Role Of Kaposi’S Sarcoma-Associated Herpesvirus Lana Protein In The Development Of Persistent Infection, Jamie Gardiner, Dr. Brad Berges

Journal of Undergraduate Research

Kaposi’s Sarcoma-associated Herpesvirus (KSHV) is a human cancer virus that causes Kaposis’ sarcoma, the most common cancer found in AIDS patients. Our lab is working to develop humanized mice as a novel animal model to study KSHV infection and related diseases, since there has previously been no animal model established. The purpose of my project was to determine the role of the viral protein LANA (latencyassociated nuclear antigen) in establishing a latent KSHV infection in humanized mice. My project included two major aims:

Understanding The Molecular Targets Of Antimicrobial Chemokines, Brittany Kartchner, Dr. Eric Wilson

Journal of Undergraduate Research

For this project, I hypothesized that the amino acid composition of the C terminus of chemokine proteins allows some chemokines to bind to different sites on the bacterial cell wall and that the chemokines with a strong positive charge (CCL25 and CCL28) will bind to the same target, while CCL27, which has no positively charged C terminus region, will have a different binding site. In order to study the binding properties of each chemokine, I began by performing binding assays. In these assays, approximately 105 colony-forming units of exponentially growing bacteria were incubated on ice with the appropriate chemokine. This …

Asymmetric Event-Related Potential Priming Effects Between English Letters And American Sign Language Fingerspelling Fonts, Zed Sevcikova Sehyr, Katherine J. Midgley, Karen Emmory, Phillip J. Holcomb

Communication Sciences and Disorders Faculty Articles and Research

Letter recognition plays an important role in reading and follows different phases of processing, from early visual feature detection to the access of abstract letter representations. Deaf ASL–English bilinguals experience orthography in two forms: English letters and fingerspelling. However, the neurobiological nature of fingerspelling representations, and the relationship between the two orthographies, remains unexplored. We examined the temporal dynamics of single English letter and ASL fingerspelling font processing in an unmasked priming paradigm with centrally presented targets for 200 ms preceded by 100 ms primes. Event-related brain potentials were recorded while participants performed a probe detection task. Experiment 1 examined …

Measuring The Physiological Effects Of Methylobacterium Oryzae Foliar Inoculation Onto Salt-Stressed Tomatoes Grown In A Greenhouse Semi-Hydroponic System, Collin Dice

Master of Science in Integrative Biology Theses

Salinity stress has been shown to improve hydroponic produce quality such as that of tomato but at the trade-off of produce yield. In order to improve demand for hydroponic produce, techniques that improve salinity tolerance could offset declines in yield without altering the improved quality of produce. In two separate trials, we tested whether foliar inoculation of the ACC deaminase-producing bacteria Methylobacterium oryzae CBMB20 improved salt tolerance in tomatoes grown in a semi-hydroponic system using an indeterminate variety exposed to 26mM NaCl (Trial 1) and a determinate variety exposed to 17mM NaCl (Trial 2). We also tested how salinity and …

Identifying Proteins That Interact With Human Pas Kinase, Tacie Hall, Dr. Julianne Grose

Journal of Undergraduate Research

When PAS kinase is knocked out in mice placed on high-fat diets, these mice show such symptoms as decreased weight gain, hypermetabolic phenotype, decreased liver triglyceride accumulation, and retained insulin sensitivity when compared with their wild type littermates.¹ These symptoms are highly associated with chronic diseases commonly seen in humans today, such as diabetes, obesity, and heart disease. PAS kinase is a highly conserved protein from yeast to man which allows for the use of yeast as model organism to help discover the molecular mechanisms behind PAS kinase function. Since little is known about how PAS kinase functions, it …

Accumulation Of Attached Chemokines On Gram-Negative Bacterial Membranes, Peter Janzen, Dr. Eric Wilson

Journal of Undergraduate Research

The purpose of this project was to see if a genetic alteration to gram-negative bacteria would affect the phenotypic ability to resist the attachment of chemokines. In other words, we were trying to see if we could change the structure of a bacterium by altering the DNA. As a result of that alteration, would our immune systems fight the infection more easily with a chemokines response.

Casting For A Putative Dna Binding Sequence For Nbmp2, Brian Earley, Dr. Laura Bridgewater

Journal of Undergraduate Research

Bmp2 is a secretory mammalian protein that plays important roles in bone development and adult pathology. Recently, a nuclear variant (nBmp2) was discovered with an unknown function for this typically secretory protein in the nucleus (Felin et al., 2010). The purpose of this project is to find an in vitro DNA binding sequence for nBmp2. This discovery would lead to further research for how nBmp2 could affect transcription in vivo. However, since the conception of this CASTing project 16 months ago, I have faced challenges in plasmid construction, cell culture, and concessions with a fused nBmp2:GFP plasmid. While the plasmid …

Ex Vivo Infection And Re‐Isolation Of Human Herpesvirus 6, Stephanie Carlson, Dr. Bradford Berges

Journal of Undergraduate Research

Science rarely cooperates as anticipated, but that can often lead to unexpected insight and solution. I ran into that this semester with a certain aspect of our project. We are continuing to collect data for the American Society for Virology in late July and a future publication. We will need more replicates for a publication, but we have optimized our approach and protocol.

Genomic And Proteomic Analysis Of An Erwinia Amylovora Phage, Alicia Brighton, Dr. Julianne Grose

Journal of Undergraduate Research

Fireblight is a disease, caused by the bacteria Erwinia amylovora, that can infect some fruit trees, including apple and pear trees. When an infection occurs, the effects can be devastating—any infected part of the tree must be removed and destroyed, sometimes resulting in loss of the entire tree. Furthermore, in the warm and moist conditions typical of springtime, the spread of fireblight can be nearly impossible to control with current management methods.¹

Single-Swap Editing For The Correction Of Common Duchenne Muscular Dystrophy Mutations, Kenian Chen, Yu Zhang, Efraín Sánchez-Ortiz, Adeeb Alomar, Lin Xu, Ning Liu, Rhonda Bassel-Duby, Eric N Olson

Faculty, Staff and Student Publications

Duchenne muscular dystrophy (DMD) is a fatal X-linked recessive disease of progressive muscle weakness and wasting caused by the absence of dystrophin protein. Current gene therapy approaches using antisense oligonucleotides require lifelong dosing and have limited efficacy in restoring dystrophin production. A gene editing approach could permanently correct the genome and restore dystrophin protein expression. Here, we describe single-swap editing, in which an adenine base editor edits a single base pair at a splice donor site or splice acceptor site to enable exon skipping or reframing. In human induced pluripotent stem cell-derived cardiomyocytes, we demonstrate that single-swap editing can enable …

Use Of Highway Infrastructure By Bats: A Literature Review And Survey Of The Trans-Pecos Region Of Texas, Holly G. Wilson, Stirling J. Robertson, Richard D. Stevens

Western North American Naturalist

Bats are important components of nature and provide both monetary and nonmonetary benefits to mankind. While anthropogenic effects on wildlife and their habitats are typically viewed as negative, highway infrastructure might benefit numerous species of plants and animals, bats in particular. Cracks, crevices, and grooves within structures provide places for bats to roost. Here we review the literature on this topic as well as describe results of our own survey of bridges and culverts in the Trans-Pecos of Texas. We surveyed 204 bridges and 768 culverts between 2018 and 2019. We observed 7 species of bats using bridges or culverts …