Life Sciences Commons^™

Radiomic And Deep Learning Characterization Of Breast Parenchyma On Full Field Digital Mammograms And Specimen Radiographs: A Pilot Study Of A Potential Cancer Field Effect, Isaiah Yim, Gary J Whitman, Randa El-Zein, Isabelle Bedrosian, Maryellen L Giger

Faculty, Staff and Student Publications

PURPOSE: In women with biopsy-proven breast cancer, histologically normal areas of the parenchyma have shown molecular similarity to the tumor, supporting a potential cancer field effect. The purpose of this work was to investigate relationships of human-engineered radiomic and deep learning features between regions across the breast in mammographic parenchymal patterns and specimen radiographs.

APPROACH: This study included mammograms from 74 patients with at least 1 identified malignant tumor, of whom 32 also possessed intraoperative radiographs of mastectomy specimens. Mammograms were acquired with a Hologic system and specimen radiographs were acquired with a Fujifilm imaging system. All images were retrospectively …

Promoting Insect Farming And Household Consumption Through Agricultural Training And Nutrition Education In Africa: A Study Protocol For A Multisite Cluster-Randomized Controlled Trial, Mohammed Hussen Alemu, Afton Halloran, Søren Bøye Olsen, Jacob Paarechuga Anankware, Philip Nyeko, Monica Ayieko, Evans Nyakeri, John Kinyuru, Silvenus Konyole, Saliou Niassy, James Peter Egonyu, Geoffrey Maxwell Malinga, Jeremiah Ng'ang'a, Charles Adino Ng'ong'a, Nicky Okeyo, Shadrack Kwaku Debrah, Samuel Kiiru, Amos Acur, Nanna Roos

All Peer-Reviewed Publications

Background Edible insects are a sustainable source of high-quality animal protein. Insect farming is gaining interest globally, particularly in low-income countries, where it may provide substantial nutritional and economic benefits. To enhance insect farming practices in Africa, new farming systems are being developed. However, knowledge on how to best promote uptake of these systems is lacking. This study aims to fill this gap by investigating the effectiveness of educational interventions in promoting insect farming for household consumption in Africa. Method The study is designed as a multi-site randomized controlled trial to evaluate the impacts of agricultural training alone or in …

Alcapa – A Rare Cause Of Effort Angina In An Adult: A Case Report, Henita Joshna Menezes, Raghav R. Nagpal, Sonia R B D'Souza, Ramachandran Padmakumar

Manipal Journal of Nursing and Health Sciences

Introduction: ALCAPA – ‘Anomalous Left Coronary Artery from the Pulmonary Artery’, it is an infrequent congenital cardiovascular abnormality distinguished by the ‘left coronary artery’ originating from the ‘pulmonary artery’ in place of its normal origin, the aorta. Failing to treat this critical condition, might result in myocardial ischemia, left ventricular dysfunction, and a risk of sudden heart-related death.

Clinical manifestations: Exertional chest pain and fatigue since 6 months.

Diagnosis, therapeutic intervention, and outcomes: The diagnosis was established with the help of transoesophageal echocardiography and coronary angiogram. Surgical repair by Left Coronary Artery reimplantation was done with a successful outcome.

Conclusion: …

Life Cycle Assessment Of Calcium Oxide Pretreatment Of Corn Stover With Carbon Dioxide Neutralization For Ethanol Production, Jikai Zhao, Danyi Feng, Juhee Lee

School of Earth, Environmental, & Marine Sciences Faculty Publications

This work used life-cycle assessment (LCA) to determine the environmental and human health impacts of four ethanol production scenarios (S1: CaO pretreatment + H2SO4 neutralization + C6 yeast fermentation; S2: CaO pretreatment + CO2 neutralization + C6 yeast fermentation; S3: CaO pretreatment + H2SO4 neutralization + C6/C5 yeast fermentation; and S4: CaO pretreatment + CO2 neutralization + C6/C5 yeast fermentation), with the functional unit being 1 kg of 95 % ethanol. The LCA results showed that the total ozone depletion, global warming potential, smog, acidification, eutrophication, and ecotoxicity values were comparable when CO2 or H2SO4 were used to adjust the …

2022 Soybean Insect Losses In The United States, Fred R. Musser, Emily Bick, Sebe A. Brown, Whitney D. Crow, Jeffrey A. Davis, Christina Difonzo, Scott H. Graham, Jeremy K. Greene, Dalton C. Ludwick, Sean Malone, David Owens, Dominic D. Reisig, Phillip M. Roberts, Tom A. Royer, Nicholas J. Seiter, Adam J. Sisson, Benjamin C. Thrash, Kelley J. Tilmon, Raul T. Villanueva

Midsouth Entomologist

Estimated insect management costs and losses due to insects and other invertebrates in soybean during the 2022 growing season were collected and compiled from 18 states to provide a record of insect pressure and management practices for the year. These annual estimates provide a historical record of pest pressure and insect management and have been compiled in some states since 2004. Participating states represented 52% of soybean acreage grown in the United States, with near 100% participation in southern states. Overall, the stink bug complex was the costliest insect pest in soybean followed by corn earworm and soybean looper. Total …

The Promise And Future Of Radiomics For Personalized Radiotherapy Dosing And Adaptation, Rachel B Ger, Lise Wei, Issam El Naqa, Jing Wang

Faculty, Staff and Student Publications

Quantitative image analysis, also known as radiomics, aims to analyze large-scale quantitative features extracted from acquired medical images using hand-crafted or machine-engineered feature extraction approaches. Radiomics has great potential for a variety of clinical applications in radiation oncology, an image-rich treatment modality that utilizes computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography (PET) for treatment planning, dose calculation, and image guidance. A promising application of radiomics is in predicting treatment outcomes after radiotherapy such as local control and treatment-related toxicity using features extracted from pretreatment and on-treatment images. Based on these individualized predictions of treatment outcomes, radiotherapy …

Invited Commentary: Mri Clear Cell Likelihood Score For Indeterminate Solid Renal Masses: Is There A Path For Broad Clinical Adoption?, Ivan Pedrosa

Faculty, Staff and Student Publications

No abstract provided.

The Time-Course Of Cancer Cachexia Onset Reveals Biphasic Transcriptional Disruptions In Female Skeletal Muscle Distinct From Males, Francielly Morena, Seongkyun Lim, Ana Regina Cabrera, Eleanor R. Schrems, Ronald G. Jones, Megan E. Rosa-Caldwell, Tyrone A. Washington, Kevin A. Murach, Nicholas P. Greene

Health, Human Performance and Recreation Faculty Publications and Presentations

Background

Cancer-cachexia (CC) is a debilitating condition affecting up to 80% of cancer patients and contributing to 40% of cancer-related deaths. While evidence suggests biological sex differences in the development of CC, assessments of the female transcriptome in CC are lacking, and direct comparisons between sexes are scarce. This study aimed to define the time course of Lewis lung carcinoma (LLC)-induced CC in females using transcriptomics, while directly comparing biological sex differences.

Results

We found the global gene expression of the gastrocnemius muscle of female mice revealed biphasic transcriptomic alterations, with one at 1 week following tumor allograft and another …

Do Species Matter? Examining The Niche Of White Ash (Fraxinus Americana L.) And Estimating Potential Subcanopy Effects Of Its Loss In North-Temperate Forests, Elizabeth Anne Studer

Dartmouth College Ph.D Dissertations

To understand the downstream consequences of the extinction of a species, we must understand its role in an ecosystem. With the impending extirpation of ash (Fraxinus spp.) due to the invasive emerald ash borer (Agrilus planipennis), understanding the role of ash trees is critical to predicting whether its loss will precipitate further species declines and/or ecosystem functions. We evaluated whether subcanopy microbial, invertebrate, and floral communities under four tree species (white ash, American beech, yellow birch, sugar maple) and on two soil hydropedological types (Bh podzol and Typical podzol) varied in species richness, composition, and functional traits in a factorial …

Smokejumper Obituary: Knapp, Byron H "Skip" (Pilot 0000), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Smokejumper Magazine, July 2023, National Smokejumper Association

Smokejumper and Static Line Magazines

Message from the President; Denali, the Great One—An Early Ascent of North America's Highest Peak; The Jump List; Motorcycles Are Not Approved for Packouts; Randy Hurst; Small Town Connections; Lost Horizons; Odds and Ends; Whites OFF The Breaks; Moose Tracks in the Timber; Notes from the Ranks; Sounding Off from the Editor; Jack Demmons Remembered; Fighting Wildfire During Extreme Burning Conditions; "Too Steep and Too Rough"; Off the List; Not Forgotten; Public Involvement; So - Is There a Fee?; Fire Jumps in One Season; The Legend of Black Water Canyon;

The Sound Of Geological Targets On Mars From The Absolute Intensity Of Laser-Induced Sparks Shock Waves, C. Alvarez-Llamas, J. Laserna, J. Moros, P. Purohit, L. García-Gómez, S. M. Angel Ph.D., P. Bernardi, B. Bousquet, A. Cadu, E. Dauson, O. Forni, T. Fouchet, O. Gasnault, X. Jacob, G. Lacombe, N. L. Lanza, C. Larmat, J. Lasue, R. D. Lorenz, P. Y. Meslin, D. Mimoun, F. Montmessin, N. Murdoch, A. M. Ollila, P. Pilleri, N. Randazzo, A. L. Reyes-Newell, S. Schröder, A. Stott, J. Ten Cate, A. Udry, D. Vogt

Faculty Publications

Inspection of geological material is one of the main goals of the Perseverance rover during its journey across the landscape of the Jezero crater in Mars. NASA's rover integrates SuperCam, an instrument capable of performing standoff characterization of samples using a variety of techniques. Among those tools, SuperCam can perform laser-induced breakdown spectroscopy (LIBS) studies to elucidate the chemical composition of the targets of interest. Data from optical spectroscopy can be supplemented by simultaneously-produced laser-produced plasma acoustics in order to expand the information acquired from the probed rocks thanks to the SuperCam's microphone (MIC) as it can be synchronized with …

Long-Chain Fatty Acid Sensing And Catabolism In Commensal Escherichia Coli Impact Murine Gut Colonization, Tessa Carolina Cox

Theses and Dissertations

The gastrointestinal tract is home to trillions of microbes that collectively influence host physiology, immunity, nutrient metabolism, and infectious disease. The overgrowth of naturally-occurring Escherichia coli in the gut is a common signifier of microbiome dysfunction and occurs in many chronic diseases including obesity. Recent studies have shown that higher fat intake is associated with increased gut E. coli growth. However, it remains unknown whether gut E. coli utilize lipids such as long chain fatty acids (LCFAs) as carbon sources to colonize the mammalian gut. Therefore, the central objective of my dissertation was to utilize bacterial genetics and various mouse …

Leveraging Church Environments To Promote Rural Physical Activity And Healthy Eating, Kelsey Rothera Day

Theses and Dissertations

Rural residents experience a greater burden of chronic disease related to physical inactivity and poor diet than their urban counterparts. A promising strategy to improve these health behaviors in rural areas is to leverage existing structures that may support physical activity and healthy eating, such as churches, in public health interventions. Three studies were conducted as part of this dissertation. They were designed to: 1) examine whether the walkability and healthy food density of neighborhoods surrounding rural and urban churches are associated with race, socioeconomic status, and rural/urban status; 2) examine rural church leaders’ views on the role of faith-based …

Sleep, Physical Activity, And Sedentary Time In The First Year Postpartum, Erin Elizabeth Kishman

Theses and Dissertations

The postpartum period is a unique time for women, where many women experience changes in sleep and activity patterns. Sleep, physical activity, and sedentary time have all been associated with health outcomes, but there is limited research on how these behaviors change throughout the postpartum period. The purpose of the first aim (Study 1) of this dissertation was to examine trajectories of sleep characteristics in Black and White women during the first year postpartum and to examine if there were any racial differences. The purpose of the second aim (Study 2) was to examine trajectories of the percentage of time …

Mechanisms Of Social Stress Susceptibility And Resilience In Female Rats, Brittany Sara Pate

Theses and Dissertations

Social stress is the most common form of stress humans experience and often precipitates the onset of several comorbidities, including anxiety, depression, post-traumatic stress disorder, and cardiovascular diseases. While many individuals experience social stress and can respond, cope, and recover, some individuals are more likely to develop subsequent health conditions. Importantly, women are particularly susceptible to stress-related disorders, and the prevalence rates for these comorbid conditions are 2-3-fold higher among females compared to males. Epidemiological data suggest that cycling ovarian hormones may play a role in promoting stress susceptibility in females. Therefore, the current studies aimed to examine the effects …

Molecular Mediators Of Axonal Transport And Local Translation Of Cdc42, Rhoa Molecular Mediators Of Axonal Transport And Local Translation Of And Calreticulin Mrnas And Their Implications For Axon Growth And Regeneration, Matthew Davis Zdradzinski

Theses and Dissertations

Neurons are highly polarized cells with expansive cytoplasmic processes, axons and dendrites, which create unique subcellular domains. Localization and translation of mRNAs in these subcellular regions is now recognized as a critical mechanism through which polarized cells establish and maintain the specialized domains that are needed for their functions. RNA profiling studies have uncovered hundreds to thousands of mRNAs in axons and these axonal mRNA profiles differ across neuronal populations, physiological conditions, and developmental growth states. Functionally organizing these mRNA populations into cohorts of coregulated mRNAs via RNA binding proteins allows us to better understand how the transcriptome is regulated …

The Effects Of Variations In Light And Nutrient Availability On Phytoplankton And Zooplankton, Jake Anthony Swanson

Theses and Dissertations

Aquatic ecosystems experience a wide range of variation in resource availability; two of the resources that are most essential to phytoplankton and zooplankton are light and nutrients. Light can vary in both its color and intensity; these variations can directly impact phytoplankton by altering the amount and color of light available for photosynthesis. Nutrient variability, particularly increases in nutrient levels, also alter phytoplankton communities by favoring the growth of certain taxa such as cyanobacteria.

To understand whether phytoplankton respond differently to changes in light availability I investigated whether the diversification of cryptophytes, phytoplankton with diverse light-capturing pigments, showed evidence of …

Modulation Of Eif2Α Signaling And The Integrated Stress Response By Targeted Therapeutic Attenuation Of Pkr Activity Contributes To Protection Of Dyt-Prkra Cells From Apoptosis, Kenneth L. Frederick

Theses and Dissertations

Luteolin is a natural flavonoid present in vegetables, fruits, and medicinal herbs that possesses anti-oxidative, anti-cancer, and anti-inflammatory properties. In this study, we investigated the effect of luteolin on the integrated stress response (ISR), which is an evolutionarily conserved intracellular signaling network essential for adapting to environmental stresses to maintain healthy cells. Dysregulated ISR is involved in the etiology of many human diseases including the movement disorder DYT-PRKRA which is caused by mutations in the PRKRA gene. PRKRA encodes for PACT, the protein activator of interferon-induced, double-stranded RNA (dsRNA)-activated protein kinase PKR.PACT-mediated PKR activation regulates the …

Predictors Of Driving Performance Post-Stroke, Halle Elise Prine

Theses and Dissertations

Driving is a complex skill involving the interaction of various brain functions, making it challenging to determine the independent contributions of each process to driving proficiency. While past studies have identified assessments such as the Useful Field of View Test (UFOV) and the Trial Making Test (TMT) as strong predictors for driving skills, little research has explored the impact of visual search and movement inhibition on driving after stroke. This cross-sectional study includes participants between the ages of 21 to 80 years with residual disability caused by a unilateral middle cerebral artery stroke at least six months prior. The participants …

Effects Of Caffeine On Measures Of Clinical Outcome And Recovery Following Mild Traumatic Brain Injury In Adolescents, Jacob Michael Eade

Theses and Dissertations

OBJECTIVE: The overarching purpose of this study was to investigate the influence of habitual caffeine consumption on mTBI outcomes in adolescents. BACKGROUND: Adolescents who suffer an mTBI have an increased risk for neurological impairment and symptomology. Thus, it is important to elucidate modifiable lifestyle factors that have the potential to influence injury outcomes and recovery. Caffeine is a legal psychoactive compound prevalent among the adolescent population. Marketed as an ergogenic aid caffeine coincides with recreational activities where incidence of mTBI is high. However, no human study has explored the influence of caffeine consumption on mTBI pathology. It was hypothesized that …

The Role Of Environmental Context In Supporting Children’S 24- Hour Movement Behaviors; A Positive Deviance Perspective, Roddrick Dugger

Theses and Dissertations

Background: During summer, children display less favorable movement behaviors than the school year. To investigate the role of environmental context in supporting children’s ability to meet the 24-hour Movement Guidelines (i.e., Moderate-to-Vigorous Physical Activity: ≥ 60 minutes, Sleep duration: 9-11 hours, Screen Time: ≤ 2 hours), this dissertation had three primary aims: 1) Utilize the Positive Deviance Framework to identify unique practices and resources that enabled children to meet guidelines, 2) Examine potential associations between the neighborhood built and social environment with movement behaviors by household poverty experience, and 3) Identify specific features of the family and home environment that …

Evaluating Drill Interseeded Cover Crop Establishment And Nitrogen Impact In Irrigated Corn, Victor De Sousa Ferreira

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

The adoption of cover crops as a strategy to improve soil health and cropping systems sustainability is on the rise in the United States. PRE herbicides with soil residual activity are widely applied in corn production systems to prevent early season weed development, crop-weed competition, and yield loss. When preemergence herbicides are applied in the field, the active ingredients remain in the soil rhizosphere for a period of time, killing weed seedlings as they emerge. However, PRE herbicides can also impact the establishment of interseeded cover crops. Greenhouse bioassay was conducted to evaluate the preemergence herbicide carry-over potential to interseeded …

Cellulosome-Forming Modules In Gut Microbiome And Virome, Jerry Akresi

Department of Food Science and Technology: Dissertations, Theses, and Student Research

Cellulosomes are large multi-enzyme complexes encoded in the genomes of some microorganisms. Cellulosomes can degrade plant cell wall celluloses, commonly found in compost soils, forest floors and dietary fibers of farm animals. The hallmarks of cellulosome complexes are cohesins that form a large scaffoldin protein and dockerins that interact with cohesin to dock enzymes onto the scaffoldin. The dockerin-containing proteins often contain Carbohydrate Active Enzymes (CAZyme) domains, predominantly the cellulases (e.g., GH48 and GH9 enzymes), which enable them to break down celluloses. A fascinating question is, has Nature also evolved other similar protein complexes that target other types of complex …

Studies Of The Role Of Mtorc1 In Modulating Intestinal Epithelial Barrier Function, Isaac Adediji

Department of Nutrition and Health Sciences: Dissertations, Theses, and Student Research

Mechanistic target of rapamycin complex 1 (mTORC1) signaling impacts intestinal inflammation by modulating the production of cytokines in both intestinal epithelial cells and macrophages. Recent evidence revealed that THP-1-derived macrophages with elevated mTORC1 activity (THP-1shTSC2 macrophages), exhibited increased proinflammatory cytokine production when stimulated with lipopolysaccharide (LPS) compared to counterpart macrophages with repressed or baseline mTORC1 activity. Furthermore, it has been shown that mTORC1 governs intestinal barrier function as evidenced by elevated transepithelial electrical resistance (TEER) and para/transcellular permeability in Raptor-depleted Caco-2 cells (cells with repressed mTORC1 activity) compared to Caco-2 cells with elevated or baseline mTORC1 activity. The present study …

Decision Rules For Egg-Color-Based Rejection By Two Cavity-Nesting Hosts Of The Brown-Headed Cowbird, Alexander J. Di Giovanni, Juliana Villa, Mark T. Stanback, Charles F. Thompson, Scott K. Sakaluk, Mark E. Hauber, Daniel Hanley

Faculty Publications – Biological Sciences

Hosts of obligate avian brood parasites often evolve defense mechanisms to avoid rearing unrelated young. One common defense is egg rejection, for which hosts often rely on eggshell color. Most research has assumed that hosts respond to perceived color differences between their own eggs and parasite eggs regardless of the particular color; however, recent experiments have found that many hosts respond more strongly to brown foreign eggs than to equally dissimilar blue eggs. Yet, none of these prior studies tested a brown-egg-laying species and, with only one exception, all were conducted in open nests where light levels are considered sufficient …

Comparative Genome-Wide Analysis Of Micrornas And Their Target Genes In Roots Of Contrasting Indica Rice Cultivars Under Reproductive-Stage Drought, Simardeep Kaur, Karishma Seem, Suresh Kumar, Rakesh Kaundal, Trilochan Mohapatra

Plants, Soils and Climate Student Research

Recurrent occurrence of drought stress in varying intensity has become a common phenomenon in the present era of global climate change, which not only causes severe yield losses but also challenges the cultivation of rice. This raises serious concerns for sustainable food production and global food security. The root of a plant is primarily responsible to perceive drought stress and acquire sufficient water for the survival/optimal growth of the plant under extreme climatic conditions. Earlier studies reported the involvement/important roles of microRNAs (miRNAs) in plants’ responses to environmental/abiotic stresses. A number (738) of miRNAs is known to be expressed in …

Creativity In Energy Balance, Obesity And Feeding Behavior Research, Some Thoughts, Stephen J French, David B Allison

Children’s Nutrition Research Center Staff Publications

This review provides an overview of examples of especially creative work related to the fields of ingestive behavior, energetics (defined as the study of the acquisition, storage, and use of metabolizable energy by biological organisms and the causes and consequences of such acquisition, storage, and use), and nutrition, focusing on both individual works and discoveries, as well as bodies of works and in some cases the working styles of particular scientists. The paper then discusses some principles extracted from our observations as well as from the literature on creativity pointing out some factors that seem to make for more creative …

International Society Of Sports Nutrition Position Stand: Coffee And Sports Performance, Lonnie M. Lowery, Dawn E. Anderson, Kelsey F. Scanlon, Abigail Stack, Guillermo Escalante, Sara C. Campbell, Chad M. Kerksick, Michael T. Nelson, Tim N. Vandusseldorp, Douglas S. Kalman, Bill I. Campbell, Richard B. Kreider, Jose Antonio

Faculty Scholarship

Based on review and critical analysis of the literature regarding the contents and physiological effects of coffee related to physical and cognitive performance conducted by experts in the field and selected members of the International Society of Sports Nutrition (ISSN), the following conclusions represent the official Position of the Society:

(1) Coffee is a complex matrix of hundreds of compounds. These are consumed with broad variability based upon serving size, bean type (e.g. common Arabica vs. Robusta), and brew method (water temperature, roasting method, grind size, time, and equipment).

(2) Coffee’s constituents, including but not limited to caffeine, have neuromuscular, …

Evaluating The Use And Performance Of Marine Protected Areas To Conserve Reef Fish Biodiversity In The Caribbean, Mathias Tjarko Cramer

Theses and Dissertations

Reef fishes are an integral part of life in the Caribbean, fulfilling essential roles in their native marine ecosystems and the many human communities that neighbor them. Perhaps most directly to humans, reef fishes and their fisheries are an essential source of dietary protein, and further support local human communities through employment opportunities. More indirectly, reef fishes fulfill numerous ecological roles that help maintain their native reef ecosystems, which, in turn, confer benefits to humans. For example, a recent analysis estimated that every square kilometer of coral reef generates an average annual income of $473,000 (USD), which would represent 23 …