Life Sciences Commons^™

Recreational Fishing For Western Rock Lobster: Estimates Of Participation, Effort And Catch In 2022/23, Claire B. Smallwood, Karina L. Ryan, Alissa C. Tate, Lucy J. Rudd

Fisheries Research Reports

The Western Rock Lobster (WRL) (Panulirus cygnus) is the most commonly caught Rock Lobster (RL) species in Western Australia. Catches from the commercial and recreational sectors are required to determine and monitor Total Allowable Commercial Catch (TACC), Total Allowable Recreational Catch (TARC) and proportion of Allowable Harvest Level (AHL) achieved. The TARC is set at 5% of the AHL and evaluated in the harvest strategy based on a 5-year average. Data for the recreational sector are obtained using phone-recall surveys to provide estimates of participation, fishing effort and retained catch (by numbers) from recreational fishers who hold a RL licence. …

Visual Complexity Of The Time-Frequency Image Pinpoints The Epileptogenic Zone: An Unsupervised Deep-Learning Tool To Analyze Interictal Intracranial Eeg, Sarvagya Gupta

Graduate Masters Theses

Epilepsy, a prevalent neurological disorder characterized by recurrent seizures, continues to pose significant challenges in diagnosis and treatment, particularly among children. Despite substantial advancements in medical technology and treatment modalities, localization of the part of brain that causes seizures (Epileptogenic Zone) remains a difficult task. Intracranial EEG (iEEG) is often used to estimate the epileptogenic zone (EZ) in children with drugresistant epilepsy (DRE) and target it during surgery. Conventionally, iEEG signals are inspected in the time domain by human experts aiming to locate epileptiform activity.

Visual scrutiny of the iEEG time-frequency (TF) images can be an alternative way to review …

Assessment Of Dicamba And 2,4-D Residues In Palmer Amaranth And Soybean, Maria Leticia Zaccaro-Gruener, Jason K. Norsworthy, Leonard B. Piveta, L. Tom Barber, Andronikos Mauromostakos

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Off-target movement of 2,4-D and dicamba is sometimes to blame as the cause of symptoms observed in weeds growing in production fields. Pesticide regulatory authorities routinely sample tissues of weeds or crops from fields under investigation for potential illegal use of auxin herbicides. This research aimed to determine if analytical tests of herbicide residue on soybean or Palmer amaranth vegetation treated with dicamba or 2,4-D could be used to differentiate between rates applied and how the residue levels decay over a 1-mo interval. Four rates of each herbicide (1X, 0.1X, 0.01X, and 0.001X) were applied, with a 1X rate of …

The Effect Of Entrepreneurial Traits On Career Planning In Food Processing Enterprises, Ali S. Cetinkaya

University of South Florida (USF) M3 Publishing

Economic, social, and technological changes create new demands and opportunities for people's jobs. Entrepreneurship is one way to deal with these demands and take advantage of new opportunities. Career planning assists an individual in becoming aware of various career options, including entrepreneurial intent. Even if they have all of the necessary resources, not everyone wants to start a new business. Some people have specific entrepreneurial characteristics that motivate them to pursue a career investing in new businesses. The purpose of this study was to determine the impact of individuals' entrepreneurial traits on their career planning. The survey technique was used …

Examining Potential Trade-Offs Between Pest Management And Pollination To Sunflower Production In Nebraska, Luis Ochoa Cadena

Department of Entomology: Dissertations, Theses, and Student Research

Sunflower (Helianthus annuus) is cultivated for oil and seed production worldwide, and the United States produces 2.5% of the world’s oilseed sunflower primarily grown in the Great Plains. In 2022, oilseed and confectionary U.S. sunflower production increased by 48 and 44%, respectively, compared to last year's records. However, sunflower production can be seriously compromised by insect pests. The red sunflower seed weevil (Smicronyx fulvus LeConte) is considered the most serious pests in North America and causes severe economic damage yearly. On the other hand, native bees contribute substantially to sunflower yield. Currently, insecticide applications are the primary tool to suppress …

Exploring Experimental Design And Multivariate Analysis Techniques For Evaluating Community Structure Of Bacteria In Microbiome Data, Kelsey Karnik

Department of Statistics: Dissertations, Theses, and Student Research

The gut microbiome plays a crucial role in human health, and by working collaboratively with microbiologists, we aim to further our understanding of the human gut and its impact on human health. Promoting a diverse microbiome is emphasized throughout microbiology literature, and involving a statistician in designing experiments to relate gut bacteria and some measured health outcome is crucial for ensuring valid and accurate results. By adopting new experimental design and analysis methods, researchers can begin to gain a deeper understanding of how the genetics of our food affect the composition of taxa within the gut microbiome. This dissertation is …

The Effects Of Betaine Supplementation On Fluid Balance And Heat Tolerance During Passive Heat Stress In Men, Brandon D. Willingham, Liliana I. Rentería, Tristan J. Ragland, Michael J. Ormsbee

Kinesiology

Introduction: Consuming intracellular osmolytes, like betaine (BET), may attenuate symptoms of heat stress. The purpose of this study was to examine the effects of BET supplementation on fluid balance and heat tolerance after a 7-day loading period and during passive heat exposure. Methods: A double-blind, placebo controlled, crossover study compared BET or placebo consumption (50 mg·kg⁻¹, twice daily) for 7 days in young, recreationally active men (N = 11). Results: During the loading period, no significant interactions were found for any marker of fluid balance between or within conditions. During heat exposure, significant time effects but no condition …

Vegetation Survey Data For Spring Run Experimental Site, Valerie N. Thurston, Ryan W. Mcewan, Anna R. Pallone, Mary C. Lloyd

Data Files: Ecosystem Restoration Following Industrial Agriculture

This spreadsheet is the percent cover of each species surveyed in the Spring Run experimental restoration site (39° 46 '42.2"N, 84° 20' 52.5"W) collected at the quadrat level.

DOI: https://doi.org/10.26890/fdw4698

Investigating And Characterizing Septin Cellular Regulators During Infection Related Development In M. Oryzae, Rinalda Proko

Graduate Theses and Dissertations

The fungus Magnaporthe oryzae causes a devastating disease of rice and wheat, called blast, which poses a major threat to food security across the planet. To enter plant tissue, M. oryzae produces a remarkable pressure-generating infection cell called an appressorium, which mechanically ruptures the tough cuticle of host leaves through the application of enormous physical force directed onto a narrow penetration structure emerging from its base. Importantly, appressorium form and functionality depends on the regulated assembly of a toroidal ring-like structure, composed of septins, which forms within its base. Septins are a family of membrane-associated GTP-binding proteins that polymerize into …

Screening A Set Of Tomato Genotypes For Resistance To Bacterial Wilt And A Genomic Wide Association Study And Genomic Prediction For Yield-Related Traits In ‘Lcp 85-384’. I. Sugarcane, Theresa Makawa Phiri

Graduate Theses and Dissertations

This thesis comprises two studies that focused on screening tomato genotypes for bacterial wilt resistance and a genome-wide association study and genomic prediction for yield-related traits in sugarcane with the aim of contributing to the breeding programs. In the first chapter, 40 tomato accessions from the USDA collection were evaluated for their resistance to Ralstonia solanacearum isolate P822 under controlled greenhouse conditions. The plants were inoculated, and disease symptoms were visually assessed. Disease severity was rated on a scale of 0 to 4, where 0 represented no wilting and 4 indicated complete leaf wilting. Among the tested accessions, five (PI …

B. R. Wells Arkansas Rice Research Studies 2022, J. Hardke, X. Sha, N. Bateman

Arkansas Agricultural Experiment Station Research Series

Arkansas is the leading rice producer in the United States. The state represents 50.1% of total U.S. rice production and 49.8% of the total acres planted to rice in 2022. Rice cultural practices vary across the state and across the U.S. However, these practices are also dynamic and continue to evolve in response to changing political, environmental, and economic times. This survey was initiated in 2002 to monitor and record changes in the way Arkansas rice producers approach their livelihood. The survey was conducted by polling county extension agents in each of the counties in Arkansas that produce rice. Questions …

Utilizing Crispr Cas9 To Visualize Dopamine Receptors In Caenorhabditis Elegans, Lauren Michelle Velasquez

Electronic Theses, Projects, and Dissertations

Dopamine (DA) is a neurotransmitter with imperative implications in many functions including movement, reward, and cognition. Studying the pathways of dopaminergic neurons at multiple levels allows us to understand the ways in which these systems can go wrong. We study dopamine in a model system such as the worm Caenorhabditis elegans because of its relatively simple and well-characterized nervous system. DA is involved in regulating chemosensory behaviors in worms. The purpose of this research project is to definitively answer the following question: Are the dopamine receptors DOP-1 and DOP-4 expressed in chemosensory neurons? Previous reporter assays show that neither of …

Hsp70 And Hsp22 As Toxicity Bioreporters In Drosophila Melanogaster, Zakkary Hudson

Electronic Theses, Projects, and Dissertations

Of the over 80,000 chemicals used commercially in the United States, few have had sufficient safety and toxicological information collected. To further reduce animal usage, methods that will lessen reliance upon traditional animal toxicology testing and increase the usage of alternative, high throughput toxicology screening methods are being explored. One such method is the utilization of biomarkers and bioreporters in model organisms such as Drosophila melanogaster. The biomarkers, HSP22 and HSP70 have been successfully utilized in various studies involving Drosophila melanogaster bioreporter constructs to evaluate chemical toxicity. In this study, both an in vivo and in vitro HSP22 and …

Studying The Stability Of Collagen/Heparin Coatings To Be Used In Cell Therapy Applications, Gavin Mussino

Biological Sciences Undergraduate Honors Theses

This honors thesis aims to investigate the reusability and performance of cell coatings for cell therapy applications. Cell therapy, which involves the use of human cells to repair or replace damaged tissues, holds immense potential for medical advancements. However, ensuring the survival and functionality of transplanted cells remains a significant challenge. We focused on studying the effectiveness of coatings applied to cells for improved cell growth and viability. The research project involved the preparation of the coatings using a layer-by-layer method and the subsequent seeding of cells. The coated cells were then subjected to a series of experiments to assess …

Anything But Bland: Uncovering The Hidden Diversity And Genomic Origin Of The Threatened Vanilla Spice, Paige Ellestad

Boise State University Theses and Dissertations

Conserving the genetic diversity of crop species and their wild relatives has become a mounting concern as the detrimental effects of climate change, habitat destruction, and genetic erosion are being realized. In this epoch of unprecedented biodiversity loss, the genetic resources needed to improve crops may be at risk of extinction. Even one of the most iconic spices, vanilla, is threatened. Wild populations of the main vanilla producing species, Vanilla planifolia Andrews (Orchidaceae), are being rapidly extirpated due to deforestation and illegal harvesting in their native range. On top of that, clonal propagation methods within cultivated plants are hypothesized to …

Age-Related Differences In Kinematics, Kinetics, And Muscle Synergy Patterns Following A Sudden Gait Perturbation: Changes In Movement Strategies And Implications For Fall Prevention Rehabilitation, Woohyoung Jeon, Ahmed Ramadan, Jill Whitall, Nesreen Alissa, Kelly Westlake

Health & Kinesiology Faculty Publications and Presentations

Falls in older adults are leading causes of fatal and non-fatal injuries, negatively impacting quality of life among those in this demographic. Most elderly falls occur due to unrecoverable limb collapse during balance control in the single-limb support (SLS) phase. To understand why older adults are more susceptible to falls than younger adults, we investigated age-related differences in lower limb kinematics, kinetics, and muscle synergy patterns during SLS, as well as their relationship to postural control strategies. Thirteen older and thirteen younger healthy adults were compared during the SLS phase of balance recovery following an unexpected surface drop perturbation. Compared …

Visual Circuitry In Adaptive Behavior: Extraction Of Complex Visual Image Information By Arrays Of Non-Image Forming Eyes, Thomas Kipp Halladay Groves

Dissertations

A complete understanding of how neural circuitry underlies the detection and integration of visual cues continues to elude researchers in the 21st century. Since the dawn of life on earth, light has exerted enormous selective pressure on all living organisms. Visual systems represent one of the most common sensory systems in existence, with significant homologies among elements of these systems, such as photopigments and developmental genes. Offering nearly unmatched single cell access at all levels of its nervous system, the European medicinal leech (Hirudo spp.) is an excellent system in which to identify behaviorally relevant neuronal circuits. Hirudo evolved discrete …

Integrating Sensor Development, Risk Assessment, And Community Engagement To Support Environmental Justice In The Rural Community Of El Tiple, Colombia, David Bahamon Pinzon

All Dissertations

In Colombia, ethnic communities have traditionally been responsible stewards of natural resources. They recognize the importance of these resources for their livelihood, as well as their ancestral and cultural heritage. El Tiple, a rural Afro-Colombian community, has been affected by the incursion of private corporations that promoted the expansion of sugarcane monocrops in their territory. Since the introduction of the monoculture industry, local freshwater sources have been depleted due to intensive water use for irrigation of the sugarcane crops. Additionally, the intensive usage of agrochemicals has been linked with loss of native flora, damages to family farms, and pollution of …

Mate Choice And Sexual Conflict In A Livebearing Fish, Julia C. Kasper

Master's Theses

Eavesdropping occurs when a receiver extracts information from an interaction without directly engaging with the signaler. Eavesdropping has been shown to be an effective way of evaluating the quality of potential mates and their abilities in male-male competition, without having to directly interact with them, thereby reducing energy costs and mating harassment. Girardinus metallicus is a livebearing poeciliid fish endemic to Cuba whose mating system is dominated by mating harassment in the form of sneak copulations, persistent displaying, and male-male aggression. G. metallicus has a male specific polymorphism in both melanin coloration and behavior. Males with melanin coloration are known …

Fructose Induced Khk-C Can Increase Er Stress Independent Of Its Effect On Lipogenesis To Drive Liver Disease In Diet-Induced And Genetic Models Of Nafld, Se-Hyung Park, Robert N. Helsley, Taghreed Fadhul, Jennifer L. S. Willoughby, Leila Noetzli, Ho-Chou Tu, Marie H. Solheim, Shiho Fujisaka, Hui Pan, Jonathan M. Dreyfuss, Joanna Bons, Jacob Rose, Christina D. King, Birgit Schilling, Aldons J. Lusis, Calvin Pan, Manoj Gupta, Rohit N. Kulkarni, Kevin Fitzgerald, Philip A. Kern, Senad Divanovic, C. Ronald Kahn, Samir Softic

Saha Cardiovascular Research Center Faculty Publications

Non-alcoholic fatty liver disease (NAFLD) is a liver manifestation of metabolic syndrome, and is estimated to affect one billion individuals worldwide. An increased intake of a high-fat diet (HFD) and sugar-sweetened beverages are risk-factors for NAFLD development, but how their combined intake promotes progression to a more severe form of liver injury is unknown. Here we show that fructose metabolism via ketohexokinase (KHK) C isoform leads to unresolved endoplasmic reticulum (ER) stress when coupled with a HFD intake. Conversely, a liver-specific knockdown of KHK in mice consuming fructose on a HFD is adequate to improve the NAFLD activity score and …

Functional Analysis Of Two Campoletis Sonorensis Ichnovirus Vinnexins In Drosophila Melanogaster, Peng Zhang

All Dissertations

Campoletis sonorensis Ichnovirus (CsIV) is produced by the ichneumonid parasitoid Campoletis sonorensis (the primary host). Female parasitoid wasps restrictedly replicate viruses in their ovaries and inject them into a larval lepidopteran (secondary host) during oviposition. This symbiotic virus of C. sonorensis is essential for successful parasitization. CsIV is characterized by having a large, segmented double-stranded DNA genome with a large number of genes, many of which are associated with one of five multigene families. The CsIV vinnexin gene family is one of them and has four members, including CsIV-vnxD and CsIV-vnxG. Vinnexins are homologues of insect Innexins, which form gap …

Reactive Oxygen Species And Weak Magnetic Fields: Unraveling The Mechanisms Of Planarian Regeneration And Tissue Growth, Luke James Kinsey

Dissertations

Reactive oxygen species (ROS) play a critical role in basic cellular behaviors such as apoptosis, proliferation, and differentiation. These molecules once thought to be harmful byproducts of metabolism, are also required for many complex and ubiquitous processes like wound healing, development, and regeneration. This study investigates the influence of ROS on planarian regeneration, with a particular focus on ROS dynamics in stem cell-mediated tissue growth. Data reveal that modulation of ROS levels leads to changes in cellular behaviors and tissue growth outcomes. Inhibition of ROS accumulation blocks stem cell proliferation and tissue growth, preventing planarian regeneration, while partial ROS accumulation …

The Future Of Public And Private Plant Breeding According To Plant Scientists, Lexie Burris

Graduate Theses and Dissertations

Plant breeding has been effective in addressing food insecurity by increasing agricultural yields and productivity. Historically, public plant breeding programs have long-term, integrated approaches to plant breeding research, germplasm enhancement, and variety development, but as funding is reduced the future is less certain as to areas of focus. This survey builds off those before it and asks the next logical question, if a divergence between private and public breeding is taking place, what aspects should each sector focus on? The impetus of this study was to ask opinions of plant breeders globally regarding the direction they believe the public and …

Factors Affecting Food Security And Participation In Food Pantries In The U.S., Alexis Jade Skinner

Graduate Theses and Dissertations

Given the rise in food inflation, reduction of SNAP benefits, and the increased demand for food pantry participation, a more holistic understanding of potential barriers to obtaining assistance from non-Federally regulated food pantries is warranted. In May of 2022, 625 surveys were administered to low-income participants in the United States who participated in food collection from a food pantry in the previous month. Those participants were asked to select what information they were asked to provide during their visit, including home address, place of employment, Social Security card, driver’s license, household size, blood test, or others. Some forms of the …

Metabolomic Profile Of The Healthy Eating Index-2015 In The Multiethnic Study Of Atherosclerosis, Meghana D Gadgil, Alexis C Wood, Ibrahim Karaman, Goncalo Graça, Ioanna Tzoulaki, Victor W Zhong, Philip Greenland, Alka M Kanaya, David M Herrington

Children’s Nutrition Research Center Staff Publications

Background: Poor diet quality is a risk factor for type 2 diabetes and cardiovascular disease. However, knowledge of metabolites marking adherence to Dietary Guidelines for Americans (2015 version) are limited.

Objectives: The goal was to determine a pattern of metabolites associated with the Healthy Eating Index (HEI)-2015, which measures adherence to the Dietary Guidelines for Americans.

Methods: The analysis examined 3557 adult men and women from the longitudinal cohort Multiethnic Study of Atherosclerosis (MESA), without known cardiovascular disease and with complete dietary data. Fasting serum specimens and diet and demographic questionnaires were assessed at baseline. Untargeted 1H 1-dimensional nuclei magnetic …

Undisclosed Outcome Switching, Undisclosed Analysis Switching, Inappropriate Rounding, And Selective Reporting Render Paper “Effectiveness Of A Minimally Processed Food-Based Nutritional Counselling Intervention On Weight Gain In Overweight Pregnant Women: A Randomized Controlled Trial” Unreliable, Armando Peña, Mike Gibney, Kevin Hall, Theodore K Kyle, Andrew W Brown, David B Allison

Children’s Nutrition Research Center Staff Publications

No abstract provided.

Determining The Existence And Regulation Of Microlipophagy In Primary Brown And White Adipocytes, Sara C. Arenas De Leon

Biomedical Sciences ETDs

Lipids are one of life’s four main macromolecules and provide essential functions to cells.

The degradation of lipid droplets and mobilization of lipids occurs through lipolysis. Emerging evidence demonstrates evidence of a selective form of autophagy in lipolysis. The process of microlipophagy has only recently been described, and many features of its regulation are still poorly understood. Our recent study showed that inhibiting mammalian target of rapamycin complex 1 (mTORC1) pathway by depletion of Raptor in adipocytes led to an influx of lysosomes and accumulation of lipid droplets within lysosome. Here, we expand on these previous findings. We were able …

Identifying Functional Enhancers For Fibrotic Gene Regulation In Liver Fibrosis, Parnaz Merikhian

Dissertations and Theses (Open Access)

Liver fibrosis is characterized by progressive activation of proliferating and migrating myofibroblasts that lead to accumulation of extracellular matrix (ECM). These myofibroblasts most arise from activated liver-resident hepatic stellate cells (HSCs). There is an increasing number of patients suffering from liver fibrosis in developed countries including the United States, which is anticipated to continue to grow during 2023-2033 period. TGF-β1 is a key cytokine with a significant role in regulating cell differentiation and adhesion in liver fibrosis. TGF-β signaling triggers gene expression changes in HSCs, including that of fibrotic and EMT-related genes, which then functionally promote HSCs activation and fibrogenesis. …

Investigating The Localization Of Foxo4 Transcription Factor In U87mg Glioblastoma Cell Line, Millat Jahan

Theses and Dissertations

FOXO transcription factors perform diverse functions that have effects on significant biological processes like stem cell homeostasis, cell cycle, apoptosis, and cell fate determination. This research focuses on FOXO4 that is differentially localized in U87MG glioblastoma cells where FOXO4 is targeted to the nucleus. This research is aimed at investigating the mechanism and localization of FOXO4 in U87MG cell lines. Using chimeric fusion construct, we have mapped regions within FOXO factors that can determine specific cellular localization patterns. Finding the mechanism behind specific nuclear localization of FOXO4 can produce innovative data to better understand the distinctive subcellular localization patterns in …

Exploring And Testing Wildfire Risk Decision-Making In The Face Of Deep Uncertainty, Bart R. Johnson, Alan A. Ager, Cody Evers, David Hulse, Max Nielsen-Pincus, John P. Bolte

Environmental Science and Management Faculty Publications and Presentations

We integrated a mechanistic wildfire simulation system with an agent-based landscape change model to investigate the feedbacks among climate change, population growth, development, landowner decision-making, vegetative succession, and wildfire. Our goal was to develop an adaptable simulation platform for anticipating risk-mitigation tradeoffs in a fire-prone wildland– urban interface (WUI) facing conditions outside the bounds of experience. We describe how five social and ecological system (SES) submodels interact over time and space to generate highly variable alternative futures even within the same scenario as stochastic elements in simulated wildfire, succession, and landowner decisions create large sets of unique, path-dependent futures for …