Life Sciences Commons^™

The Effects Of Beaver Dam Anaolgs On Linked Aquatic-Terrestrial Communities In Western Headwater Streams, Michelle Elyse Fillion, Benjamin P. Colman, Rachel L. Malison

Graduate Student Theses, Dissertations, & Professional Papers

In response to stream degradation resulting from the near eradication of American Beavers (Castor canadensis), managers of freshwater systems have turned to using beaver dam analogs (BDAs) as one means of restoring waterways from stream and riparian degradation. Though BDAs have been shown to restore physical traits of riparian areas, their influence on macroinvertebrates and linked aquatic-terrestrial systems is not well understood. To examine how BDAs influence aquatic habitats, macroinvertebrate communities, and riparian insectivores, we compared unrestored reference stream segments to BDA-restored segments with 7-14 BDAs in three western Montana headwater streams. We collected physical stream measurements and quantitative samples …

The Blackfeet Nation’S Bison Conservation Herd Management Plan, Brandon Kittson

Graduate Student Theses, Dissertations, & Professional Papers

This document is meant to act as a guide to understanding Bison reintroduction on the Blackfeet reservation and serve as a resource for bison management. This report and plan will: 1) review bison ecology and the history of reintroduction efforts on the reservation; 2) identify potential issues and barriers to successful reintroduction; 3) present a summary of current land policies and patterns of land use on the reservation; and 4) provide recommendations for dealing with those potential issues. Recommendations will be based on analyses of previous knowledge of bison and bison behavior.

Csn-5: A Tumor's Friend Or Foe In The C. Elegans Germline?, Kellie C. Kuch

Graduate Student Theses, Dissertations, & Professional Papers

The COP9 signalosome is a highly conserved eukaryotic complex regulating protein degradation via deneddylation of Cullin-RING E3 ligases. CSN5, the COP9’s fifth component, contains the catalytically active domain for CSN deneddylation. The complex is inactive without CSN5; however, CSN5 engages in COP9-independent binding with several other proteins, typically promoting either destruction or stabilization of its partners. Many of its confirmed interaction partners are also implicated in tumorigenesis (prominent examples being p27 and p53) and a complex cancer interactome has been established for CSN5. Additionally, CSN5 overexpression has been documented in a staggering array of cancers of diverse origins. This discovery …

Habitat Selection And Connectivity Of Mountain Lions (Puma Concolor) Across Anthropogenic Barriers On The Olympic Peninsula: A Multi-Method Comparison, Thomas R. Barbee

Graduate Student Theses, Dissertations, & Professional Papers

Designing and maintaining effective wildlife corridors is an increasingly important conservation challenge in today’s fragmenting landscapes. GPS-based resource selection functions and camera-based occupancy models are both well-established staples of wildlife connectivity analyses and corridor planning, but each have notable trade-offs in cost and data resolution. Wildlife organizations worldwide rely heavily on camera-based occupancy modelling to plan wildlife corridors, especially where resource limitations or ethical concerns prohibit the use of GPS tags. If spatial connectivity maps from occupancy models could be shown to capture the essential elements of animal movement well enough to identify functionally equivalent corridors to those identified in …

A Soil-Plant-Atmosphere Continuum Model To Simulate Seedling Response To Water Stress, Michael Kurt Kendree Jr.

Graduate Student Theses, Dissertations, & Professional Papers

Most current ecohydrologic models simplify the hydraulics that are at play in plant-water relationships by assuming that the water content within the plant is static. In reality, plants have a relative water content that varies with time in response to environmental stresses. To some extent, variations in plant relative water content are regulated by changes in the osmotic potential of water within plant cells, which contributes to the resilience of plants during periods of water shortage. We present a model that simulates plant water transport and storage within the soil-plant-atmosphere continuum. The model incorporates the role of osmotic regulation in …

A Sport Coach's Role In Motivating Athletes, Tarek Farouk

Graduate Student Theses, Dissertations, & Professional Papers

Athlete motivation, sport psychology, and coaching are intricately connected through the purpose of increasing athletic performance, persistence, and overall success. As mentors, sport coaches play an integral role in affecting an athlete’s motivation by tending to their psychological needs to perform optimally. This paper explores how coaches can leverage visualization, verbal encouragement, mental imagery, and goal setting as ways to enhance athlete motivation and improve performance. By integrating these techniques, coaches can create a supportive and motivating environment that fosters both physical and psychological development in athletes. The paper also examines the principles of sport psychology, emphasizing the importance of …

The Hare And The Hawk: Predator, Prey, And Coat Color Mismatch In A Polymorphic Snowshoe Hare Population, Amanda Shuler Emmel

Graduate Student Theses, Dissertations, & Professional Papers

Climate change effects on predator-prey interactions are complex and poorly understood, with few study systems that explicitly connect specific antipredator traits to particular climate drivers. Such a system can be found in seasonal coat color change, whereby 21 species globally molt from a summer brown to a winter white coat to maintain camouflage with seasonal snow. Snowshoe hares (Lepus americanus) contend with increased predation due to climate-change induced coat color mismatch under decreasing snowcover. Through a combination of field experiments in the central Cascade mountains, my thesis investigates snowshoe hare mismatch and predation risk from both a predator …

Regulation Of Er To Golgi Transport By Alg-2 And Peflin In Response To Calcium Signaling, And A Review Of Relevant Genetically-Encoded Fluorescent Tools, Danette M. Kowal Seiler

Graduate Student Theses, Dissertations, & Professional Papers

The endoplasmic reticulum performs multiple functions in the eurkaryotic cell: biomolecule synthesis, protein folding, cargo sorting and secretion, and helping to maintain cellular calcium homeostasis. Though much has been discovered about these processes and the myriad proteins, enzymes, transcription factors, ions and other factors that play their own parts, much is still left to learn. To facilitate continued study of ER-to-Golgi transport, an array of genetically-encoded fluorescent tools are available to researchers. The featured review in Chapter 1 details the history of these tools and highlights some of the newest, which also incorporate information from the fields of synthetic chemistry …

Gaba Transporter Loss-Of-Function Mutations In Pediatric Epilepsy: Neural Mechanisms And A Novel Fatty Acid Based Therapeutic Approach, Alessandra G. Jester

Graduate Student Theses, Dissertations, & Professional Papers

An increasing number of spontaneous mutations in the GABA transporter gene SLC6A1 (GAT-1) have been associated with pediatric epilepsy and neurodevelopmental disorders. The molecular mechanisms and impact of mutations on GABA homeostasis and neuronal circuit function are poorly understood. Furthermore, there are currently no validated therapeutic approaches to treat patients. A de novo mutation (S295L) in the GABA transporter gene SLC6A1 that was identified in a pediatric patient was introduced into a human cDNA construct, and mutant and wild-type transporters were expressed and studied in Xenopus oocytes by voltage clamp and radiolabeled GABA flux measurement. In addition, the effect of …

Understanding Cellular Dynamics: Investigating A Yeast-Two Hybrid Protein-Protein Interaction, Riok3:Cse1l; Also By Investigating Trogocytosis Of Cd4+ T Cells From Rhog-/- Mice, Brittnee N. Crane

Graduate Student Theses, Dissertations, & Professional Papers

Rift Valley fever virus (RVFV) is a negative-sense virus that was first described in 1930 when it was isolated from sheep during an outbreak. In the last 25 years there has been a spread in the geographical range into the Middle East. The most susceptible animals are cattle, goats, sheep, and camels. The most overt symptom of livestock infection is that infected pregnant animals experience spontaneous abortion. Humans are susceptible as well and symptoms range from mild febrile illness to liver necrosis, blindness, hemorrhagic fever, and death. An important player in the cellular innate response to RVFV infections is the …

Repatriation And A Biological Profile Of Indigenous Remains Of West Texas, Haley P. Rebardi

Graduate Student Theses, Dissertations, & Professional Papers

The Native American Graves Protection and Repatriation Act (NAGPRA) was created in response to the injustice, mishandling, looting, and trafficking of Native American remains and cultural artifacts. However, even with the latest amendment in December of 2023, there are still gray areas in the context and language. Notably, an issue with NAGPRA is the act only includes institutions and organizations that receive and are supported by Federal funding. Consequently, the act does not cover private collections. The main concern in these contexts is the lack of communication, awareness, and/or permission with and from descendant tribes or potential descendants when it …

Integrating Western Science And Indigenous Knowledge For Just Practices In Conservation, Cierra Lea Keith

Graduate Student Theses, Dissertations, & Professional Papers

No abstract provided.

Testosterone Administration In Premenopausal Women, Kaeli Nichol Shockley

Graduate Student Theses, Dissertations, & Professional Papers

Testosterone administration is a relatively uncommon practice in the United States. Women are at risk of having health issues that could be remedied by low-dose testosterone administration via transdermal patch or topical cream. This paper explores the potential health and wellness benefits of administering low-dose testosterone to premenopausal women. Low-dose Testosterone may improve depression scores as well as upregulate markers of bone formation in women with anorexia nervosa. Higher testosterone was associated with increased muscle mass and muscular strength in collegiate female athletes. Testosterone given at lower doses increases muscle mass and exercise performance in college-age women. Overall, testosterone supplementation …

Moose Abundance And Calf:Cow Ratios On The Blackfeet Indian Reservation And Glacier National Park, Landon Joel Magee

Graduate Student Theses, Dissertations, & Professional Papers

Many moose (Alces alces; Sikihtsisoo) populations across North America, especially along their southern range, are declining due to factors such as climate change, parasites and disease, predation, habitat loss and degradation, and overharvest. These declines highlight broader ecological concerns, as moose play a critical role as prey within their ecosystems. Despite their importance, data on crucial demographic parameters like abundance and age ratios are sparse for moose, complicating management efforts. Conventional monitoring methods, including radio-collaring, harvest data, public surveys, and aerial surveys, face significant logistical and financial challenges, and often fail to provide a comprehensive understanding of …

Quantifying Wastewater Contributions To The Upper Clark Fork River, Claire Utzman

Graduate Student Theses, Dissertations, & Professional Papers

Though algae are at the base of food webs in many rivers, large algal blooms are increasing in frequency and can cause problems with nutrient cycling, depletion of oxygen supplies at night, and release of toxic chemicals. One leading cause of algal blooms is nutrient loading into rivers, and controlling nutrient release in wastewater is one approach that can help limit algal growth. To reduce the intensity of algal blooms in the Clark Fork River in western Montana, numeric nutrient standards were put in place that regulated the release of the nutrients nitrogen and phosphorus into the river from wastewater. …

Bloom: A Microbial Self-Portrait, Emily Lauren Mulvaney

Graduate Student Theses, Dissertations, & Professional Papers

No abstract provided.

A Tale Of Two Working Landscapes, Sage C. Sutcliffe

Graduate Student Theses, Dissertations, & Professional Papers

No abstract provided.

Movement-Based Interventions To Support Executive Function And Emotional Regulation In Autism Through The Potential Molecular Induction Of Neuroplasticity: A Systematic Review, Julie Dalmolen

Cal Poly Humboldt theses and projects

Autism Spectrum Disorder is associated with cognitive challenges that can hinder Executive Function. Disruptions in ER tend to create the largest barriers to social interactions with peers and can lead to disengagement from social activities and increased isolation which can impede learning and increase sedentary behaviors. Exercise interventions have been extensively studied in the autism population. While research suggests a variety of movement-based practices are effective in supporting metabolism, motor skills, stereotypical behaviors, and executive function, the impacts on emotional regulation are less clear, as are the types of exercise interventions that have the greatest effects. This systematic review aimed …

Bird Predation On Coho Salmon (Oncorhynchus Kisutch) In Humboldt Bay, Colton J. Dixon

Cal Poly Humboldt theses and projects

Coho Salmon (Oncorhynchus kisutch) populations along the west coast of the United States are declining. In Humboldt County, located in northwestern California, Coho Salmon have been in decline since their federal listing as threatened in 1997, primarily due to habitat loss from logging, agriculture, and urban development. Although these anthropogenic factors caused salmon populations to decline, bird predation may also be hindering population recovery, as evidenced by the recovery of Passive Integrated Transponder (PIT) tags, originally implanted in Coho Salmon, from bird colonies in Humboldt Bay. This study examines predation by Double-crested Cormorants (Phalacrocorax auritus), Caspian …

Examining The Drivers Of Nocturnal Behavior Of Pikas At Lower Elevations In Lassen National Forest, California, Evan Burnett

Cal Poly Humboldt theses and projects

The American pika (Ochotona princeps) is a charismatic mammal species adapted to occupy rockslides and boulder fields in western North America. Historically monitored due to their climate sensitivity, pikas have experienced extirpations along their lower range margins—driven by chronic and acute temperature stress—prompting increased concern and monitoring over the risks posed by anthropogenic climate change. Traditionally considered an alpine species, pikas occupy a wide range of elevations, with those at lower elevations exhibiting higher rates of nocturnality than their counterparts at higher elevations. Temperature is hypothesized to be the driver, but this has yet to be confirmed. Pikas …

Microbes: Key Constituent Of Predator Risk Cues?, Jake R. Vargas

Cal Poly Humboldt theses and projects

Chemical cues emanating from predators can play a key role in aquatic predator-prey interactions and food webs. Understanding how prey respond to these risk cues is therefore critical for understanding the direct effects of predators on prey populations and their indirect effects on communities. To respond adaptively, prey must accurately assess the risk of predation associated with perceived chemical cues, an oft-documented phenomenon. However, little is known about how cues disperse, persist, and degrade, all of which could limit the adaptive responses of prey. Using laboratory-based observations of a well-studied predator cue-induced antipredator behavior by the marine gastropod Tegula funebralis …

Fire Severity Mediates Marten And Fisher Occurrence: Impacts Of The Dixie Fire On A Carnivore Community, Christopher James Collier

Cal Poly Humboldt theses and projects

The consumption of an astounding one million acres resulted from California’s largest single fire to date, the 2021 Dixie Fire. The social and economic losses associated with the fire were immediately apparent, but the effects on wildlife remained unknown. While previous research has suggested mixed or low severity fire may be beneficial to certain wildlife species, the responses to megafires are poorly understood for many carnivores. To better understand these responses to severe fire, I used a random sampling design stratified by burn severity to survey in and around the Dixie Fire footprint using baited camera stations. This allowed me …

Longevity Of Prescribed Fire Effectiveness In Mixed-Evergreen Forests Of The Klamath Mountains, Kaily M. Fineran

Cal Poly Humboldt theses and projects

Prescribed fire is a common management tool used across the western United States to create wildfire-resilient ecosystems and communities. The Klamath Mountains of northern California, USA has experienced numerous, large wildfires in recent years. This is due in part to a combination of highly flammable fuels, uncharacteristic weather events, and high fuel accumulations as a result of fire exclusion and forest management practices. Within the last decade, local land management organizations and the Karuk Tribe have begun re-introducing prescribed fire in low elevation, mixed evergreen forests. While the long-term effects of fuel treatments are not well-known, these efforts provided a …

Pond Characteristics That Influence Oviposition Site Selection By Two Pond-Breeding Amphibians, Northern Red-Legged Frog (Rana Aurora) And Northwestern Salamander (Ambystoma Gracile), Jessica Jones

Cal Poly Humboldt theses and projects

Pond-breeding amphibians connect aquatic and terrestrial habitats through their biphasic life cycle, and understanding pond characteristics that support oviposition sites for multiple species is important for amphibian conservation. Two common amphibians in the Pacific Northwest, Northern red-legged frog (Rana aurora) and Northwestern salamander (Ambystoma gracile) often oviposit in the same pond; however, prior studies have focused on pond use by one species or the other, but not both together. I surveyed pond and oviposition site characteristics of 26 ponds in Humboldt County, CA, 10 of which were used only by R. aurora and 16 of which …

Characterizing The Habitat Use Of Pacific Coast Feeding Group Gray Whales (Eschrichtius Robustus) And The Spatial And Temporal Variability Of Their Benthic And Planktonic Invertebrate Prey In Northern California, Robyn E. Norman

Cal Poly Humboldt theses and projects

As opportunistic foragers, the Eastern North Pacific population (~20,000) of gray whales (Eschrichtius robustus) feed on diverse benthic and planktonic invertebrates in northern Alaska foraging grounds before they undertake one of the largest yearly migrations of any mammal to breed in Baja California, Mexico. While most of the population travels to the summer foraging grounds in Alaska, a sub-group of whales (~230) called the Pacific Coast Feeding Group (PCFG) summer between British Columbia, Canada, and northern California. The diet of PCFG whales typically includes high-density and/or high-caloric prey items like mysids and diverse species of amphipods, yet a …

Accelerations And Emg Differences Between Isocaloric High-Incline Walking And Level Grade Jogging, Taj Krieger

Cal Poly Humboldt theses and projects

Purpose: To examine muscle activation and biomechanical differences between high-incline walking (HIW) at 20% grade and level-grade jogging (LGJ) at isocaloric intensity on a treadmill. Methods: Physically inactive men and women between 18-31 completed the study. Participants (n=19) completed two isocaloric exercise trials (HIW and LGJ), each ten minutes in duration. EMG data was obtained from the Bicep Femoris (BF), Gluteus Maximus (GM), Lateral Gastrocnemius (LG), Tibialis Anterior (TA), Vastus Lateralis (VL), Anterior Deltoid (AD), Erector Spinae (ES) and Soleus (SOL). Resultant accelerations on the foot and sacrum were measured by IMU.

Results: When subjects were matched at isocaloric intensities …

Building Detailed And Accurate Whole-Plant Concepts: A Morphometrics-Informed Reconstruction Of A Zosterophyll From The Lower Devonian Of Wyoming, Samar R. El-Abdallah

Cal Poly Humboldt theses and projects

The fragmentary state of plant fossils and the modular organization of plants make whole-plant reconstructions of fossil species desirable and feasible. Such reconstructions are key for integrating fossil species in systematic studies. The ca. 410 Ma Beartooth Butte Formation of Wyoming (USA) hosts the only rich Early Devonian plant assemblages in western North America, which fills a major gap in the phytogeography of this interval. I construct a whole-plant concept for a new zosterophyll from the Beartooth Butte Formation based on a detailed morphometric study. More than 600 fragments of the new zosterophyll were observed and 200 of those were …

Post-Fire Vegetation And Pyrodiversity Influence Breeding Abundances Of Lewis's Woodpeckers In The Eastern Cascades, Oregon, Brittany Welch

Cal Poly Humboldt theses and projects

Lewis’s woodpeckers (Melanerpes lewis) are described as "burn specialists" due to their preference for breeding in recently burned pine forests in the western US. However, despite increasing fire activity, this species experienced a 48% range-wide decline between 1968 and 2019, which raises questions about their adaptability to altered fire regimes in the region. We partnered with the Oregon Department of Fish & Wildlife to investigate how Lewis’s woodpeckers in the eastern Cascades, Oregon were influenced by post-fire habitat characteristics such as snag size, snag density, and burn severity across five wildfires that varied in fire age, size, and …

The Effects Of Native Perennial Cover On Physiological Indicators Of Habitat Quality For Sparrows In California Coastal Prairie Rangelands, Madeleine A. Ybarra

Cal Poly Humboldt theses and projects

Prescribed grazing management can have myriad effects on wildlife, with low to moderate grazing being associated with an increased abundance of some grassland birds. Specifically, Grasshopper Sparrow (Ammodramus savannarum) and Savannah Sparrow (Passerculus sandwichensis) abundance have been shown to be positively associated with both grazing and a higher percentage of native plant cover. However, measures of abundance provide an incomplete assessment of habitat quality for birds. Physiological and morphological measurements can help indicate environmental stress in individual birds, which reveals more information about habitat quality. We measured body condition and heterophil:lymphocyte ratios to gauge avian stress …

A Few Lessons From Venezuela: Introducing A New Path Of Appropriate Farming And Appropriate Renewable Energy, Victor Christianto, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

In development economics literatures, there is a known term for developing countries which tend to mismanage natural resources, that term is called natural resources curse. And two examples which have been discussed quite often is Venezuela and Norway. Here we also discuss other countries as well, including Argentina and a few lessons for Indonesia in choosing the next course of development path, especially with appropriate farming and appropriate renewable energy.