Life Sciences Commons^™

Evaluation Of Treatment Parameters For Focused-Extracorporeal Shock Wave Therapy In Knee Osteoarthritis Patients With Bone Marrow Lesions: A Pilot Study, Hani Al-Abbad, Jacqueline E Reznik, Erik Biros, Bruce Paulik, Rob Will, Penny Moss

Faculty, Staff and Student Publications

OBJECTIVES: To evaluate the effect of different dosage parameters of focused-extracorporeal shock wave therapy on pain and physical function in knee osteoarthritis patients with bone marrow lesions. In addition, to investigate pathophysiological changes based on imaging and biomarker measures.

METHODS: Using a single-case experimental design, a total of 12 participants were randomly allocated in 4 equal groups of 3 to receive different dosages of focused-extracorporeal shock wave therapy. Each group received either 4 or 6 sessions of 1500 or 3000 shocks over 4 or 6 weekly sessions. Participants underwent repeated measurements during the baseline, intervention, and post-intervention phases for Western …

Author Correction: Hypomorphic Brca2 And Rad51c Double Mutant Mice Display Fanconi Anemia, Cancer And Polygenic Replication Stress, Karl-Heinz Tomaszowski, Sunetra Roy, Carolina Guerrero, Poojan Shukla, Caezaan Keshvani, Martina Ott, Jianhua Zhang, Courtney D Dinardo, Detlev Schindler, Katharina Schlacher

Faculty, Staff and Student Publications

No abstract provided.

Incidence And Risk Factors Of Early Onset Vod/Sos Differ In Younger Vs Older Adults After Stem Cell Transplantation, Curtis Marcoux, Rima M Saliba, Whitney Wallis, Sajad Khazal, Dristhi Ragoonanan, Priti Tewari, Betul Oran, Amanda Olson, Qaiser Bashir, Muzaffar Qazilbash, Amin Alousi, Chitra Hosing, Yago Nieto, Gheath Alatrash, David Marin, Katayoun Rezvani, Issa Khouri, Samer Srour, Richard Champlin, Elizabeth Shpall, Partow Kebriaei

Faculty, Staff and Student Publications

Veno-occlusive disease (VOD) is a rare but potentially life-threatening complication after allogeneic hematopoietic stem cell transplantation (allo-SCT). Although increasing awareness and modern transplant techniques have mitigated risk, the interaction of historic risk factors in the current era with posttransplant cyclophosphamide (PTCy) is unknown. We performed a retrospective single-center analysis of adult patients aged ≥18 years undergoing allo-SCT (N = 1561) using predominately PTCy as graft-versus-host disease (GVHD) prophylaxis (72%). We found a higher rate of VOD at 16.8% (20 of 119) in those aged ≤25 years compared with 3.8% (55 of 1442) in those aged >25 years, with unique predictors …

Up-Regulation Of Non-Photochemical Quenching Improves Water Use Efficiency And Reduces Whole-Plant Water Consumption Under Drought In Nicotiana Tabacum, Benjamin Turc, Seema Sahay, Jared Haupt, Talles De Oliveira Santos, Geng Bai, Katarzyna Glowacka

Center for Plant Science Innovation: Faculty Publications

Water supply limitations will likely impose increasing restrictions on future crop production, underlining a need for crops that use less water per mass of yield. Water use efficiency (WUE) therefore becomes a key consideration in developing resilient and productive crops. In this study, we hypothesized that it is possible to improve WUE under drought conditions via modulation of chloroplast signals for stomatal opening by up-regulation of non-photochemical quenching (NPQ). Nicotiana tabacum plants with strong overexpression of the PsbS gene encoding PHOTOSYSTEM II SUBUNIT S, a key protein in NPQ, were grown under differing levels of drought. The PsbS-overexpressing lines lost …

How To Identify Various Sparrow Species, Aidan Castricone '24, Alexis Larsen '24, Emma Barry '25

Biology Student Scholarship

A helpful infographic on how to differentiate between four little brown birds: the house sparrow, the song sparrow, the white-throated sparrow, and the swamp sparrow. Animal behavior (BIO 350/350L) final project

Seven Behaviors Exhibited In The Blue Jay, Gillian Chapleau '24, Jide Owoeye '23

Biology Student Scholarship

A quick guide to understanding common behaviors exhibited by blue jays. Animal behavior (BIO 350/350L) final project

Blue Jays, Meriam Salo '25, Gabriela Guzman Reyes '24

Biology Student Scholarship

A guide to identifying blue jays, and understanding their common behaviors. Animal behavior (BIO 350/350L) final project

High Tunnel Bell Pepper Spacing Trial, Bronwyn Aly

Midwest Vegetable Trial Reports

The objective of this trial is to determine an optimum spacing for bell peppers grown in a high tunnel production system. Six different spacing treatments were evaluated in this trial. Results from this study suggest that tighter plant spacing increased yield per unit area (100 feet of linear row) but decreased the yield per plant.

Mallards And Their Interesting Facts, Caitlin Mchugh '24, Jessica Slaton '24

Biology Student Scholarship

A guide on how to differentiate between male and female mallards, where to find these ducks, and their common behaviors. Animal behavior (BIO 350/350L) final project

Identifying The American Goldfinch, Margaret Low '24, Laura Mooney '24

Biology Student Scholarship

An infographic with tips on how to identify a common backyard visitor, the American goldfinch. Animal behavior (BIO 350/350L) final project

03.11.2024 Orsp Connect, Liz Williamson

ORED Newsletter

PAPPG Updates, J. R. Love, William Magee Institute grant

Mir-200c Reprograms Fibroblasts To Recapitulate The Phenotype Of Cafs In Breast Cancer Progression, Zhao Lin, Megan Roche, Víctor Díaz-Barros, Marina Domingo-Vidal, Diana Menezes, Madalina Tuluc, Guldeep Uppal, Jaime Caro, Joseph Curry, Ubaldo Martinez-Outshoorn

Kimmel Cancer Center Faculty Papers

Mesenchymal-epithelial plasticity driving cancer progression in cancer-associated fibroblasts (CAFs) is undetermined. This work identifies a subgroup of CAFs in human breast cancer exhibiting mesenchymal-to-epithelial transition (MET) or epithelial-like profile with high miR-200c expression. MiR-200c overexpression in fibroblasts is sufficient to drive breast cancer aggressiveness. Oxidative stress in the tumor microenvironment induces miR-200c by DNA demethylation. Proteomics, RNA-seq and functional analyses reveal that miR-200c is a novel positive regulator of NFκB-HIF signaling via COMMD1 downregulation and stimulates pro-tumorigenic inflammation and glycolysis. Reprogramming fibroblasts toward MET via miR-200c reduces stemness and induces a senescent phenotype. This pro-tumorigenic profile in CAFs fosters carcinoma …

Role Of Glia In Diurnal Rhythms In Neuroinflammation And Blood-Brain Barrier Breakdown, Jennifer Hoi-Ping Lawrence

Arts & Sciences Graduate Student Theses and Dissertations

While inflammation is an important mechanism for the return to homeostasis post insult or injury, inflammation in the central nervous system (CNS) can lead to irreparable damage. To mitigate this process, the brain is protected from circulating neurotoxic molecules as well as peripheral immune cells through the tightly regulated blood-brain barrier (BBB). The balance between pro- and anti- inflammation in the CNS rapidly shifts towards a neurotoxic proinflammatory state during acute bacterial or viral infections or chronic neuroinflammatory diseases. Excessive inflammatory responses are also coupled with extensive BBB leakage and breakdown, allowing rampant entry of peripheral inflammatory cells and mediators …

Urban-Rural Differences In School Districts' Local Wellness Policies And Policy Implementation Environments, Rebecca A Seguin-Fowler

Faculty, Staff and Student Publications

Higher rates of obesity in rural compared to urban districts suggest environmental differences that affect student health. This study examined urban-rural differences in districts' local wellness policies (LWPs) and LWP implementation environments. Cross-sectional data from two assessments in Texas were analyzed. In assessment one, each district's LWP was reviewed to see if 16 goals were included. In assessment two, an audit was conducted to identify the presence of a wellness plan (a document with recommendations for implementing LWPs), triennial LWP assessment, and school health advisory councils (SHACs) on the district website. Rural districts' LWPs had a smaller number of total …

Association Of Habitual Intake Of Probiotic Supplements And Yogurt With Characteristics Of The Gut Microbiome In The Multiethnic Cohort Adiposity Phenotype Study, Weiwen Chai, Gertraud Maskarinec, Unhee Lim, Carol J. Boushey, Lynne R. Wilkens, V. Wendy Setiawan, Loïc Le Marchand, Timothy W. Randolph, Isaac C. Jenkins, Johanna W. Lampe, Meredith A.J. Hullar

Department of Nutrition and Health Sciences: Faculty Publications

Consumption of probiotics and/or yogurt could be a solution for restoring the balance of the gut microbiota. This study examined associations of regular intake of probiotic supplements or yogurt with the gut microbiota among a diverse population of older adults (N=1,861; 60–72 years). Fecal microbial composition was obtained from 16S rRNA gene sequencing (V1-V3 region). General Linear Models were used to estimate the associations of probiotic supplement or yogurt intake with microbiome measures adjusting for covariates. Compared to non-yogurt consumers (N=1,023), regular yogurt consumers (≥once/week, N=818) had greater Streptococcus (β=0.29, P=0.0003) and lower Odoribacter (β=−0.33, P<0.0001) abundance. The directions of the above associations were consistent across the five ethnic groups but stronger among Japanese Americans (Streptococcus: β=0.56, P=0.0009; Odoribacter: …

Ape-Gen20: Expanding Rapid Class I Peptide-Major Histocompatibility Complex Modeling To Post-Translational Modifications And Noncanonical Peptide Geometries, Romanos Fasoulis, Mauricio M Rigo, Gregory Lizée, Dinler A Antunes, Lydia E Kavraki

Faculty, Staff and Student Publications

The recognition of peptides bound to class I major histocompatibility complex (MHC-I) receptors by T-cell receptors (TCRs) is a determinant of triggering the adaptive immune response. While the exact molecular features that drive the TCR recognition are still unknown, studies have suggested that the geometry of the joint peptide–MHC (pMHC) structure plays an important role. As such, there is a definite need for methods and tools that accurately predict the structure of the peptide bound to the MHC-I receptor. In the past few years, many pMHC structural modeling tools have emerged that provide high-quality modeled structures in the general case. …

Immune Heterogeneity In Small-Cell Lung Cancer And Vulnerability To Immune Checkpoint Blockade, Barzin Y Nabet, Habib Hamidi, Myung Chang Lee, Romain Banchereau, Stefanie Morris, Velimir Gayevskiy, Minu K Srivastava, Namrata S Patil, Kiandra A Smith, Rajiv Jesudason, Caleb Chan, Patrick S Chang, Matthew Fernandez, Sandra Rost, Lisa M Mcginnis, Hartmut Koeppen, Carl M Gay, John D Minna, John V Heymach, Joseph M Chan, Charles M Rudin, Lauren A Byers, Stephen V Liu, Martin Reck, David S Shames

Faculty, Staff and Student Publications

Atezolizumab (anti-PD-L1), combined with carboplatin and etoposide (CE), is now a standard of care for extensive-stage small-cell lung cancer (ES-SCLC). A clearer understanding of therapeutically relevant SCLC subsets could identify rational combination strategies and improve outcomes. We conduct transcriptomic analyses and non-negative matrix factorization on 271 pre-treatment patient tumor samples from IMpower133 and identify four subsets with general concordance to previously reported SCLC subtypes (SCLC-A, -N, -P, and -I). Deeper investigation into the immune heterogeneity uncovers two subsets with differing neuroendocrine (NE) versus non-neuroendocrine (non-NE) phenotypes, demonstrating immune cell infiltration hallmarks. The NE tumors with low tumor-associated macrophage (TAM) but …

Nanofibrous Multidomain Peptide Hydrogels Provide T Cells A 3d, Cytocompatible Environment For Cell Expansion And Antigen-Specific Killing, Viridiana Leyva-Aranda, Shailbala Singh, Maria J Telesforo, Simon Young, Cassian Yee

Faculty, Staff and Student Publications

T cells have the ability to recognize and kill specific target cells, giving therapies based on their potential for treating infection, diabetes, cancer, and other diseases. However, the advancement of T cell-based treatments has been hindered by difficulties in their ex vivo activation and expansion, the number of cells required for sustained in vivo levels, and preferential localization following systemic delivery. Biomaterials may help to overcome many of these challenges by providing a combined means of proliferation, antigen presentation, and cell localization upon delivery. In this work, we studied self-assembling Multidomain Peptides (MDPs) as scaffolds for T cell culture, activation, …

Toward Generalizable Machine Learning Models In Speech, Language, And Hearing Sciences: Estimating Sample Size And Reducing Overfitting, Hamzeh Ghasemzadeh, Robert E Hillman, Daryush D Mehta

Faculty, Staff and Student Publications

PURPOSE: Many studies using machine learning (ML) in speech, language, and hearing sciences rely upon cross-validations with single data splitting. This study's first purpose is to provide quantitative evidence that would incentivize researchers to instead use the more robust data splitting method of nested

METHOD: First, the significant impact of different cross-validations on ML outcomes was demonstrated using real-world clinical data. Then, Monte Carlo simulations were used to quantify the interactions among the employed cross-validation method, the discriminative power of features, the dimensionality of the feature space, the dimensionality of the model, and the sample size. Four different cross-validation methods …

Automating Data Analysis For Hydrogen/Deuterium Exchange Mass Spectrometry Using Data-Independent Acquisition Methodology, Frantisek Filandr, Vladimir Sarpe, Shaunak Raval, D Alex Crowder, Morgan F Khan, Stephen Coales, Aleem Syed, John A Tainer, Susan P Lees-Miller, David C Schriemer

Faculty, Staff and Student Publications

We present a hydrogen/deuterium exchange workflow coupled to tandem mass spectrometry (HX-MS2) that supports the acquisition of peptide fragment ions alongside their peptide precursors. The approach enables true auto-curation of HX data by mining a rich set of deuterated fragments, generated by collisional-induced dissociation (CID), to simultaneously confirm the peptide ID and authenticate MS1-based deuteration calculations. The high redundancy provided by the fragments supports a confidence assessment of deuterium calculations using a combinatorial strategy. The approach requires data-independent acquisition (DIA) methods that are available on most MS platforms, making the switch to HX-MS2 straightforward. Importantly, we find that HX-DIA enables …

The Psychology Of Crimes Of Terrorism, Mohamed Ezzat Mostafa Sallam

The World Research of Political Science Journal

Recently, countering the crimes related to terrorism has grown to be of great concern in several countries. The combat of terrorism is a strategic goal in order to maintain national security, especially with reference to the economic, social, and political ramifications encountered whilst doing so. Such criminal behavior may extend beyond the borders of one country, targeting the human right to safely live anywhere. Based on the fact that every human behavior has its motives and ends, the criminal behavior behind the crimes related to terrorism has its motives and ends as well. This highlights the significance of the study …

Financial And Administrative Corruption And Its Political And Economic Effects On The State Of Algeria From 2010 To 2020, Omnia Khaled Elyas Morsi

The World Research of Political Science Journal

This study aimed to shed light on the phenomenon of financial and administrative corruption in its various forms. The study also analyzed the impact of financial and administrative corruption on political and economic stability within the State of Algeria during the time period (2010/2020). It also sought to answer the problem of the study, which was represented in the following question. To what extent did administrative and financial corruption contribute to destabilizing political and economic stability and obstructing the development process within the Algerian state? The analytical approach to analyzing and measuring some indicators affiliated with the World Bank and …

Ecological And Educational Impacts Of A Living Shoreline On St. Simons Island, Georgia, Usa, C. Tate Holbrook, Cameron Atkinson, Jordan Fountain, Stephanie Knox, Jan Mackinnon

Georgia Journal of Science

Living shorelines encompass a range of nature-based alternatives to traditional coastal armoring structures. In addition to shoreline stabilization and protection, living shorelines are intended to meet conservation goals such as restoring habitat, delivering ecosystem services, and promoting ecological resilience to climate change. While early results have been promising, further monitoring is needed to better understand and evaluate the performance of living shorelines across a range of designs and environmental contexts, thereby informing coastal management. Nature-based shoreline protection is relatively new in Georgia, USA, where in 2015 the state’s fourth living shoreline was constructed of oyster shell and native plants on …

Interior Least Terns (Sternula Antillarum Athalassos) In A Landscape Of Fear: Explaining Predator Frequency On Sandbars Using Habitat Features, Carice N. Kimbrell

ATU Theses and Dissertations 2021 - Present

Causes of colony failure in interior least terns (Sternula antillarum athalassos) have been a prevalent topic for researchers investigating this previously endangered species. In Arkansas, these colonies are primarily located on sandbars formed along the McClellan-Kerr Arkansas River Navigation System. Reduction in nesting site quality may put this sensitive species at a greater risk for predator encounters. In my first chapter, I identified which sandbar characteristics resulted in higher frequencies of predator encounters at interior least tern colonies. In my second chapter, I investigated how those predators influenced colony production and whether interior least tern colonies exhibited similar …

Assessing The Performance Of Jatropha Curcas And Moringa Oleifera Conditioners Towards Improving Fecal Sludge Treatment For Agricultural Purpose, Doglas Benjamin1

Tanzania Journal of Engineering and Technology (TJET)

been proposed as alternative solutions to replace chemical conditioners for fecal sludge (FS) treatment. However, their effectiveness in treating FS for safe agricultural use has not been thoroughly evaluated. The aim of this study was to assess the suitability of FS treated with Moringa oleifera and Jatropha Curcas conditioners for agricultural use. Physicochemical parameters Indexes, salinity and sodium hazard levels (Wilcox Diagram analysis), and removal efficiency of nutrients and pathogens were evaluated. Qualitative experiments were conducted using dewatering treatment chambers containing untreated control FS samples, FS treated with Moringa oleifera and Jatropha Curcas conditioners at the University of Dar es …

Drought Legacy Interacts With Wildfire To Alter Soil Microbial Communities In A Mediterranean Climate-Type Forest, Anna J. M. Hopkins, Aaron J. Brace, Jess L. Bruce, J. Hyde, J. B. Fontaine, L. Walden, W. Veber, K. X. Ruthrof

Research outputs 2022 to 2026

Mediterranean forest ecosystems will be increasingly affected by hotter drought and more frequent and severe wildfire events in the future. However, little is known about the longer-term responses of these forests to multiple disturbances and the forests' capacity to maintain ecosystem function. This is particularly so for below-ground organisms, which have received less attention than those above-ground, despite their essential contributions to forest function. We investigated rhizosphere microbial communities in a resprouting Eucalyptus marginata forest, southwestern Australia, that had experienced a severe wildfire four years previously, and a hotter drought eight years previously. Our aim was to understand how microbial …

Effect Of Initial Crack Length, Cross-Head Speed, And Quenching On The Fracture Toughness Of Hdpe With And Without Uv Stabilizers, A. Koriem, R. Singer, A. M. Ollick, M. Elhadary

Mansoura Engineering Journal

In materials science and engineering, understanding the fracture toughness of polymers is essential for ensuring the reliability and safety of various applications. This paper delves into the properties of high-density polyethylene (HDPE), a widely utilized polymer known for its versatility and durability. Fracture toughness, denoting a material's resistance to crack propagation, serves as a critical parameter in assessing the structural integrity of HDPE. The investigation focuses on unraveling the intricate interplay of factors influencing fracture toughness, with particular emphasis on crosshead speed, initial crack length, and the transformative effects of quenching. By exploring the relationships between these variables, our study …

A Meta-Analysis Of Randomized Controlled Trials On The Effects Of Photobiomodulation Therapy On Running Performance, Ana Paula Do Nascimento, Adriano Valmozino Da Silva, Juliano Casonatto, Andreo Fernando Aguiar

International Journal of Exercise Science

International Journal of Exercise Science 17(4): 327-342, 2024. Objective: To conduct a meta-analysis to investigate the effects of Photobiomodulation (PBM) therapy on running performance. Introduction: PBM has recently been advocated as a valuable non-pharmacological ergogenic strategy, however, the efficacy of PBM on running performance remains unproven. Methods: A computerized literature search was conducted until June 2023. The databases searched were PubMed/Medline, Embase, Scopus, SPORTDiscus, and Web of Science. Inclusion/exclusion criteria were determined through the PICO process. The running variables analyzed were time-trial or time-to-exhaustion. Results were combined with the standardized mean differences (SMD) and the 95% confidence intervals. Results: Twelve …

Effects Of Different Physical Therapy Interventions In Improving Flexibility In University Students With Hamstring Tightness- A Systematic Review And Network Meta-Analysis, Esther Liyanage, Kt Malwanage, Mkid Senarath, Hm Wijayasinghe, Indrajith Liyanage, Fmd Chellapillai, Shiromi Nishshanka

International Journal of Exercise Science

International Journal of Exercise Science 17(3): 359-381 2024. The aim of the present study was to identify the different interventions for hamstring flexibility among university students with hamstring tightness and to determine the better treatment method. Design: Systematic review and network meta-analysis. An electronic search of the databases: Medline, Pubmed, Cochrane, EMBASE, CINAHL, Physiotherapy Evidence Database (PEDro) was conducted. A total of 11 articles were included in the review. Of these articles, 02 were case-control studies, 02 were interventional pre-post studies and 07 were RCTs. The 07 RCTs were included for network meta-analysis. The findings of the initial network meta-analysis …

Acute Effects Of A Hop-Stabilization Warm-Up Program On Dynamic Balance, Ground Reaction Force, And Muscle Activity During Cutting Movements In Collegiate Athletes With Chronic Ankle Instability, Teerapat Laddawong, Hiromi Saito, Toshiaki Soga, Hirose Norikazu

International Journal of Exercise Science

International Journal of Exercise Science 17(1): 343-358, 2024. First-time lateral ankle sprains often lead to chronic ankle instability (CAI), with 47% facing recurrent injuries, emphasizing the need for preventive measures. Side-cutting movements in sports pose a risk for CAI individuals due to potential biomechanical control alterations. While the hop-stabilization warm-up program has proven effective in preventing ankle sprains, its specific acute impact on CAI individuals lacks substantial evidence. This study employed a crossover design with eight CAI participants (23 ± 3.4 years, BMI 23 ± 1.5 kg/m²) and eight healthy participants (25 ± 3.6 years, BMI 23 ± …