Life Sciences Commons^™

Investigating Effects Of Co-Culturing With Vibrio Fischeri On Secondary Metabolite Production Of Hawaiian Bobtail Squid Symbionts, Mariam A. Zedan

Honors Scholar Theses

Microbes are a fruitful source of natural product drug discovery since many of their secondary metabolites show defensive activity and have unique structures. However, extracting and elucidating the structure of those compounds can be challenging in vitro due to particular environmental and nutritional requirements of some bacteria. Those requirements may include proximity to other organisms that the microbes have symbiotic relationships with. Under those conditions, the organism may activate silent biosynthetic gene clusters (BGCs) responsible for production of certain secondary metabolites not typically expressed otherwise. One method of BGC induction is co-culturing with other microbes since this mimics the natural …

The Influence Of Researcher Disturbance On Raccoon Predation Of American Alligator Nests, Clarissa Tuten

Electronic Theses and Dissertations

Raccoons (Procyon lotor) are a dominant predator of American alligator (Alligator mississippiensis) nests in the southeastern United States, using a combination of olfactory, visual, and tactile cues to identify nest locations. Studies on alligator nesting ecology typically require researchers to create paths through marsh habitat, potentially introducing visual and olfactory cues raccoons may use to locate nests. The purpose of this study was to evaluate the effect of human visitation to alligator nests on the frequency of raccoon nest predation at two sites in coastal South Carolina, Tom Yawkey Wildlife Center (TYWC) and Santee Coastal Reserve (SCR). We hypothesized that …

Public Horticulture: Process And Design Of The Lincoln Botanical Garden, Brad Kindler

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Beginning in 2012, the local non-profit, The Lincoln Botanical Garden, began organizing the conceptual design and creation of a glass conservatory within a botanical garden in Lincoln, Nebraska. These proposed urban enhancements seek to fill a gap in garden amenities in the city by providing year-round access to public horticulture programming and education.

This project, Public Horticulture: Process and Design of the Lincoln Botanical Garden, documents these efforts and makes design recommendations for a themed Glacial Erratic Garden that could be constructed within the botanical garden.

Advisors: Ellen Paparozzi and Sam Wortman

Stories Of Motivation And Values Of Small-Scale Farmers In Jamaica And The United States, Raquel Taylor

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Small-scale farmers add to global and local food systems through various means such as connecting communities to local food and support economies. Small-scale farms can address issues related to food and nutritional security. However, farming can be a challenging career to engage in, especially for those who are small-scale farmers. Matters related to succession, higher paying off-farm employment, policies, and more can make it challenging to engage in farming. Leaving the question of what would motivate someone to engage in small-scale farming. Motivation can be viewed through multiple lenses; this study chose to use self-determination theory to understand the motivations …

Impact Of Plant Defenses And Aphid-Associated Microbes In Modulating Sorghum–Sugarcane Aphid Interactions, Edith Ikuze

Department of Entomology: Dissertations, Theses, and Student Research

Sorghum (Sorghum bicolor) is a vital cereal crop globally, facing challenges from invasive pests such as the sugarcane aphid (SCA; Melanaphis sacchari). To elucidate mechanisms of sorghum resistance to SCA, we examined the role of plant defenses and the influence of aphid-associated microbes in modulating sorghum defenses. Lignin is a complex heterogenous polymer present in nearly all plant cell walls that plays a critical role in protecting plants from various stresses. In this study, we investigated the role of the caffeoyl coenzyme-A O-methyltransferase (CCoAOMT), one of the core enzymes in monolignol biosynthesis pathway that leads to lignin …

Vibratory Noise Impacts The Sensory Ecology Of A Funnel-Weaving Spider, Brandi June Pessman

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Animals experience their world through diverse sensory systems, leveraging information from prey, predators, and potential mates to inform behavioral decisions. Environmental noise disrupts information via spectral or amplitude masking, degradation, or distortion, potentially leading to costly errors in responses. Critically, urbanization has accelerated the proliferation of novel noise sources, triggering significant shifts in communication, foraging, and predator-prey dynamics among urban wildlife. While vertebrate studies have illuminated urban animals’ flexibility to anthropogenic acoustic noise, a comprehensive understanding requires broader investigations across diverse animal taxa and sensory modalities. To address these gaps, my dissertation explored the impacts of anthropogenic substrate-borne (vibratory) noise …

Genome-Scale Metabolic Modeling Of Chitin-Degrading Microbial Systems, Aimee Kristin Kessell

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

As a major component of fungal cell walls and exoskeletons of invertebrates, chitin is widespread in soils, constituting the second most abundant biopolymer in nature. Composed of N-acetyl-D-glucosamine chains, it serves as a vital source of nutrients, including both carbon and nitrogen, for the growth of microorganisms. A solid understanding of the microbial degradation of chitin is critical for predicting their impacts on biogeochemical cycling in soil ecosystems. Organisms that degrade biopolymers (degraders) produce energetically expensive extracellular enzymes to break down complex organic carbons into simpler labile forms that are sharable with other species, including those that do not contribute …

Analyzing Phototaxis And Related Visual Behaviors Among Diverse Species Of Drosophila, Madeline M. Hill

Honors Program: Senior Projects (Public)

Phototaxis and related visual behaviors can vary between species, and thus members of the genus Drosophila make an excellent study system to examine the evolution of vision. While some existing research points to these phototactic behaviors arising due to mating requirements or due to their species-specific ecology or environmental factors, there exists a lack of understanding as to why striking behavioral differences can exist between closely related species, or between members belonging to the same genus. The present research seeks to uncover the specifics regarding these discrepancies in visual evolution and aims to provide a foundation of knowledge about visual …

Sarcopenia And The Importance Of Resistance Training And Protein-Rich Diets For Prevention Of Muscle Loss In Older Adults: A Literature Review And Informational Pamphlet, Madison Steele

Honors Program: Senior Projects (Public)

The growing prevalence of sarcopenia among older adults as well as youths has prompted further research aimed at developing effective preventative measures and treatment plans. Sarcopenia is often thought to occur solely due to aging, but several other factors contribute to progressive muscle loss. Previous research studies have found an effect of physical activity and dietary protein levels on the risk of developing sarcopenia as well as its onset age. This study aims to review existing knowledge in the field to compile an extensive list of sarcopenia causes and methods of prevention. The main causes identified in this review are …

Proposing Urban Agroforestry Designs For Lincoln, Nebraska: A Model From Berlin, Germany, Noah Johnson

Honors Program: Senior Projects (Public)

Given the threat of a worsening climate crisis, there is a strong need for community and ecosystem resilience. Diverse urban agroforestry systems have the potential to accomplish both and meet many of the objectives outlined in the city of Lincoln, Nebraska’s climate action plan. Additionally, Berlin, Germany could provide an effective model for Lincoln in this regard given the city’s extensive history of established urban agroforestry systems. The objective of this study then is to develop a design for an urban agroforestry site modeled on Berlin’s allotment gardens and tailored to Lincoln’s needs. The methods for creating this design included …

Determining The Impacts Of Corn Silage Mixing Ratios On Hydrogen Production From Beef Cattle Manure, Katya Faber-Quimby

Honors Program: Senior Projects (Public)

With global warming becoming an increasingly serious threat and a growing population requiring additional energy resources, interest in the production of clean energy from the agricultural sector has surged in popularity. Biohydrogen, also known as green hydrogen, is H₂ that has been produced using renewable energy, such as from agricultural byproducts or waste materials. It presents a promising alternative to nonrenewable resources due to its high potential for energy storage and lack of carbon emissions when used. Cattle manure has been explored as a resource for the production of biohydrogen. Selecting for hydrogen-producing microbes in the manure serves the …

What's In A Name? Plant Naming As Cultural Artifact And Story In The Midwestern United States, Sophie Wesseler

Undergraduate Theses

This project sought to collect and contextualize the historical and contemporary names given to plants by inhabitants of the Midwestern United States, understanding plant names as cultural artifacts that can offer insight into the communities in which they were created and evolved. Formatted as a series of entries, this collection gathered these names and contextualized them within other artifacts of cultural significance, such as art or poetry, and alongside historical research on their origins and cultural environments. Examining plant names through the fields of linguistics, semiology, anthropology, cultural studies, taxonomy, and ethnobotany, this work traces the names of various plants …

How New Communication Behaviors Evolve: Androgens As Modifiers Of Neuromotor Structure And Function In Foot-Flagging Frogs, Lisa A. Mangiamele, Allex Andrya Dawn, Kerry M. Lecure, Gina E. Mantica, Riccardo Racicot, Matthew J. Fuxjager, Doris Preininger

Biological Sciences: Faculty Publications

How diverse animal communication signals have arisen is a question that has fascinated many. Xenopus frogs have been a model system used for three decades to reveal insights into the neuroendocrine mechanisms and evolution of vocal diversity. Due to the ease of studying central nervous system control of the laryngeal muscles in vitro, Xenopus has helped us understand how variation in vocal communication signals between sexes and between species is produced at the molecular, cellular, and systems levels. Yet, it is becoming easier to make similar advances in non-model organisms. In this paper, we summarize our research on a group …

Assessing The Role Of Stim1 And Stim2 In Microglial Response To Spinal Cord Injury., Sarayu Alli

College of Arts & Sciences Senior Theses

Microglia, immune cells of the central nervous system, constantly survey their environment for damage. Once damage is detected, they are activated into become reactive, resulting in morphological changes, such as larger cell bodies, and functional changes, such as releasing inflammatory mediators. The switch from surveying to reactive occurs because the microglia received signals that sense danger in the environment. The release of Ca2+ from intracellular stores is involved in store-operated calcium entry (SOCE), a signaling pathway. Recent studies have shown that calcium release from the intracellular stores is a factor of microglial activation. SOCE is specific to monitoring low calcium …

The Determination Of Macrophage Localization In Muscle Injuries Using Spatial Transcriptomics, Julliana Renales

Biomedical Engineering Undergraduate Honors Theses

The repair of traumatic muscle injury is often a long process which can in many cases be insufficient and incomplete. In such cases, scar tissue may form, leading to high risk of re-injury and the prevention of muscle regeneration. An important part of decreasing this risk is gaining a better understanding of the cellular complexities of injury repair. More specifically, macrophage cells are an important piece in the regulation of inflammation and repair. In this project, computational analysis spatial transcriptomic data was performed to examine mouse muscle injury and its development over time. This analysis was used to examine the …

Do Heat Waves Drive Natural Selection In Damselflies?, Adam Baranyk

Biological Sciences Undergraduate Honors Theses

Climate change has led to changes in both mean temperatures and temperature extremes over the recent years. These changes have had differential effects on animals throughout the world. Ectotherms depend on their external environment for thermal regulation, making them especially susceptible to temperature extremes. It is not yet clear whether there is a relationship between physical traits in ectotherms, and survivorship throughout a heat wave. That is, whether or not temperature extremes driven survival selection. In this study, a heat wave was simulated artificially using thermally regulated mesocosms at different temperatures (18°C, 22° C, 26° C, 30° C) with a …

Clonal Plants' Traits And Responses Following Fire Disturbance In Ponderosa Pine Ecosystems In The Colorado Front Range, Raymond Erskine

Master's Theses

Mountain ecosystems are currently experiencing increasing impacts of disturbances (e.g., wildfire) due to global changes in climate and land use, leading to significant changes in vegetation composition and landscape dynamics. Clonal plants, characterized by their vegetative reproduction strategies, offer a range of ecologically important traits to cope with disturbances. However, clonality is often excluded in studies of post-fire vegetation dynamics in mountain ecosystems, and our knowledge of the ability of clonal plants to respond to differing disturbance regimes is limited. Therefore, I examined the response of understory vegetation following fire disturbance in burned and unburned ponderosa pine stands of the …

Simvastatin Induces Autophaghy-Mediated Cell Death In Metastatic Breast Cancer Cells, Jessica Allagoa

Theses (2016-Present)

Breast cancer remains one of the leading causes of cancer deaths among women. Due to the limited effectiveness of current anticancer drugs, ongoing research has extended towards alternative drug categories for potential treatments. Recent findings indicate that statins possess the ability to suppress tumors across various cell types. Traditionally, statins are known as a class of cholesterol-lowering agents and function by inhibiting 3-hydroxy-3-methyl-glutaryl-coenzyme A reductase, a key enzyme in the mevalonate pathway. However, statins can also suppress cell proliferation and ultimately lead to cell death, which includes Type I apoptosis-induced cell death or Type II autophagy-induced cell death. Autophagy is …

Foxo1 Inhibitor, As1842856, Induces Cell Cycle Arrest And Reverses Anticancer Drug-Induced Cytotoxicity In Osteosarcoma Cells, Antanay Hall

Theses (2016-Present)

Forkhead box class O (FOXO)-1 transcription factor controls cell proliferation, apoptosis, oxidative stress, and other cellular activities; FOXO1 has also been implicated in cell cycle regulation. This research project aims to determine the contribution of FOXO1 to cell cycle regulation and response to anticancer drug treatment in osteosarcoma. Osteosarcoma is the most common bone cancer, with most cases occurring in people younger than 30 years old. The study explores the impact of FOXO1 inhibitor AS1842856 on the cytotoxic effects of anticancer drugs in CCHOSD, Hos, and LM7 osteosarcoma (OGS) cell lines. Following chemical inhibition of FOXO1 and anticancer drug treatment, …

Inhibition Of Foxo Induces Oxidative Stress In Osteosarcoma, Kai K. Brown

Theses (2016-Present)

Redox homeostasis is a balance between reactive oxygen species (ROS) generation and neutralization by antioxidants. Oxidative stress (OS) results when the generation of ROS exceeds the neutralizing capacity of endogenous antioxidants. Reactive oxygen species are generated during cellular processes such as mitochondrial activity or metabolism of drugs. Expression of endogenous antioxidants is driven by redox-sensitive transcription factors; therefore, redox-sensitive transcription factors are essential for the maintenance of cellular redox homeostasis. There are several redox-sensitive transcription factors that contribute to the expression of endogenous antioxidants. These redox-sensitive transcription factors include nuclear factor erythroid 2-related factors (Nrf-2), hypoxia-inducible factor (HIF), activator protein-1 …

Investigating The Role Of Mybl1 Gene Variants In Triple Negative Breast Cancer Cells, Ayah Alnakhalah

Theses (2016-Present)

Several years ago our laboratory identified the MYBL1 gene as over-expressed in a subset of triple negative breast cancer cells. Since then we have applied a number of different approaches in an attempt to better define the presence of the gene in these cancers. There is clear and convincing evidence both by other investigators and from experimental observations in our laboratory that alternate splice sequences of a gene can code for variants with different biological roles. We are considering such a duality for the MYBL1 gene in breast samples. The first step towards these studies requires careful analyses of the …

Experimental Analysis Of Mybl1, Vcpip1 And Ubxn2b In Triple Negative Breast Cancers, Fawaz Opeyemi Ibikunle

Theses (2016-Present)

The focus of our laboratory is to characterize triple negative breast cancers. In a previous study we identified six genes over-expressed in a subset of the cancers. MYBL1 was one of the genes. MYBL1 is a strong transcriptional activator responsible for regulation of genes associated with cell cycle signaling, differentiation and apoptosis, all processes that drive cancers. Because of MYBL1’s involvement in processes key to cancer pathogenesis, in an earlier study, we knocked down the MYBL1 gene in efforts to identify genes that were either directly or indirectly associating with the gene to affect the triple negative breast cancer processes. …

Biosorption Of Lithium Using Microbes, Adebola Daisy Olade

Theses (2016-Present)

Lithium (Li) is a very valuable metal that is used across several industries including ceramics, glass, batteries, pharmaceuticals, and polymers. However, in recent years, the global demand for Li and its market price have increased considerably, due to its application as a critical component in the production of rechargeable Li-ion batteries and energy storage systems that are used in electric vehicles and a variety of electronic devices. Although Li occurs as a mineral in hard rocks and salt brines, substantial amounts are found in our environment as part of industrial wastes and oil-field wastewaters. Despite its importance, Li is also …

Impact Of Water Combined Wet Ball Milling Extraction And Functional Evaluation Of Dietary Fiber From Papaya (Carica Papaya L), Guihun Jiang, Kashif Ameer, Karna Ramachandraiah, Xiaoyu Feng

School of Medicine Faculty Publications

This study evaluates the structural, physicochemical, functional and rheological properties of papaya dietary fibers (DFs) extracted by alkaline, water and combination of water/wet ball milling. The particle size of DF subjected to water/wet ball milling (WB-DF) was considerably reduced compared to DF extracted by water (W-DF) or alkaline (AL-DF) methods. WB-DF in comparison AL-DF increased the water holding capacity (WHC) by 4.1 folds, oil holding capacity (OHC) by 1.7 folds and water swelling capacity (WSC) by 2.6 folds. WB-DF also improved the cholesterol adsorption capacity (CAC), glucose adsorption (GAC), nitrite-ion adsorption capacity (NIAC) and antioxidant activity. The FT-IR spectra displayed …

Genome-Wide Association Study/ Genomic Prediction Of Cowpea Seed Protein And Black Seed Coat Color In Cowpea, Yilin Chen

Graduate Theses and Dissertations

Cowpea (Vigna unguiculata [L.] Walp) is a crucial crop in many regions, serving as a vital protein source for humans and livestock. Addressing the need to enhance its nutritional quality and make it easier to cultivate cowpeas of specific colors, this study utilized genome-wide association studies (GWAS) to identify markers associated with protein content and seed coat color patterns in cowpea.

In the protein content study, a GWAS was conducted on 161 cowpea accessions using 110,155 high-quality single-nucleotide polymorphisms (SNPs). Seven significant SNP markers were identified, all located at a locus on chromosome 8 associated with the gene Vigun08g039200, enhancing …

Avoidant/Restrictive Food Intake Disorder Prevalence Is High In Children With Gastroparesis And Functional Dyspepsia, Isha Kaul, Helen Burton-Murray, Salma Musaad, Yiming Mirabile, Danita Czyzewski, Miranda A L Van Tilburg, Andrew C Sher, Bruno P Chumpitazi, Robert J Shulman

Children’s Nutrition Research Center Staff Publications

BACKGROUND: Avoidant/restrictive food intake disorder (ARFID) prevalence in children with gastroparesis (Gp) and/or functional dyspepsia (FD) is unknown. We aimed to identify ARFID prevalence and trajectory over 2 months in children with Gp, FD, and healthy children (HC) using two screening questionnaires. We also explored the frequency of a positive ARFID screen between those with/without delayed gastric emptying or abnormal fundic accommodation.

METHODS: In this prospective longitudinal study conducted at an urban tertiary care hospital, patients ages 10-17 years with Gp or FD and age- and gender-matched HC completed two validated ARFID screening tools at baseline and 2-month follow-up: the …

Intra And Interspecific Competition Via Allelopathy Among Native And Non-Native Plants, Mimi Byrne, Robert Warren

Biology Theses

Invasive non- native species success often is attributed to their competitive superiority, potentially through allelochemical inhibition (allelopathy) of native species, as suggested by the novel weapons hypothesis. However, it is also possible that non- native species are able to be successful through decreased intraspecific competition. Decreased intraspecific competition could be attributed to a lack of genetic variation creating less variable allelopathic effects. I predict that if non- native species follow the novel weapons hypothesis, their allelochemicals will restrict more biomass and give them a competitive edge compared to native species. Additionally, I predict that if non- native species have lower …

Mate Guarding Against Strong Men Displaying Affiliative And Aggressive Humor, Jacob Pauley

Biological Sciences Undergraduate Honors Theses

Mate retention behaviors serve to discourage partner defection from a current pairbond. Such behaviors are oftentimes more prevalent toward intrasexual rivals exhibiting physical and behavioral cues implicating that rival as an optimal mate. Among these features in men are their upper body strength, a feature diagnostic of heritable fitness, and men's ability to produce humor, a cue to their social competence. This study considered the intersection of these desirable features in shaping men's mate retention behavior toward an intrasexual rival. After learning of a hypothetical interloper exhibiting high or low upper body strength while similarly using humor in an affiliative …

Effect Of Progesterone On Cognition Among College Aged Women, Katelyn Helberg

Biological Sciences Undergraduate Honors Theses

Women who have a reoccurring menstrual cycle and do not take hormonal birth control naturally experience changes in the amount of sex hormones that their body produces. These sex hormones help promote sexual development, fertility, and mood regulation, but can be hard to study due to their conflicting effects on each other. One such hormone, progesterone, is produced in different concentrations throughout the menstrual cycle to prepare the uterus for a potential pregnancy. However, it also may have secondhand effects on how well women can complete everyday tasks involving memory, attention, processing speed, and more which is what we measured …

A Meta-Analysis For Laboratory Diagnostics For Coccidioidomycosis, Mary C. Cowen

Biological Sciences Undergraduate Honors Theses

Coccidioidomycosis, commonly referred to as Valley Fever, is a fungal infection found in arid regions of the southwestern United States and Mexico. Infection occurs through inhalation of airborne spores from Coccidioides species, Coccidioides immitis and/or Coccidioides posadasii, and proceeds in both pulmonary and disseminated fashions. Approximately 60% of patients with coccidioidomycosis remain asymptomatic, while 40% will experience symptoms. Within the literature, there are no papers that summarize sensitivity and specificity values between different tests; therefore, this paper presents sensitivity and specificity results across different tests and companies (Meridian, IMMY, and MiraVista).