Life Sciences Commons^™

How Local Interactions Give Rise To Large-Scale Conformational Changes In Proteins: A Molecular Dynamics Study, Shadi A. Badiee

Graduate Theses and Dissertations

Proteins are dynamic entities that undergo conformational changes essential for their biological functions. These structural changes often correspond with chemical events such as lipid interactions or environmental changes like protonation or acidification. Understanding the complex relationship between these chemical perturbations and the resultant mechanical responses is crucial for elucidating protein mechanisms. This dissertation investigates the chemo-mechanical coupling in the conformational dynamics of the bacterial ABC transporter Sav1866 and the impact of protonation on the Influenza virus hemagglutinin HA0. Using molecular dynamics simulations, we explore the conformational landscapes of Sav1866 and HA0. Our study examines how varying lipid compositions affect the …

Analyzing The Accuracy And Trading Strategy Potential Of Private Analyst Projections Of Usda Wasde Reports, Emmie Noyes

Graduate Theses and Dissertations

This thesis investigates the economic impact of private analyst forecasts on trading strategies in agricultural commodities markets. The primary objective is to assess whether private forecasts of world ending stocks contained in the USDA’s WASDE report provide valuable information for forming profitable trading strategies. The study utilizes panel regression models to analyze the relationship between private forecast accuracy and strategic returns derived from trading strategies based on these forecasts. The research employs unbalanced panel data spanning from January 2011 to April 2021, integrating monthly and yearly indicators to capture temporal patterns. The dataset includes observations from multiple firms, allowing for …

Investigating The Role Of Insulin-Like Signaling In Paclitaxel-Induced Nociceptive Hypersensitivity Using Drosophila Melanogaster, Sreepradha Sridharan

Dissertations and Theses (Open Access)

Paclitaxel (PTX), a chemotherapeutic that alters microtubule dynamics, is known to induce nociceptive hypersensitivity and sensory neuron damage in human patients and in Drosophila larvae. We used a modified feeding protocol to establish a genetically tractable Drosophila model of PTX-induced hypersensitivity. Larvae fed PTX exhibited hypersensitivity to thermal and mechanical stimuli. Thermal hypersensitivity was observed at low concentrations of PTX (even below 1 μM per ml of food), begins within 8 hours of PTX feeding, and did not completely resolve at the larval stage. Live imaging of peripheral thermal nociceptors showed that this hypersensitivity precedes observable neuronal damage. At low …

The Effects Of An Acute Dose Of Cannabidiol On Health And Two-Mile Time Trial Performance, Elyssa Bell

Master's Theses

As more studies exploring the therapeutic effects of cannabidiol (CBD) in both clinical and non-clinical populations continue to increase, there is a renewed interest in the ability of CBD to affect performance. In fact, many anecdotal reports in the media and online suggest that CBD may improve performance. Unfortunately, very few studies support these claims and research in the area is limited. Purpose: The purpose of this study is to explore the effects of an acute dose of CBD on anxiety symptoms, GI distress, heart rate variability (HRV), heart rate (HR), blood pressure (BP), blood lactate (BL) rate of perceived …

Assessing The Impacts Of Grazing By Piney Woods Cattle And Controlled Burning On The Herbaceous Layer In An East Gulf Coastal Plain Longleaf Pine Woodland, William Mcfarland

Master's Theses

Fire and grazing are two disturbances which influence vegetation composition and diversity in many ecosystems. In the southeastern United States, longleaf pine plant communities are adapted to frequent fires and are likely to have been grazed by bison in the past. Though bison have been extirpated from this region, Pineywoods Cattle, which were introduced by the Spanish in the 16^th Century, have been fulfilling a similar role in many of these communities. This study examines the effects that combined grazing and controlled burning have on plant diversity, biomass, and community similarity in a longleaf pine savanna in the East …

Investigation Of The Microbiome Of A Recirculating Aquaculture System (Ras) For Crassostrea Virginica Larvae, Isabelle Townsend

Master's Theses

Recirculating Aquaculture Systems (RAS) offer control over physicochemical and biological factors impacting aquaculture success. One understudied facet of RASs is the water microbiome. Oyster larval microbiomes are shaped by their aquatic microbiomes. Understanding the dynamics of and the factors shaping RAS microbiome may provide insights to how the microbiome can be a tool for optimizing larval production. This study’s goals were to investigate the microbiome stability of a RAS rearing oyster larvae across time and space, determine impacts of larval presence on the microbiome, and examine connections between larvae production outcomes and microbiome stability. Water samples were collected weekly from …

Effects Of Hypoxia On Monocyte Differentiation And Macrophage Specification During Ischemic Heart Injury, Farid Faridovich Kadyrov

Arts & Sciences Graduate Student Theses and Dissertations

Myocardial infarction (MI) occurs following cessation of blood flow to an area of the heart and leads to ischemia, cardiomyocyte death, and inflammation. Chronically, MI initiates a compensatory process referred to as left ventricular remodeling, which is characterized by cardiomyocyte hypertrophy, fibrosis, and a decline in heart function. Left ventricular remodeling is central to the pathogenesis of heart failure. During myocardial infarction, Ly6chigh CCR2+ monocytes enter the heart and differentiate into a variety of macrophage populations including inflammatory CCR2+ macrophages. Resident cardiac macrophages are also present within the heart at homeostasis. Previous research from several groups has shown that once …

Functional Contribution Of Epithelial To Mesenchymal Transition Program On Krasg12d Targeting Efficacy In Pancreatic Cancer, Ana S. Maldonado

Dissertations and Theses (Open Access)

Functional contribution of epithelial to mesenchymal transition program on KRAS^G12D targeting efficacy in pancreatic cancer

Ana S. Maldonado, BS

Advisory Professor: Raghu Kalluri, M.D., Ph.D.

Pancreatic Ductal Adenocarcinoma (PDAC), a highly aggressive, metastatic, and therapeutically resistant form of pancreatic cancer has been projected to become the second-leading cause of cancer related mortality in the United States. This is driven by its detection difficulty, treatment efficacy, and asymptomatic nature, among other factors. PDAC is driven predominantly by KRAS^G12D mutations, which are responsible for the initial development of pancreatic intraepithelial neoplasia (Pan-IN) lesions, that are further maintained and progressed until …

The Role Of The Circadian Clock In The Paraventricular Nucleus Of The Hypothalamus In Diurnal Energy Balance, Rachel Van Drunen

Dissertations and Theses (Open Access)

Circadian rhythms are internal biological rhythms that drive oscillations in physiology and metabolism. Maintained at the level of individual cells throughout the body, the circadian clock is necessary for driving tissue-specific temporal programs of energy balance. Though loss of the circadian transcription factor, BMAL1, in the paraventricular nucleus (PVN) of the hypothalamus has revealed its importance in driving rhythms in energy intake and metabolism, its transcriptional functions across time and in individual cell types in the PVN are not well understood. In this study, we show that loss of BMAL1 in the PVN not only results in arrhythmicity in processes …

The Influence Of Oxidative Stress On Ion Homeostasis And Glycolysis Activation, With Implications For Neurological Health And Multiple Sclerosis, Xavier Hayes

Graduate Student Dissertations, Theses, Capstones, and Portfolios

Multiple sclerosis (MS) is a neurodegenerative disease in which the body’s immune system attacks its own tissues, notably the neural cells, and one of the contributing factors to this is oxidative stress. Oxidative stress is the build-up of reactive oxygen species ROS that causes oxidative damage to the cells. Chronic and environmental stressors are explored as significant factors that exacerbate these conditions by disrupting cellular processes and energy metabolism. The paper reviews current literature on MS, examining the interplay between oxidative stress, environmental factors, and genetic predispositions. Additionally, it discusses how these factors contribute to MS, where the immune system …

Avian Communities Monitored Along A Successional Chronosequence In Bottomland Hardwood Forests In The Lower Mississippi Alluvial Valley, Eamonn Alasdair Thurmond

Electronic Theses and Dissertations

Bottomland hardwood forests in the Lower Mississippi Alluvial Valley have been extensively reduced due to agriculture conversion and altered hydrology. Remnant forests have undergone further degradation from sources such as a lack of forest management, invasive species, and reduced regeneration of oaks (Quercus spp.). Recent restoration efforts of bottomland hardwood forests have focused on implementing wildlife forestry practices that prioritize restoring wildlife habitat while retaining profitable timber harvests. In this study I surveyed bird communities in bottomland hardwood forests in the Lower Mississippi Alluvial Valley along a successional chronosequence. Birds were sampled using automated recording units over 10 days …

Linking Risk Preference, Women’S Empowerment, Farm Investment And Household Well-Being, Samuel Olusesi Olumide

Department of Agricultural Economics: Dissertations, Theses, and Student Research

A nuanced understanding of intra-household dynamics can inform the design of more effective empowerment and agricultural investment policies. By integrating household risk preferences and empowerment dynamics, this work offers valuable insights into the complex mechanisms driving household welfare and provides a framework for future interventions to promote gender equality and economic development in rural settings. This thesis addresses three core hypotheses: first, that the spouses of risk-seeking male heads are more likely to be disempowered compared to those of risk-averse male heads; second, that households with risk-seeking male heads and disempowered spouses are likely to invest more in farming activities; …

Investigating Associations Between Activity And Performance Traits Across Three Breeds Of Swine Using NuTrack, Dalton R. Obermier

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Feed costs are the largest contributor towards the variable costs of pork production. To decrease feed cost while not sacrificing output requires an improvement in feed efficiency (FE). A potential approach to expand available phenotypes associated with FE is with activity tracking, yet the relationship between activity and performance is not well defined in swine. Therefore, the objective of this study was to quantify associations between activity and feed intake traits. Average daily feed intake (ADFI) was collected on 1,766 purebred boars of three genetic lines (Duroc, Landrace, and Yorkshire) using FIRE (Osborne Industries, Inc., Osborne, Kansas) at a testing …

Impact Of Thermal-Hydric Stress Of Physiological Performance And Mating Behavior Of Fiddler Crabs, Talene G. Yeghissian

Dissertations

Fiddler crabs live on the edge of their thermal tolerance limits, balancing the need to thermoregulate with the need to mate. Previous research suggests that increased temperature reduces fiddler crab surface activity time, thus decreasing mating opportunities, throughout the range species with greatest impacts to low latitude populations. The less studied missed mating opportunities associated with behavioral compensation for thermal stress are crucial to understanding species vulnerability to climate change. In this dissertation, I describe a combination of experimental and observational approaches in the field and in the laboratory to investigate the physiological and behavioral responses of fiddler crabs to …

The Drivers And Ecological Importance Of Streamflow Permanence For Native Salmonids: Evaluated At Multiple Spatio-Temporal Scales, Skylar Rousseau

All Graduate Theses and Dissertations, Fall 2023 to Present

In freshwater ecosystems, aquatic resources are distributed patchily across both space and time. Non-permanent streams, which go through periodic episodes of drying and rewetting, account for more than half of all streams in North America and help create much of the diversity that defines aquatic ecosystem form and function. While non-permanent streams have become increasingly common under climate change, we have a poor understanding of both their distribution across the landscape as well as how native stream fishes make use of them when they are flowing. I analyzed a large data set that spanned multiple decades across the northern Rocky …

Evaluating Bluebunch Wheatgrass Plant Materials For The Central Great Basin And Range, Mckenna Delton

All Graduate Theses and Dissertations, Fall 2023 to Present

Bluebunch wheatgrass is a perennial grass from North America’s Intermountain West. This area has faced many ecological disturbances, including dryland farming, wildfire, and grazing. These have led to a decline in the populations of native perennial grasses. While bluebunch used to be widespread throughout the region, it often cannot compete with some non-native grasses that are better adapted to these disturbances. Therefore, there is a demand for bluebunch wheatgrass plant materials that have undergone selection for overall better performance in restoration.

Most existing plant materials for bluebunch wheatgrass come from the Columbia Plateau region, but interest is growing in new …

Cerebrovascular Reactivity Mri As A Biomarker For Cerebral Small Vessel Disease–Related Cognitive Decline: Multi-Site Validation In The Markvcid Consortium, Peiying Liu, Zixuan Lin, Kaisha Hazel, George Pottanat, Cuimei Xu, Dengrong Jiang, Jay J. Pillai, Emma Lucke, Christopher E. Bauer, Brian T. Gold, Steven M. Greenburg, Karl G. Helmer, Kay Jann, Gregory Jicha, Joel Kramer, Pauline Maillard, Rachel M. Mulavelil, Pavel Rodriguez, Claudia L. Satizabal, Kristin Schwab, Sudha Seshadri, Herpreet Singh, Ángel G. Velarde Dediós, Danny J. J. Wang, Rita R. Kalyani, Abhay Moghekar, Paul B. Rosenberg, Sevil Yasar, Marilyn Albert, Hanzhang Lu

Neurology Faculty Publications

INTRODUCTION: Vascular contributions to cognitive impairment and dementia (VCID) represent a major factor in cognitive decline in older adults. The present study examined the relationship between cerebrovascular reactivity (CVR) measured by magnetic resonance imaging (MRI) and cognitive function in a multi-site study, using a predefined hypothesis.

METHODS: We conducted the study in a total of three analysis sites and 263 subjects. Each site performed an identical CVR MRI procedure using 5% carbon dioxide inhalation. A global cognitive measure of Montreal Cognitive Assessment (MoCA) and an executive function measure of item response theory (IRT) score were used as outcomes.

RESULTS: CVR …

Characterizing Gsk3Β Interaction And Kinetics Via Isothermal Titration Calorimetry, W A Bhagya De Silva

UNLV Theses, Dissertations, Professional Papers, and Capstones

Glycogen synthase kinase 3β (GSK3β) is a multifunctional serine/threonine kinase involved in several key signaling pathways, including glycogen metabolism, WNT/β-catenin, and Hedgehog signaling. Hyperactivity of GSK3β has been linked to Alzheimer’s disease, bipolar disorder, type II diabetes, and some cancers. Therefore, GSK3β is of interest as a target for therapeutics. Lithium ion (Li+) is a classical inhibitor of GSK3β. Structurally similar beryllium ion (Be2+) is ~1000-fold more potent. Lithium and beryllium have demonstrated pathway-specific and cell type-specific inhibition of GSK3β, prompting an investigation into the inhibitory mechanisms and thermodynamic characteristics of the metal-enzyme interaction.Isothermal titration calorimetry (ITC) is a label-free …

Distribution Of Great Horned Owls (Bubo Virginianus) Near Breeding Grounds Of The Reintroduced Northern Aplomado Falcon (Falco Femoralis Septentrionalis) At Laguna Atascosa National Wildlife Refuge In Coastal South Texas, David Roman Bontrager

Boise State University Theses and Dissertations

Habitat change is the leading cause of species extinctions and declines worldwide. In addition to species losses, habitat changes can also alter species behavior, diet, and the way they interact with other species. Less than one percent of coastal grasslands and prairies in Texas, U.S.A. remain intact as a result of agriculture, urbanization, and woody plant encroachment. This loss of Texas grasslands has resulted in bottom-up impacts, including the extirpations of multiple species that inhabited these ecosystems, such as the Northern Aplomado Falcon (Falco femoralis septentrionalis), Attwater’s Prairie Chicken (Tympnuchus cupido attwateri), and Pronghorn (Antilocapra …

Hindcasting Water Availability In Semi-Arid Systems, Nicholas E. Kolarik

Boise State University Theses and Dissertations

Dryland systems cover one third of the earth’s land surface and are becoming increasingly drier, but existing datasets do not capture all of the types of available water that sustain these systems. In semi-arid environments, small surface water bodies and areas of mesic vegetation (wetlands, wet meadows, riparian zones) function as critical water resources. However, the most commonly-used maps of water availability are derived from the Landsat time series or single date aerial photographs, and are either too coarse spatially or temporally to effectively monitor dynamics of available water. In Chapter 1, I produced a Sentinel Fusion (SF) water resources …

Associations Between Landscape Changes And Declines In Golden Eagle Territory Occupancy In The Morley Nelson Snake River Birds Of Prey National Conservation Area, Ashley Santiago

Boise State University Theses and Dissertations

Rapid loss of native shrubs and expansion of invasive annuals like cheatgrass (Bromus tectorum) have extensively altered shrub-steppe systems. Vegetation changes can have bottom-up effects on trophic interactions and ecosystem dynamics. Predators, like Golden Eagles (Aquila chrysaetos) that forage on shrub-reliant prey, may increase their territory size to cope with degraded habitat or abandon historically occupied territories. We used a multi-season occupancy model that accounted for imperfect detection to investigate the associations between landscape cover (i.e., shrub and annual herbaceous), fire history, neighbor density, and territory occupancy of 36 Golden Eagle nesting territories in the Morley …

Effortless Mindfulness Toolkit: Easy Meditation Scripts To Begin Each Class., Brett Whysel

Open Educational Resources

The Effortless Mindfulness in the Classroom Toolkit is an open educational resource designed to create happier classrooms, boost student engagement, and foster a sense of community through brief, effective mindfulness exercises. This comprehensive toolkit provides educators with everything they need to seamlessly integrate mindfulness practices into their teaching routines, regardless of prior experience. The toolkit includes introductory slides, 15 ready-to-use meditation scripts, and accompanying audio recordings, covering a variety of mindfulness techniques such as focused breathing, body scans, and loving-kindness meditations. Each meditation is paired with a reflective prompt to deepen student engagement and reinforce the benefits of mindfulness. Additionally, …

A Grain Of Hope: Analysis Of The Economic Potential For An Association Of South East Asian Nations (Asean) Rice Futures Market, Richard Nyarko

Graduate Theses and Dissertations

The ASEAN (Association of Southeast Nations) region is the world's leading rice producer, yet the region lacks a dedicated rice futures market. In contrast other world grain markets are served by liquid futures contracts, which aid producers through price discovery and risk management. This glaring gap raises a critical question: Can an ASEAN rice futures market be established to unlock the potential economic benefits for the region's rice sector? By predicting ASEAN rice pricing features and analyzing the efficacy of hedging for regional rice market players, this study explores the viability of an ASEAN rice futures contract to service the …

High Fat Diet & Social Isolation: Interactive Effects On Pain, Cognition, & Neuroinflammation, Ian M. Campuzano

Research Psychology Theses

Prior research has established a role for both social isolation and exposure to high fat Western diets in altering a range of behaviors from reduced memory performance to increased depression-like behaviors. The present study scrutinizes the interplay among these variables during the peri-adolescent developmental phase, utilizing Long-Evans rats as the experimental model. Our overarching hypothesis is that rats exposed to either social isolation, a high-fat diet, or both will result in heightened pain sensitivity, diminished cognitive flexibility, and increased neuroinflammatory responses within brain regions implicated in sociability, cognition, memory, and pain processing. Behavioral flexibility will be assessed using a maze-based …

An Analysis Of Fish Assemblages And Flow Regimes Upstream And Downstream Of Falcon Reservoir, Christopher J. Austin

Theses and Dissertations

The lower Rio Grande is regulated by Falcon and Amistad dams. Native fish species rely on the natural flow regime for habitat and spawning. I analyzed streamflow discharge and fish assemblages above and below Falcon Reservoir to assess potential impacts of dam impoundment. Fish collections were conducted by seine, and river discharge data was provided by the International Boundaries and Water Commission. I found significant differences in fish assemblages above vs below Falcon Reservoir, and the flow regime was significantly more altered downstream of Falcon Reservoir. I also identified two Species of Greatest Concern for Texas above Falcon Reservoir (Notropis …

Current Trends In Bee Conservation And Habitat Restoration In Different Types Of Anthropogenic Habitats, Olivia Kline, Neelendra K. Joshi

Entomology and Plant Pathology Faculty Publications and Presentations

Recent declines in bee populations and ranges have been cause for concern due to the valuable pollination service that they provide. Several factors have been proposed to contribute to these declines, including habitat loss, pathogen spread, and pesticide usage, so many pollinator conservation schemes have involved the addition of pollinator-friendly habitat through wildflower plantings and artificial nesting sites. Because of this, many efforts have been made to enhance bee populations across different landscape types, including natural, agricultural, urban, and industrial areas. Many of these schemes have focused on providing habitat for bees and other animal pollinators in agricultural landscapes, but …

Effects Of Winter Ticks (Dermacentor Albipictus) On The Reproduction Of Utah Moose (Alces Alces Shirasi), Samuel D. Robertson

All Graduate Theses and Dissertations, Fall 2023 to Present

Moose (Alces alces) are the largest and only solitary members of the deer family. The species can be found across many northern regions around the world. Moose are considered to have high intrinsic, recreational and ecological value. In recent years, there have been concerns about declining moose populations in portions of the species circumpolar range. Moose in Utah (Alces alces shirasi) belong to the Shiras subspecies, which is the smallest of the four subspecies found in North America. Utah moose are the southernmost naturally occurring moose population in the world. The Utah Division of Wildlife Resources …

Agronomic Practices To Enhance Weed Management, Department Of Primary Industries And Regional Development, Western Australia

Grains and other field crops factsheets

Some agronomic practices, such as crop choice and sequence and improving crop competition and pasture competition, can improve crop environment and growth, and the crop's ability to compete with weeds.

Transcriptomics Analysis Reveals Potential Regulatory Role Of Nsmase2 (Smpd3) In Nervous System Development And Function Of Middle-Aged Mouse Brains, Zhihui Zhu, Timothy S. Mcclintock, Erhard Bieberich

Markey Cancer Center Faculty Publications

Neutral sphingomyelinase-2 (nSMase2), gene name sphingomyelin phosphodiesterase-3 (Smpd3), is a key regulatory enzyme responsible for generating the sphingolipid cer- amide. The function of nSMase2 in the brain is still controversial. To better under- stand the functional roles of nSMase2 in the aging mouse brain, we applied RNA-seq analysis, which identified a total of 1462 differentially abundant mRNAs between +/fro and fro/fro, of which 891 were increased and 571 were decreased in nSMase2-deficient mouse brains. The most strongly enriched GO and KEGG annota- tion terms among transcripts increased in fro/fro mice included synaptogenesis, syn- apse development, synaptic signaling, axon development, and …

Cigarette Smoke-Induced Epithelial-To-Mesenchymal Transition: Insights Into Cellular Mechanisms And Signaling Pathways, Sarah Mohammed Alqithami, Amrita Machwe, David K. Orren

Markey Cancer Center Faculty Publications

This review delves into the molecular complexities underpinning the epithelial-to-mesenchymal transition (EMT) induced by cigarette smoke (CS) in human bronchial epithelial cells (HBECs). The complex interplay of pathways, including those related to WNT//β-catenin, TGF-β/SMAD, hypoxia, oxidative stress, PI3K/Akt, and NF-κB, plays a central role in mediating this transition. While these findings significantly broaden our understanding of CS-induced EMT, the research reviewed herein leans heavily on 2D cell cultures, highlighting a research gap. Furthermore, the review identifies a stark omission of genetic and epigenetic factors in recent studies. Despite these shortcomings, the findings furnish a consolidated foundation not only for the …