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Articles 20461 - 20490 of 256031
Full-Text Articles in Life Sciences
Development Of An In Vitro Squamous Metaplasia Model Using Airway Basal Stem Cells, Arash Tahmasbi
Development Of An In Vitro Squamous Metaplasia Model Using Airway Basal Stem Cells, Arash Tahmasbi
Electronic Theses, Projects, and Dissertations
Squamous metaplasia (SM) of the airway epithelium is an abnormal condition that is caused by exposure to airborne toxicants, cigarette smoke, pollutants, and pathogens. Since SM of the airway was first documented in the 1970s, data on this epithelial disease remain limited. More research is needed to fully understand this epithelial disorder and to prevent its progression into severe illnesses such as chronic bronchitis (CB), COPD, and squamous cell carcinoma. We developed 3D models of SM using airway basal stem cells (ABSCs) isolated from lung obtained from postmortem human donors. The ABSCs were cultured at the air-liquid interface (ALI) for …
The Effects Of Wildfires On Predation Risk, Perch Selection, And Background-Matching In Western Fence Lizards, Elmer Ernesto Gutierrez
The Effects Of Wildfires On Predation Risk, Perch Selection, And Background-Matching In Western Fence Lizards, Elmer Ernesto Gutierrez
Electronic Theses, Projects, and Dissertations
Fires are a naturally occurring phenomenon, driving a range of behavioral, reproductive, and morphological adaptations in wildlife. However, we are now living in a new geological epoch—the Pyrocene—characterized by human-induced extreme fire behavior. This shift results in a need to understand how animals survive and adapt in post-fire environments. In this study, we investigated the following questions: (1) Does predation risk increase in burned habitats after a fire? (2) How does dorsal darkness morphology vary between burned and unburned habitats? and (3) Do animals select perches that enhance their background-matching in post-fire environments? We used the Western Fence Lizard ( …
Dual Mechanisms Of Salinity Tolerance In Wheat Germplasm Lines W4909 And W4910, Richard R.-C. Wang, Steven S. Xu, Thomas A. Monaco, Matthew D. Robbins
Dual Mechanisms Of Salinity Tolerance In Wheat Germplasm Lines W4909 And W4910, Richard R.-C. Wang, Steven S. Xu, Thomas A. Monaco, Matthew D. Robbins
Forage and Range Research Laboratory Publications
Soil salinity adversely affects plant growth and development, reducing the yield of most crops, including wheat. The highly salt-tolerant wheat germplasm lines W4909 and W4910 were derived from a cross between two moderately salt-tolerant lines, the Chinese Spring (CS)/Thinopyrum junceum disomic addition line AJDAj5 (AJ) and the Ph-inhibitor line (Ph-I) derived from CS/Aegilops speltoides. Molecular markers for gene introgressions in W4909 and W4910 were not reported. Four sequence-tagged site (STS) molecular markers of Ph-I were developed and tested in the above-mentioned lines and the F2 progenies of the two crosses, Anza (AZ) x 4740 (sib of …
Finding Them Before They Find Us: Solving The Emerging Infectious Disease Crisis, Daniel R. Brooks
Finding Them Before They Find Us: Solving The Emerging Infectious Disease Crisis, Daniel R. Brooks
MANTER: Journal of Parasite Biodiversity
The human population grows daily, it’s on the move, and it’s carving a deep technological footprint on our planet. We alter landscapes and perturb ecosystems, inserting ourselves and other species into novel regions of the world, leading to potentially irreversible changes in the biosphere. This is not news. More than 75 years ago, Charles Elton, one of the founders of modern ecology, wrote, “We must make no mistake; we are seeing one of the greatest historical convulsions in the world’s fauna and flora.” We are also in the midst of a public health and epidemiological crisis. Climate change alters movements …
Accounting For Post-Release Mortality In Data-Limited, Length-Based Assessments For Four Demersal Fish Species With Varying Life Histories, Brett Crisafulli, Sybrand A. Hesp, Ebenezer Afrifa-Yamoah, Ute A. Mueller, Karina L. Ryan, David V. Fairclough, Norman G. Hall, Johnny Lo
Accounting For Post-Release Mortality In Data-Limited, Length-Based Assessments For Four Demersal Fish Species With Varying Life Histories, Brett Crisafulli, Sybrand A. Hesp, Ebenezer Afrifa-Yamoah, Ute A. Mueller, Karina L. Ryan, David V. Fairclough, Norman G. Hall, Johnny Lo
Fisheries Research Articles
Released (or discarded) fish from recreational and commercial line fisheries can experience significant levels of post-release mortality (PRM), affecting sustainability. Although PRM effects are often considered in data-rich (integrated model) assessments, this is uncommon in data-limited assessments. This study investigates impacts of PRM when applying data-limited, length-based assessment methods for four reef-dwelling demersal fish species in temperate Western Australia (Glaucosoma hebraicum, Chrysophrys auratus, Choerodon rubescens and Epinephelides armatus). These species differ considerably in their biology and susceptibility to PRM. For each species simulations were undertaken to (1) evaluate the reliability of a length-based catch curve (LBCC) …
Opa1 And Disease-Causing Mutants Perturb Mitochondrial Nucleoid Distribution, J. Macuada, I. Molina-Riquelme, G. Vidal, N. Pérez-Bravo, C. Vásquez-Trincado, G. Aedo, D. Lagos, P. Yu-Wai-Man, R. Horvath, T. J. Rudge, B. Cartes-Saavedra, V. Eisner
Opa1 And Disease-Causing Mutants Perturb Mitochondrial Nucleoid Distribution, J. Macuada, I. Molina-Riquelme, G. Vidal, N. Pérez-Bravo, C. Vásquez-Trincado, G. Aedo, D. Lagos, P. Yu-Wai-Man, R. Horvath, T. J. Rudge, B. Cartes-Saavedra, V. Eisner
Department of Pathology, Anatomy, and Cell Biology Faculty Papers
Optic atrophy protein 1 (OPA1) mediates inner mitochondrial membrane (IMM) fusion and cristae organization. Mutations in OPA1 cause autosomal dominant optic atrophy (ADOA), a leading cause of blindness. Cells from ADOA patients show impaired mitochondrial fusion, cristae structure, bioenergetic function, and mitochondrial DNA (mtDNA) integrity. The mtDNA encodes electron transport chain subunits and is packaged into nucleoids spread within the mitochondrial population. Nucleoids interact with the IMM, and their distribution is tightly linked to mitochondrial fusion and cristae shaping. Yet, little is known about the physio-pathological relevance of nucleoid distribution. We studied the effect of OPA1 and ADOA-associated mutants on …
Validation Studies Of The Flash-Tv System To Passively Measure Children’S Tv Viewing, Anil Kumar Vadathya, Tatyana Garza, Uzair Alam, Alex Ho, Salma M A Musaad, Alicia Beltran, Jennette P Moreno, Tom Baranowski, Nimah Haidar, Sheryl O Hughes, Jason A Mendoza, Ashok Veeraraghavan, Joseph Young, Akane Sano, Teresia M O'Connor
Validation Studies Of The Flash-Tv System To Passively Measure Children’S Tv Viewing, Anil Kumar Vadathya, Tatyana Garza, Uzair Alam, Alex Ho, Salma M A Musaad, Alicia Beltran, Jennette P Moreno, Tom Baranowski, Nimah Haidar, Sheryl O Hughes, Jason A Mendoza, Ashok Veeraraghavan, Joseph Young, Akane Sano, Teresia M O'Connor
Children’s Nutrition Research Center Staff Publications
TV viewing is associated with health risks, but existing measures of TV viewing are imprecise due to relying on self-report. We developed the Family Level Assessment of Screen use in the Home (FLASH)-TV, a machine learning pipeline with state-of-the-art computer vision methods to measure children's TV viewing. In three studies, lab pilot (n = 10), lab validation (n = 30), and home validation (n = 20), we tested the validity of FLASH-TV 3.0 in task-based protocols which included video observations of children for 60 min. To establish a gold-standard to compare FLASH-TV output, the videos were labeled by trained staff …
Crosstalk Of Pyroptosis And Cytokine In The Tumor Microenvironment: From Mechanisms To Clinical Implication, Hua Wang, Tao Wang, Shuxiang Yan, Jinxin Tang, Yibo Zhang, Haodong Xu
Crosstalk Of Pyroptosis And Cytokine In The Tumor Microenvironment: From Mechanisms To Clinical Implication, Hua Wang, Tao Wang, Shuxiang Yan, Jinxin Tang, Yibo Zhang, Haodong Xu
Faculty, Staff and Student Publications
In the realm of cancer research, the tumor microenvironment (TME) plays a crucial role in tumor initiation and progression, shaped by complex interactions between cancer cells and surrounding non-cancerous cells. Cytokines, as essential immunomodulatory agents, are secreted by various cellular constituents within the TME, including immune cells, cancer-associated fibroblasts, and cancer cells themselves. These cytokines facilitate intricate communication networks that significantly influence tumor initiation, progression, metastasis, and immune suppression. Pyroptosis contributes to TME remodeling by promoting the release of pro-inflammatory cytokines and sustaining chronic inflammation, impacting processes such as immune escape and angiogenesis. However, challenges remain due to the complex …
First Record Of The Mexican-M Hairstreak Parrhasius Moctezuma (Clench, 1971) (Lepidoptera: Lycaenidae) In Texas, Usa, And Possible Sighting Of The Tequila Giant Skipper Aegiale Hesperiaris (Walker, 1856) (Lepidoptera: Hesperiidae), Sajan Kc, Anisha Sapkota
First Record Of The Mexican-M Hairstreak Parrhasius Moctezuma (Clench, 1971) (Lepidoptera: Lycaenidae) In Texas, Usa, And Possible Sighting Of The Tequila Giant Skipper Aegiale Hesperiaris (Walker, 1856) (Lepidoptera: Hesperiidae), Sajan Kc, Anisha Sapkota
Insecta Mundi
We report two significant butterfly sightings in the United States, observed during an opportunistic photographic survey conducted in south Texas between December 2022 and January 2023. Parrhasius moctezuma (Clench, 1971) (Lepidoptera: Lycaenidae) was sighted at the National Butterfly Center in Mission, Texas on January 5, 2023, marking the first documented record of the species in Texas and only the second in the United States, as confirmed by photographic evidence. Additionally, Aegiale hesperiaris (Walker, 1856) (Lepidoptera: Hesperiidae) was potentially observed at the same location on December 4, 2022, although lacking photographic documentation or a collected specimen, highlighting the need for further …
The Puzzling Distribution Of Platphalonidia Aenigmana, New Species, From The Western U. S. A. And Colombia (Lepidoptera: Tortricidae: Cochylina), John W. Brown
Insecta Mundi
Platphalonidia aenigmana Brown, new species (Lepidoptera: Tortricidae), is described and illustrated from Arizona, California, and Oregon, U. S. A. and Colombia, South America. The new species has been reared on numerous occasions from Garrya elliptica Dougl. ex Lindl. (Garryaceae) in northern California and Oregon, once on Arctostaphylos sp. (Ericaceae) in southern California, and once on Gomphrena globosa L. (Amaranthaceae) in Colombia. Various hypotheses are explored to explain the unusual disjunct geographic distribution of the species. In addition, Phalonidia bassii Razowski (Tortricidae) is transferred to Saphenista Walsingham, resulting in Saphenista bassii (Razowski, 1999), new combination.
A New Species Of Cymatodera Gray (Coleoptera: Cleridae) From Central Arizona, Jacques Rifkind
A New Species Of Cymatodera Gray (Coleoptera: Cleridae) From Central Arizona, Jacques Rifkind
Insecta Mundi
Cymatodera campbelli, new species (Coleoptera: Cleridae), is described from central Arizona, United States. Though superficially similar to several other small species of Southwestern Cymatodera Gray that are commonly collected at lights, this apparently rare species has distinctive coloration and surface sculpturing. Its discovery suggests that systematic collecting even in areas that have historically attracted entomological attention may still yield additions to our fauna.
Genomic Analysis Reveals Hidden Species Diversity In Emesis Fabricius (Lepidoptera: Riodinidae), Jing Zhang, Qian Cong, Jinhui Shen, Leina Song, Nick V. Grishin
Genomic Analysis Reveals Hidden Species Diversity In Emesis Fabricius (Lepidoptera: Riodinidae), Jing Zhang, Qian Cong, Jinhui Shen, Leina Song, Nick V. Grishin
Insecta Mundi
Genomic analysis of Emesis [Fabricius], 1807 (Lepidoptera: Riodinidae Grote, 1895) reveals species richness higher than anticipated. As a result, one subgenus, 22 species, and one subspecies are proposed as new (type species or type localities in parenthesis): Diogenia Grishin, new subgenus (Emesis diogenia Prittwitz, 1865), Emesis (Emesis) aerunda Grishin, new species (Peru: Rio Pachitea, Monte Alegre), Emesis (Emesis) bartica Grishin, new species (Guyana: Cuyuni-Mazaruni), Emesis (Emesis) fatimellina Grishin, new species (Brazil: Santa Catarina), Emesis (Emesis) panamella Grishin, new species (Panama: Darién), Emesis (Mandania) mandora Grishin, new species (Ecuador: …
De-Identification Is Not Enough: A Comparison Between De-Identified And Synthetic Clinical Notes
De-Identification Is Not Enough: A Comparison Between De-Identified And Synthetic Clinical Notes
Faculty, Staff and Student Publications
For sharing privacy-sensitive data, de-identification is commonly regarded as adequate for safeguarding privacy. Synthetic data is also being considered as a privacy-preserving alternative. Recent successes with numerical and tabular data generative models and the breakthroughs in large generative language models raise the question of whether synthetically generated clinical notes could be a viable alternative to real notes for research purposes. In this work, we demonstrated that (i) de-identification of real clinical notes does not protect records against a membership inference attack, (ii) proposed a novel approach to generate synthetic clinical notes using the current state-of-the-art large language models, (iii) evaluated …
First Records Of The Spider Wasp Entypus Ochrocerus Dahlbom (Hymenoptera: Pompilidae: Pepsinae) From The Continental United States, Jamaica, And The Bahamas, Frank E. Kurczewski, Rick C. West, Dionne Newell, Scott Johnson
First Records Of The Spider Wasp Entypus Ochrocerus Dahlbom (Hymenoptera: Pompilidae: Pepsinae) From The Continental United States, Jamaica, And The Bahamas, Frank E. Kurczewski, Rick C. West, Dionne Newell, Scott Johnson
Insecta Mundi
A small population of Entypus ochrocerus Dahlbom, a predominantly Greater Antilles spider wasp (Hymenoptera: Pompilidae: Pepsinae), is reported for the first time from the continental United States based on photographs and associated information from iNaturalist.org. The species was initially misidentified online as E. unifasciatus unifasciatus (Say) or Entypus sp. However, Entypus u. unifasciatus individuals from east of the 100th Meridian in the United States typically have melanochromatic (dark) wings with a subapical xanthochromatic (orange-amber) patch. Entypus ochrocerus from Miami-Dade County, Florida is differentiated from E. u. unifasciatus by its black body with dark greenish blue reflections …
New Country Records For Macroscython Granulosus Otto, 2016 (Coleoptera: Eucnemidae: Dromaeolinae: Dromaeolini), With Redescription Of The Female, Robert L. Otto, Jiří Háva
New Country Records For Macroscython Granulosus Otto, 2016 (Coleoptera: Eucnemidae: Dromaeolinae: Dromaeolini), With Redescription Of The Female, Robert L. Otto, Jiří Háva
Insecta Mundi
New country records for Macroscython granulosus Otto, 2016 (Coleoptera: Eucnemidae: Dromaeolinae: Dromaeolini), a eucnemid known only from Laos and Thailand, are reported from China and Nepal. A redescription and images of the female are provided.
Review Of Nealyda Dietz (Lepidoptera: Gelechiidae: Apatetrinae) With Description Of A New Species From The Florida Keys, Sidney V. Bennett, James E. Hayden
Review Of Nealyda Dietz (Lepidoptera: Gelechiidae: Apatetrinae) With Description Of A New Species From The Florida Keys, Sidney V. Bennett, James E. Hayden
Insecta Mundi
Nealyda grandipinella Bennett and Hayden, new species, is described from Big Pine Key, Florida, USA. Photographs of the adult and of male and female genitalia are provided for N. grandipinella and its congeners within the state of Florida. Nealyda Dietz (Lepidoptera: Gelechiidae) is provisionally transferred from Anomologinae to Apatetrinae based on characters of the genitalia. The homology and terminology of the processes arising from the vinculum of gelechiid genitalia are explored. The potential host plant of the new species is discussed, along with other undescribed species of Nealyda.
First Record Of The Camphor Shot Borer, Cnestus Mutilatus (Blandford) (Coleoptera: Curculionidae: Scolytinae), In Massachusetts, Lawrence E. Barringer
First Record Of The Camphor Shot Borer, Cnestus Mutilatus (Blandford) (Coleoptera: Curculionidae: Scolytinae), In Massachusetts, Lawrence E. Barringer
Insecta Mundi
Cnestus mutilatus (Blandford) (Coleoptera: Curculionidae: Scolytinae) is reported from Massachusetts, United States for the first time. Brief trapping information is provided.
Accumbal Plasticity And Associated Behavioral Adaptations In The Spared Nerve Injury Model Of Chronic Neuropathic Pain, Yu-Hsuan Chang
Accumbal Plasticity And Associated Behavioral Adaptations In The Spared Nerve Injury Model Of Chronic Neuropathic Pain, Yu-Hsuan Chang
Arts & Sciences Graduate Student Theses and Dissertations
Chronic pain is a debilitating neurological disorder that affects hundreds of millions of individuals worldwide. It is associated with cognitive symptoms such as cognitive inflexibility, which is defined as the inability to adaptively update behavior in response to changing environmental conditions. To date, there are no effective treatments for these symptoms, even though they substantially contribute to the decreased quality of life of chronic pain patients and are associated with reduced efficacy of pain management strategies. Therefore, understanding the neural circuit adaptations that drive cognitive symptoms of chronic pain, like cognitive inflexibility, is essential for improving existing treatments for this …
Household Food Expenditure Typology And Its Association With Child Stunting And Anemia In Indonesia, Ratu Ayu Dewi Sartika, Yusnita Yusnita, Winda M. Ningsih, Ririn Arminsih Wulandari, Siti A. Pujonarti, Fadila Wirawan
Household Food Expenditure Typology And Its Association With Child Stunting And Anemia In Indonesia, Ratu Ayu Dewi Sartika, Yusnita Yusnita, Winda M. Ningsih, Ririn Arminsih Wulandari, Siti A. Pujonarti, Fadila Wirawan
Kesmas
Stunting and anemia remain the coexisting nutritional problems among Indonesian children. However, evidence of household-level food expenditure and its association with child stunting and anemia is limited. This study aimed to observe the association between household food expenditure typology and child stunting and anemia in Indonesia. Data was obtained from the 2007 and 2014 Indonesia Family Life Survey (IFLS). The household food expenditure, child nutritional status, and anemia were observed in 2007 and 2014. Latent class analysis was taken to identify the food expenditure pattern. Binary logistic regression was applied to analyze the association between household food expenditure patterns and …
Dietary Diversity As A Dominant Factor Of Energy Intake Among Breastfeeding Mothers In Depok City, Indonesia, Cornelia Lugita Santoso, Ratu Ayu Dewi Sartika, Sandra Fikawati, Fadila Wirawan, Primasti Nuryandari Putri, Nurul Husna Mohd Shukri
Dietary Diversity As A Dominant Factor Of Energy Intake Among Breastfeeding Mothers In Depok City, Indonesia, Cornelia Lugita Santoso, Ratu Ayu Dewi Sartika, Sandra Fikawati, Fadila Wirawan, Primasti Nuryandari Putri, Nurul Husna Mohd Shukri
Kesmas
Maternal nutritional needs increase during lactation. However, the energy intake of breastfeeding mothers usually still falls short of the recommended adequacy levels. This study aimed to identify the dominant factor of energy intake in breastfeeding mothers in Sawangan District, Depok City, Indonesia. This quantitative study used a cross-sectional design from July 2022 to February 2023. Energy intake, dietary diversity, and eating frequency were collected using 24-hour food recall. Other variables were collected through interviews with structured questionnaires. Data were analyzed using the Chi-square test and binary logistic regression. A total of 217 breastfeeding mothers participated in this study. This study …
Heart Failure Beyond The Diagnosis: A Narrative Review Of Patients' Perspectives On Daily Life And Challenges, Michelle Shigi Yang, Mohamed Bilal Abdallah, Zubair Bashir, Wissam Khalife
Heart Failure Beyond The Diagnosis: A Narrative Review Of Patients' Perspectives On Daily Life And Challenges, Michelle Shigi Yang, Mohamed Bilal Abdallah, Zubair Bashir, Wissam Khalife
Faculty, Staff and Student Publications
Heart failure (HF) is a complex syndrome that significantly affects patients' physical, psychological, and socioeconomic well-being. Despite advances in guideline-directed medical therapy (GDMT), such as ACE inhibitors, beta-blockers, and SGLT2 inhibitors, HF continues to have a high global burden, with over 64 million affected worldwide and a five-year mortality rate of 50%. HF disrupts various life aspects, especially for younger patients (aged 35-55), who often face career interruptions due to severe symptoms like fatigue and frequent hospitalizations. These patients may struggle to maintain employment, resulting in financial instability compounded by high healthcare costs. Moreover, reduced exercise capacity and sexual dysfunction …
Legacy Effects Of Plant Community Structure Are Manifested In Microbial Biofilm Development With Consequences For Ecosystem Co Emissions, Kevin H. Wyatt, Jillian Cieslik, Catherine M. Dieleman, Evan Kane, Allison R. Rober, Barrett Sullivan, Merritt R. Turetsky
Legacy Effects Of Plant Community Structure Are Manifested In Microbial Biofilm Development With Consequences For Ecosystem Co Emissions, Kevin H. Wyatt, Jillian Cieslik, Catherine M. Dieleman, Evan Kane, Allison R. Rober, Barrett Sullivan, Merritt R. Turetsky
Michigan Tech Publications
To better understand linkages between hydrology and ecosystem carbon flux in northern aquatic ecosystems, we evaluated the relationship between plant communities, biofilm development, and carbon dioxide (CO) exchange following long-term changes in hydrology in an Alaskan fen. We quantified seasonal variation in biofilm composition and CO exchange in response to lowered and raised water table position (relative to a control) during years with varying levels of background dissolved organic carbon (DOC). We then used nutrient-diffusing substrates (NDS) to evaluate cause-effect relationships between changes in plant subsidies (i.e., leachates) and biofilm composition among water table treatments. We found that background DOC …
Soil Biogeography And Community Assembly In Polar Regions, Jesse Jorna
Soil Biogeography And Community Assembly In Polar Regions, Jesse Jorna
Theses and Dissertations
The polar regions provide community ecologists with natural microcosms, that include reduced species diversity, steep environmental gradients and limited human perturbance. Soil biodiversity in the polar regions is poorly understood, and the driving forces behind community compositions can range in scale from glacial forces 20,000 years ago to the impact of a researcher's footstep. Here, we present the results of an investigation of the driving factors behind biodiversity in Arctic and Antarctic soils, with specific attention to the role of community assembly processes. We suggest a framework for investigating the effects of inter-bacterial community processes like facilitation and argue for …
Human-Bear Conflict In North America (1880-2020): A Comprehensive Analysis Of Patterns, Outcomes And Interactions, Cody Robert Miller
Human-Bear Conflict In North America (1880-2020): A Comprehensive Analysis Of Patterns, Outcomes And Interactions, Cody Robert Miller
Theses and Dissertations
Human-bear (Ursus spp.) conflict (HBC) is an important issue facing wildlife managers across North America. It is essential that we understand the factors associated with HBCs in North America so that wildlife managers can make appropriate, science-based recommendations about how to avoid, and if necessary, survive such incidents. To that end, we present this comprehensive analysis of > 2,100 HBCs in the United States and Canada, ranging from 1880 to the present. This analysis includes the three native North American bear species: black bears (Ursus americanus), grizzly bears (U. arctos), and polar bears (U. maritimus) and assesses the role that twelve …
Association Of Acute Rejection And De Novo Renal Cell Carcinoma In Kidney Transplant Patients: An Optn Data Analysis, Molly Casey, Emmalie Yanacek, Hitesh Kaul, John Knorr, Kamran Khanmoradi, Afshin Parsikia, Nikolaos Chandolias, Kevin Zarrabi, Radi Zaki
Association Of Acute Rejection And De Novo Renal Cell Carcinoma In Kidney Transplant Patients: An Optn Data Analysis, Molly Casey, Emmalie Yanacek, Hitesh Kaul, John Knorr, Kamran Khanmoradi, Afshin Parsikia, Nikolaos Chandolias, Kevin Zarrabi, Radi Zaki
Einstein Health Papers
Background: Kidney Transplant Recipients (KTRs) are at risk of renal cell carcinoma (RCC). The risk of RCC in KTRs is approximated to be 5–10 times higher compared with the general population. A relation between kidney rejection and renal malignancy has been described and relates to the effect of immunosuppression at the genomic level. We decided to investigate any suggestive clinical evidence of this in the OPTN database. Methods: KTRs with de novo RCC between July 2004 and June 2022 were identified. Demographics, baseline characteristics, virology, and immunology data were compared between patients with and without RCC. Our follow-up period was …
Accelerated Historical And Future Warming In The Middle East And North Africa, Abdul Malik, Georgiy Stenchikov, Suleiman Mostamandi, Sagar Parajuli, Jos Lelieveld, George Zittis, Muhammad Sheraz Ahsan, Luqman Atique, Muhammad Usman
Accelerated Historical And Future Warming In The Middle East And North Africa, Abdul Malik, Georgiy Stenchikov, Suleiman Mostamandi, Sagar Parajuli, Jos Lelieveld, George Zittis, Muhammad Sheraz Ahsan, Luqman Atique, Muhammad Usman
All Works
The present study assesses the climate of the Middle East and North Africa (MENA) in detail, focusing on the historical and future warming trends in the region. The assessment incorporates data from observations, reanalyses, and statistically downscaled climate models from the Coupled Model Intercomparison Project Phases 5 and 6. Since the pre-industrial era, the observed average climate in the MENA has warmed by 1.5°C and is on the brink of exceeding 2°C. The reanalysis data suggest that the regional warming over some MENA sub-regions is three times faster than the global average. By the end of the 21st century, the …
Blood Matters: The Hematological Signatures Of Coronavirus Infection, Ayelen Toro, Ana P Arévalo, Marianoel Pereira-Gómez, Agustina Sabater, Eric A Zizzi, Gaston Pascual, Jorge L Pórfido, Ines Achinelli, Rocio Seniuk, Juan Bizzotto, Pablo Sanchis, Alvaro Olivera, Alejandro Leyva, Pilar Moreno, Alicia Costábile, Alvaro Fajardo, Federico Carrión, Martín Fló, Natalia Olivero-Deibe, Fernando Rodriguez, Nicolas Nin, Nicolas Anselmino, Estefania Labanca, Elba Vazquez, Javier Cotignola, Daniel F Alonso, Maria P Valacco, Marcelo Marti, Francesco Gentile, Artem Cherkasov, Martina Crispo, Gonzalo Moratorio, Geraldine Gueron
Blood Matters: The Hematological Signatures Of Coronavirus Infection, Ayelen Toro, Ana P Arévalo, Marianoel Pereira-Gómez, Agustina Sabater, Eric A Zizzi, Gaston Pascual, Jorge L Pórfido, Ines Achinelli, Rocio Seniuk, Juan Bizzotto, Pablo Sanchis, Alvaro Olivera, Alejandro Leyva, Pilar Moreno, Alicia Costábile, Alvaro Fajardo, Federico Carrión, Martín Fló, Natalia Olivero-Deibe, Fernando Rodriguez, Nicolas Nin, Nicolas Anselmino, Estefania Labanca, Elba Vazquez, Javier Cotignola, Daniel F Alonso, Maria P Valacco, Marcelo Marti, Francesco Gentile, Artem Cherkasov, Martina Crispo, Gonzalo Moratorio, Geraldine Gueron
Faculty, Staff and Student Publications
Recent developments have broadened our perception of SARS-CoV-2, indicating its capability to affect the body systemically beyond its initial recognition as a mere respiratory pathogen. However, the pathways of its widespread are not well understood. Employing a dual-modality approach, we integrated findings from a Murine Hepatitis Virus (MHV) infection model with corroborative clinical data to investigate the pervasive reach of Coronaviruses. The novel presence of viral particles within red blood cells (RBCs) was demonstrated via high-resolution transmission electron microscopy, with computational modeling elucidating a potential heme-mediated viral entry mechanism via Spike protein affinity. Our data affirm viral localization in RBCs, …
Severity Of Symptoms As An Independent Predictor Of Poor Outcomes In Patients With Advanced Cancer Presenting To The Emergency Department: Secondary Analysis Of A Prospective Randomized Study, Aiham Qdaisat, Elizabeth Stroh, Cielito Reyes-Gibby, Monica K Wattana, Jayne Viets-Upchurch, Valda D Page, Patrick Chaftari, Ahmed Elsayem
Severity Of Symptoms As An Independent Predictor Of Poor Outcomes In Patients With Advanced Cancer Presenting To The Emergency Department: Secondary Analysis Of A Prospective Randomized Study, Aiham Qdaisat, Elizabeth Stroh, Cielito Reyes-Gibby, Monica K Wattana, Jayne Viets-Upchurch, Valda D Page, Patrick Chaftari, Ahmed Elsayem
Faculty, Staff and Student Publications
Background/Objectives: Patients with advanced cancer often present to the emergency department (ED) with pain and distressing symptoms that are not systematically evaluated. The current study investigated the association of symptom severity with the diagnosis of delirium and short-term survival.
Methods: In this secondary analysis of a prospective randomized study of delirium among advanced cancer patients in the ED, in which symptoms were assessed by the MD Anderson Symptom Inventory (MDASI), we analyzed the distribution of MDASI item scores by 90-day mortality (Kolmogorov-Smirnov), the association of MDASI item scores with short-term mortality (logistic regression models), and the symptoms in …
Focal Deletions Of A Promoter Tether Activate The Irx3 Oncogene In T-Cell Acute Lymphoblastic Leukemia, Sunniyat Rahman, Gianna Bloye, Nadine Farah, Jonas Demeulemeester, Joana R Costa, Rachael Pocock, Adam Turna, Lingyi Wang, Soowah Lee, Adele K Fielding, Juliette Roels, Roman Jaksik, Małgorzata Dawidowska, Pieter Van Vlierberghe, Suzana Hadjur, Jim R Hughes, James O J Davies, Alejandro Gutierrez, Michelle A Kelliher, Peter Van Loo, Mark A Dawson, Marc R Mansour
Focal Deletions Of A Promoter Tether Activate The Irx3 Oncogene In T-Cell Acute Lymphoblastic Leukemia, Sunniyat Rahman, Gianna Bloye, Nadine Farah, Jonas Demeulemeester, Joana R Costa, Rachael Pocock, Adam Turna, Lingyi Wang, Soowah Lee, Adele K Fielding, Juliette Roels, Roman Jaksik, Małgorzata Dawidowska, Pieter Van Vlierberghe, Suzana Hadjur, Jim R Hughes, James O J Davies, Alejandro Gutierrez, Michelle A Kelliher, Peter Van Loo, Mark A Dawson, Marc R Mansour
Faculty, Staff and Student Publications
Oncogenes can be activated in cis through multiple mechanisms including enhancer hijacking events and noncoding mutations that create enhancers or promoters de novo. These paradigms have helped parse somatic variation of noncoding cancer genomes, thereby providing a rationale to identify noncanonical mechanisms of gene activation. Here we describe a novel mechanism of oncogene activation whereby focal copy number loss of an intronic element within the FTO gene leads to aberrant expression of IRX3, an oncogene in T-cell acute lymphoblastic leukemia (T-ALL). Loss of this CTCF-bound element downstream to IRX3 (+224 kb) leads to enhancer hijack of an upstream developmentally active …
The Pharmacogenomic And Immune Landscape Of Snornas In Human Cancers, Runhao Wang, Chengxuan Chen, Yuan Liu, Mei Luo, Jingwen Yang, Lifei Ma, Chunru Lin, Lixia Diao, Leng Han
The Pharmacogenomic And Immune Landscape Of Snornas In Human Cancers, Runhao Wang, Chengxuan Chen, Yuan Liu, Mei Luo, Jingwen Yang, Lifei Ma, Chunru Lin, Lixia Diao, Leng Han
Faculty, Staff and Student Publications
Small nucleolar RNAs (snoRNAs) are a class of non-coding RNAs primarily known for their role in the chemical modification of other RNAs. Recent studies suggested that snoRNAs may play a broader role in anti-cancer treatments such as targeted therapies and immunotherapies. Despite these insights, the comprehensive landscape of snoRNA associations with drug response and immunotherapy outcomes remains unexplored. In this study, we identified 79,448 and 75,185 associations between snoRNAs and drug response using data from VAEN and CancerRxTissue, respectively. Additionally, we discovered 29,199 associations between snoRNAs and immune checkpoint genes and 47,194 associations between snoRNAs and immune cell infiltrations. Sixteen …