Life Sciences Commons^™

Guide To Wetland And Riparian Plant Families Of Pacific Northwest Rangelands, Gabriel E. Campbell, Nora Dunkirk

Institute for Natural Resources Publications

This document contains a quick, non-technical, pictured-based field guide to wetland and riparian plant families of Pacific Northwest rangelands in eastern Oregon, eastern Washington, and northeastern California. It contains approximately 100 taxa including 40 common plant families and 60 common genera and species. The intended audience for this guide includes wetland professionals, restoration practitioners, land managers, botanists, naturalists, and anyone interested in wetland plants.

Beyond Homogeneity: Exploring Causal Heterogeneity In Psychopathology, Philip B. Vinh

Theses and Dissertations

Traditional models in psychiatric research often impose assumptions of causal homogeneity, treating population-level associations as reflective of uniform underlying mechanisms. This dissertation challenges that assumption by introducing statistical and machine learning frameworks designed to detect and model causal heterogeneity in the development of psychopathology. Central to this approach is the advancement of finite mixture structural equation modeling (FM-SEM) to identify latent subgroups characterized by distinct, and sometimes opposing, causal pathways.

The dissertation comprises three integrated empirical studies. The first introduces mixDoC, a finite mixture extension of the classical Direction of Causation (DoC) model applied to twin data, enabling the detection …

Diversification Of Avifauna In The Darién Highland Region: Ecological Niche Modeling, Phylogeography And Morphology To Explore Speciation In The Montane Species Myadestes Coloratus, Chlorospingus Tacarcunae And Margarornis Bellulus., Jorge L. Garzon Vasquez Mrs

Theses and Dissertations

Montane regions in the Neotropics are hotspots of endemism and biodiversity, yet their species are especially vulnerable to the impacts of climate change and geographic isolation. This thesis investigates the evolutionary and ecological dynamics of three bird species endemic to the Darién Highlands of eastern Panama: Myadestes coloratus, Chlorospingus tacarcunae, and Margarornis bellulus. Through an integrative approach combining ecological niche modeling, morphometric analysis, and genomic data from ultraconserved elements (UCEs) and mitochondrial DNA, the study explores the historical biogeography, current distribution patterns, population structure, and phenotypic differentiation of these montane taxa. Ecological niche models revealed that suitable habitat …

Mctr3 Mitigates Cigarette Smoke-Induced Pulmonary Inflammation And Damage, Yu Par Aung Myo

Theses and Dissertations

Smoking is deleterious to our lungs and can precipitate in a multitude of diseases, including chronic obstructive pulmonary disease (COPD). COPD is primarily caused by smoking cigarettes and is a major public health issue. Current therapies only treat symptoms without halting or reversing disease progression, thus highlighting a large unmet need to develop new therapies. We address this gap by investigating maresin conjugate in tissue regeneration 3 (MCTR3) which is a newly discovered specialized pro-resoling mediator (SPM) that has the novel property of promoting tissue repair and regeneration in addition to being anti-inflammatory and pro-resolving. For the first time, we …

Critical Environmental Communication Framework, Shumaila J. Bhatti, Srivi Ramasubramanian, Andrea Feldpausch-Parker, Bruno Takahashi, Silje Kristiansen

Media Studies - All Scholarship

This study develops a Critical Environmental Communication (CEC) framework to assess the landscape of Environmental Communication research and to what extent and in which ways critical and justice-oriented perspectives are included. The CEC framework consists of four interconnected themes: (a) Marginalized Ecocultural Identities, (b) Context and Scale, (c) Power and Agency, and (d) Justice, Equity, Diversity, Access, and Inclusion (JEDAI). Using this framework in a bibliometric analysis examining 1,297 Environmental Communication publications, we assess the occurrence of these themes in the scholarship. Our analysis found that Marginalized Ecocultural Identities, and Context and Scale were most frequently occurring, while Power and …

A Survey Of Nurse Practitioners' And Physician Assistants' Students' Preparedness And Interest In Utilizing Physical Activity In Patient Care, Barrett Snyder

West Chester University Master’s Theses

Despite the well-documented benefits of physical activity (PA) for physical and mental health, as well as its role in preventing chronic disease and reducing mortality, most individuals fall short of meeting recommended PA guidelines. Although medical professionals recognize the value of PA counseling, several barriers, such as limited academic coverage, time constraints, and lack of reimbursement, have hindered its consistent implementation in clinical practice. To address these challenges, initiatives like Exercise is Medicine (EIM) promote integrating PA as a vital sign and encourage interdisciplinary collaboration, including referrals to Clinical Exercise Physiologists (CEPs), to support PA promotion. This evolving approach presents …

Dietary Patterns And Nutrition Education: A Comparison Of Eating Patterns, Physical Activity Levels And Nutrition Education Of Older Adults That Utilize Community Meal Assistance Services In The Community, Teresa A. Ridolfi

Graduate Research Theses & Dissertations

The older adult population is rapidly increasing, with projections indicating that 21% of the general population will be 65 years or older by 2030. This demographic shift is accompanied by a rise in health co-morbidities such as obesity, heart disease, certain types of cancers, and diabetes, which are exacerbated by inadequate nutrition and decreased physical function. This thesis examines dietary patterns, physical activity levels, and nutrition education among older adults utilizing community meal assistance services in Northern Illinois. The study aims to evaluate nutrient intakes, adherence to dietary guidelines, and physical activity levels among this population, using a descriptive epidemiological …

Potentiation Of Gelonin Cytotoxicity By Pulsed Electric Fields, Olga N. Pakhomova, Eleni Zivla, Giedre Silkuniene, Mantas Silkunas, Andrei G. Pakhomov

Bioelectrics Publications

Gelonin is a ribosome-inactivating protein with extreme intracellular toxicity but poor permeation into cells. Targeted disruption of cell membranes to facilitate gelonin entry is explored for cancer and tissue ablation. We demonstrate a hundreds- to thousands-fold enhancement of gelonin cytotoxicity by pulsed electric fields in the T24, U-87, and CT26 cell lines. The effective gelonin concentration to kill 50% of cells (EC₅₀) after electroporation ranged from <1 nM to about 100 nM. For intact cells, the EC₅₀ was unattainable even at the highest gelonin concentration of 1000 nM, which reduced cell survival by only 5–15%. For isoeffective electroporation treatments using 300 ns, 9 µs, and 100 µs pulses, longer pulses were more efficient at lowering gelonin EC₅₀. Increasing the electric field strength of 8, 100 µs pulses from 0.65 to 1.25 kV/cm reduced gelonin EC₅₀ from 128 nM to 0.72 nM. Conversely, the presence of 100 nM gelonin enabled a more than 20-fold reduction in the number of pulses required for equivalent cell killing. Pulsed electric field-mediated delivery of gelonin shows promise for hyperplasia ablation at concentrations sufficiently low to minimize or avoid systemic toxicity.

Instructions For Authors, Discovery Editors

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

What’S In A Name? Anapodophyllon? Podophyllum? It’S Still Mayapple, W. John Hayden

Biology Faculty Publications

No abstract provided.

Characterizing A Rad23 Dependent Ultraviolet Radiation Resistance In Tetrahymena Thermophila, Emma June Liimatta

Graduate Theses/Dissertations

In 2020, 10 million deaths were attributed to cancer, with multidrug resistance being responsible for over 90% of deaths in cancer patients receiving treatment. This study utilized the model organism Tetrahymena thermophila to study how cells become resistant to Ultraviolet Radiation (UV) radiation, a process similar to multidrug resistance, specifically focusing on the nucleotide excision repair and ubiquitin shuttle protein Rad23. The National Cancer Institute documented 30-60% of cancers tested had a mutation in RAD23. Knockdown of RAD23 in Tetrahymena thermophila demonstrated a UV resistance phenotype with decreased nucleotide excision repair and differential expression of proteins active within caspase-independent …

Rice Plants Response To Modulation Of The Erecta Signaling, Yasmin Vasques Berchembrock, Flavia Barbos Silva Botelho, Bhuvan Pathak, Shan Zhao, Vibha Srivastava

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

The ERECTA family of receptors (ERfs), encoding leucine-rich repeat receptor-like kinases (LRR-RLKs), can regulate multiple aspects of plant development and abiotic stress responses. The rice (Oryza sativa) genome contains three ERfs, namely ERECTA 1 (OsER1), ERECTA 2 (OsER2), and ERECTA-LIKE (OsERL). However, there is limited information currently available on their expression pattern during the plant developmental stages. The expression pattern of OsERfs genes at reproductive stages from the booting (R2) to milk (R6) stage in Nipponbare cultivar and the transgenic plants expressing a truncated Arabidopsis ERECTA (ER) lacking the kinase domain (triangle Kinase) were studied. The triangle Kinase functions as …

Ribomoe: An Application Of Mixture Of Experts On Artificial Riboswitch Classification, Hainian Audrey Long

Master's Projects

Urban water sewage is a potential health concern due to its possibility to spread contagious RNA viruses such as Coxsackievirus B3. However, detection of viral particles remains challenging because of low viral concentrations in wastewater and high mutation rates of the RNA virus. To address this, this study proposes a novel viral detection method using synthetic riboswitches that bind to the target virus and trigger a reporter gene, amplifying the detection signals. To support the design of effective riboswitches, we present a machine learning model for classifying riboswitch performance, integrating RNA sequence data with secondary structural features. This model used …

Combining Esm Models With Experimentally Derived Structural Stability To Identify Functional Missense Mutations, Rucha Deo

Master's Projects

Missense mutations can impact protein function and structure, yet their effects on protein function are difficult to predict. In this study, I compared two deep learning models, ESM1v and ESM1b, by evaluating their mutation predictions against experimental structural stability data. ESM1v showed a stronger correlation with experimental structural stability scores compared to ESM1b. A sigmoid curve was fitted to explore this relationship further. Over 100,000 mutations were identified where experimental stability differed significantly from model predictions. Many mutations that remained structurally stable experimentally but were predicted as harmful by the ESM models were frequently found at known functional sites. Structural …

Automated Sponge Segmentation With Mask R-Cnn On Arms Plate Images For Reef Monitoring, Mrunali Abhijit Thokadiwala

Master's Projects

Climate change-driven ocean warming and acidification are disrupting the ecological balance of coral reefs. Notably, these oceanic conditions are undermining coral health and accelerating their decline which is favoring some sponge species in outcompeting them for dominance. Although functional, these altered reefs destabilize the reef architecture, hinder nutrient cycling, and support fewer marine species. Thus, monitoring the growth and abundance of various sponges and understanding their roles at different stages of ecological succession in coral reefs is vital. Autonomous reef monitoring structures (ARMS) are often used for this purpose, but manual taxonomic analysis using their images is time-consuming, inconsistent and …

Spermidine And Polyamine Blockade As Key Mediators Of Intestinal Epithelial Cell Functions, Madison Lynn Flory

Theses and Dissertations--Microbiology, Immunology, and Molecular Genetics

Frequently, alterations in the composition of the gut microbiota and its metabolites are linked with intestinal diseases, including inflammatory bowel disease and colorectal cancer. However, the direct connections between alterations in the microbiome and disease states often remain elusive. Prior research has identified increases in both polyamines, which are a class of microbial metabolite, and in the abundance of bacteria that can produce polyamines, in a murine colorectal cancer model. Understanding the significance of the interaction between these microbial metabolites and intestinal epithelial cells (IECs) will provide new and expanded evidence of the importance of the gut microbiome in colorectal …

International Society Of Sports Nutrition Position Stand: Nutritional Concerns Of The Female Athlete, Ralf Jäger, Jeffery L. Heileson, Sidney Abou Sawan, Broderick L. Dickerson, Megan Leonard, Richard B. Kreider, Chad M. Kerksick, Stephen M. Cornish, Darren G. Candow, Dean M. Cordingley, Scott C. Forbes, Grant M. Tinsley, Tindaro Bongiovanni, Roberto Cannataro, Bill I. Campbell, Shawn M. Arent Ph.D., Cscs*D, Fissn, Facsm, Fnak, Jeffrey R. Stout, Douglas S. Kalman, Jose Antonio

Faculty Publications

Position Statement: The International Society of Sports Nutrition (ISSN) presents this position based on a critical examination of the literature surrounding the effects of long-chain omega-3 polyunsaturated fatty acid (ω-3 PUFA) supplementation on exercise performance, recovery, and brain health. This position stand is intended to provide a scientific foundation for athletes, dietitians, trainers, and other practitioners regarding the effects of supplemental ω-3 PUFA in healthy and athletic populations. The following conclusions represent the official position of the ISSN: Athletes may be at a higher risk for ω-3 PUFA insufficiency. Diets rich in ω-3 PUFA, including supplements, are effective strategies for …

Common Questions And Misconceptions About Energy Drinks: What Does The Scientific Evidence Really Show?, Jose Antonio, Brandi Antonio, Shawn M. Arent Ph.D., Cscs*D, Fissn, Facsm, Fnak, Darren G. Candow, Guillermo Escalante, Cassandra Evans, Scott Forbes, David Fukuda, Maureen Gibbons, Patrick Harty, Andrew R. Jagim, Douglas S. Kalman, Chad M. Kerksick, Jennifer A. Kurtz, Joseph Lillis, Lonnie Lowery, Gianna F. Mastrofini, Scotty Mills, Michael Nelson, Flavia Pereira, Justin Roberts, Michael Sagner, Jeffrey Stout, Jaime Tartar, Adam Wells

Faculty Publications

Energy drinks are a commonly consumed beverage, and studies suggest a possible performance-enhancing effect. A Google Scholar search using the keywords “energy drinks” and “exercise” yields numerous results, underscoring the voluminous research on this topic. However, there are questions regarding the effectiveness and safety of energy drinks. These questions include, but are not limited to: (1) What are the main active ingredients in energy drinks? (2) Do energy drinks assist in weight management? (3) Do energy drinks enhance aerobic performance? (4) Do energy drinks enhance athletic speed? (5) Do energy drinks improve reaction time? (6) Do energy drinks enhance lean …

International Society Of Sports Nutrition Position Stand: Long-Chain Omega-3 Polyunsaturated Fatty Acids, Ralf Jäger, Jeffrey L. Heilson, Sidney Abou Sawan, Broderick L. Dickerson, Megan Leonard, Richard B. Kreider, Chad M. Kerksick, Stephen M. Cornish, Darren G. Candow, Dean M. Cordingley, Scott C. Forbes, Grant M. Tinsley, Tindaro Bongiovanni, Roberto Cannataro, Bill I. Campbell, Shawn M. Arent, Jeffrey R. Stout, Douglas S. Kalman, Jose Antonio

Faculty Scholarship

Position Statement: The International Society of Sports Nutrition (ISSN) presents this position based on a critical examination of the literature surrounding the effects of long-chain omega-3 polyunsaturated fatty acid (ω-3 PUFA) supplementation on exercise performance, recovery, and brain health. This position stand is intended to provide a scientific foundation for athletes, dietitians, trainers, and other practitioners regarding the effects of supplemental ω-3 PUFA in healthy and athletic populations. The following conclusions represent the official position of the ISSN:

1. Athletes may be at a higher risk for ω-3 PUFA insufficiency.

2. Diets rich in ω-3 PUFA, including supplements, are effective strategies …

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Synthesis, Characterization, And Biological Activity Of Ni(Ii) And Co(Iii) Thiosemicarbazone Complexes As Potential Anticancer Agents, Jack Martin

Pitzer Senior Theses

The mechanics by which Reactive Oxygen Species work is an area of great interest given ROS’s wide range of biological applications. From cell signaling and mitochondrial regulation to pathogenesis and tumor cell death, varying concentrations of ROS in a system can lead to a whole host of positive and negative effects. In a similar vein, thiosemicarbazones are known to be equally useful for their myriad of antibacterial, antifungal, antiviral, and antitumoral effects. They have been at the core of the pharmaceutical world or the better part of the last century. The purpose of this work is to synthesize, characterize and …

Verification Of Real-Time Smoke Simulations: A Case Study On Early Summer North American Wildfire Events, Daniel Bonilla

Pitzer Senior Theses

As wildfire intensity and frequency escalate in times of unprecedented climate change and severe droughts, it is important to enhance forecasting models that accurately and efficiently predict wildfire smoke movement. NOAA’s experimental Rapid-Refresh Forecasting System with Smoke and Dust (RRFS-SD) aims to improve upon the High-Resolution Rapid Refresh- Smoke (HRRR-Smoke), by extending the domain to include all of North America and incorporating new developments in physics and wildfire parameterizations. Our work explores the process of adding satellite Aerosol Optical Depth (AOD) data, through AERONET, as an additional method of verification of the RRFS-SD experimental model. Using a case study on …

Optimizing Decision-Making In A Cerebral Palsy Model Using Reinforcement Learning, Richard Ampah

Pitzer Senior Theses

This study presents an original interdisciplinary investigation into how reinforcement learning (RL) can model motor and cognitive defects and potentially improve motor and cognitive functions in individuals with cerebral palsy (CP), a non-progressive neurological disorder that impairs movement and adaptability. Integrating computational neuroscience and machine learning, the research applies policy gradient methods and Markov Decision Processes (MDPs) to simulate adaptive learning in agents with and without CP-related constraints.

The central aim is to compare the cumulative rewards of optimal policies, derived from value iteration, and human-like learning policies using the REINFORCE algorithm, both with and without the Bellman baseline. The …

The Chesapeake Pearl: A Proposal For An Environmental Public Art Installation, Samuel I. Reichard

Pitzer Senior Theses

In this thesis, I lay the foundation for an environmental art project along Chesapeake Bay. It includes an analysis of relevant literature and case studies, as well as a proposal for the project. The Chesapeake Pearl (working title) would be a 20-foot spherical aquarium that will visually display the water filtration capacity of eastern oysters and native seagrass, aiming to inspire curiosity around these organisms and the greater Chesapeake Bay ecosystem. The project exists at the intersection of environmental art and environmental education and seeks to promote learning and public engagement through visually demonstrating a scientific process, the water filtration …

Visions Of The Garden: Transforming The Former Claremont Golf Course Into The Coastal Sage Mosaic, Ella C. Kim

Pitzer Senior Theses

A thirty-three-acre parcel of land sits at the foothills of the San Gabriel Mountains at a vulnerable wildland-urban interface (WUI), raising key ecological concerns. This parcel, a former golf course, is the focused site for this conceptual landscape and restoration plan. The now-neglected site has no proposed plans for restoration or development yet holds significant potential for transformation. Stakeholders’ conflicting visions range from land preservation, ecological restoration, Indigenous land rights, commodification for revenue and development, and prioritizing the needs of the natural environment in coexistence with modern human enjoyment. The conceptual plan addresses these critical considerations in verbal and visual …

Characterization Of A Highly Arsenic-Resistant Microbe, Eleanor E. Windholz

Honors Theses

Heavy metal pollution in our terrestrial and aquatic ecosystems is a major global concern, as chronic exposure to heavy metals such as arsenic and chromium has dire effects on mammalian health. In these polluted, arsenic-rich environments, microorganisms resistant to heavy metals have been isolated. The microbe isolated in this paper was resistant to As(V) up to 1100 mM, which is significantly higher than most published strains, and resistant to Cr(VI) at concentrations up to 5 mM. The microbe was tentatively identified as Micrococcus luteus, but its high arsenic resistance suggests it may be a novel strain. The ability of the …

An Apple A Day: Have The Growing Conditions Of Apples In Maine Changed Over The Past 20 Years, Anooshka Sethi

Honors Theses

Climate change is increasingly affecting the growing conditions that farmers face. This study focused on if and how the growing conditions of apples have changed over the past two decades. Apples are an economically, socially, and culturally important crop to Maine's agriculture landscape. By production acreage, Maine is the second largest state in New England, with 2700 acres of land used to grow apples (USDA NASS CoA, 2022). A unique characteristic of agricultural production in Maine is that most farms are small-scale, run by families or small groups, making adverse changes to the growing conditions of a major crop in …

Effects Of Direct And Indirect Predator Cue Intensity On Foraging Decisions In A Deer Mouse, Peromyscus, Nicholas G. Levinson

Honors Theses

Ecologists developed optimal foraging theory as a framework to understand how an animal may spend minimal time to maximize resource intake. A giving-up density (GUD) is a metric of the density of remaining food in a food patch at which an animal decides foraging is no longer economical. This study aims to test how the intensity of direct and indirect predator cues alter foraging patterns of deer mice. To measure GUD, I used depletable food patches deployed in the “upper woods” on the periphery of Colby College. To simulate direct predator cues, 1 mL of fox urine was applied on …

Ai-Infused Discussion Boards: Enhancing Engagement, Reflection, And Academic Integrity In Anatomy And Physiology Education, Wade Dauberman

Teaching Repository of AI-Infused Learning

This paper presents the design, implementation, and evaluation of an AI-infused discussion board assignment that promotes ethical AI engagement, enhances student learning in anatomy and physiology, and addresses academic integrity concerns in higher education.

Investigation Of Hydrogen Gas Production And Motility In Δselab And Δfdhf Mutants Of Clostridioides Difficile, Ria D. Gupta

Honors Undergraduate Theses

Clostridioides difficile is a Gram-positive, spore-forming, anaerobic bacterium and the leading cause of antibiotic-associated diarrhea worldwide. During infection, antibiotic-induced disruption of the gut microbiota allows C. difficile to colonize and proliferate. Motility, enabled by flagella, is an important factor in colonization and may be influenced by metabolic activity. Recent experiments have observed gas production during C. difficile motility assays, but the biochemical basis of this phenomenon remains unknown. Because gas formation in other bacteria such as E. coli involves the formate hydrogenlyase complex and the enzyme formate dehydrogenase (FDH), we hypothesize that C. difficile gas production under motility conditions is …

Lifetime History Of Concussions In Relation To Blind Perceptual Distance Estimation Ability, Mackenzie K. Miller

Honors Undergraduate Theses

This study examined the relationship between visuospatial estimation and a lifetime history of concussions. Current literature on concussions investigates visuospatial working memory and estimation ability separately, but not conjointly. In order to examine this relationship, a novel neuropsychological task was designed to measure visuospatial estimation ability in working memory, named the Perceptual Estimation Test (PET). This novel task was designed with three variations that would increase in complexity as they progressed, and each variation would include three trials. Participants were scored on their accuracy performance during the PET. Participants aged 18-25 were recruited from students attending the University of Central …