Life Sciences Commons^™

Classification Of Non-Tcga Cancer Samples To Tcga Molecular Subtypes Using Compact Feature Sets, Kyle Ellrott, Christopher K Wong, Christina Yau, Mauro A A Castro, Jordan A Lee, Brian J Karlberg, Jasleen K Grewal, Vincenzo Lagani, Bahar Tercan, Verena Friedl, Toshinori Hinoue, Vladislav Uzunangelov, Lindsay Westlake, Xavier Loinaz, Ina Felau, Peggy I Wang, Anab Kemal, Samantha J Caesar-Johnson, Ilya Shmulevich, Alexander J Lazar, Ioannis Tsamardinos, Katherine A Hoadley, Cancer Genome Atlas Analysis Network, A Gordon Robertson, Theo A Knijnenburg, Christopher C Benz, Joshua M Stuart, Jean C Zenklusen, Andrew D Cherniack, Peter W Laird

Faculty, Staff and Student Publications

Molecular subtypes, such as defined by The Cancer Genome Atlas (TCGA), delineate a cancer's underlying biology, bringing hope to inform a patient's prognosis and treatment plan. However, most approaches used in the discovery of subtypes are not suitable for assigning subtype labels to new cancer specimens from other studies or clinical trials. Here, we address this barrier by applying five different machine learning approaches to multi-omic data from 8,791 TCGA tumor samples comprising 106 subtypes from 26 different cancer cohorts to build models based upon small numbers of features that can classify new samples into previously defined TCGA molecular subtypes-a …

Sex And Outcomes Of Patients With Microsatellite Instability-High And Braf V600e Mutated Metastatic Colorectal Cancer Receiving Immune Checkpoint Inhibitors, Vincenzo Nasca, Joseph Zhao, Javier Ros, Sara Lonardi, Koen Zwart, Romain Cohen, Marwan Fakih, Priya Jayachandran, Jeanine M L Roodhart, Jeroen Derksen, Rossana Intini, Francesca Bergamo, Giacomo Mazzoli, Filippo Ghelardi, Marta Ligero, Jitendra Jonnagaddala, Nicholas Hawkins, Robyn L Ward, Durgesh Wankhede, Hermann Brenner, Michael Hoffmeister, Marco Vitellaro, Lisa Salvatore, Claire Gallois, Pierre Laurent-Puig, Chiara Cremolini, Michael J Overman, Julien Taieb, David Tougeron, Thierry Andre, Jakob Nikolas Kather, Raghav Sundar, Javier Carmona, Elena Elez, Miriam Koopman, Filippo Pietrantonio

Faculty, Staff and Student Publications

Background: Immune checkpoint inhibitors (ICIs) are the gold standard therapy in patients with deficient mismatch repair (dMMR)/microsatellite instability-high (MSI-H) metastatic colorectal cancer (mCRC). A significant proportion of patients show resistance, making the identification of determinants of response crucial. Growing evidence supports the role of sex in determining susceptibility to anticancer therapies, but data is lacking for patients with MSI-H CRC.

Methods: In this real-world cohort comprising 624 patients with MSI-H mCRC receiving ICIs, we investigated the impact of sex on patients' outcomes, overall and according to RAS-BRAF mutational status or type of treatment (anti-PD-(L)1 with or without anti-CTLA-4 agents). We …

Prospects For Enriching A Balanced Diet Of Fish Using Proteins And Enzymes From The Fungus Aspergillus Oryzae, Khusan N. Niyozov, Kuchkor O. Dodaev, Zakhro R. Akhmedova, Munavvar A. Yakhyayeva

CHEMISTRY AND CHEMICAL ENGINEERING

The aim of the work is to create a technology for producing protein-rich compound feed that improves digestion processes and enriches the composition of balanced fish feed. The prospects for enriching a balanced fish diet are achieved by using proteins and enzymes of Aspergillus Oryzae fungi. The fungi produced an enzyme preparation containing protease, α-amylase. The preparation was tested for converting locally produced fish feed with an increased carbohydrate content of up to 77%, respectively, with a reduced protein content of 14.5-16.5%, while creating, for example, a favorable pH value. It was found that the activity of the α-amylase enzyme, …

Atsubp-2.0: An Integrated Web Server For The Annotation Of Arabidopsis Proteome Subcellular Localization Using Deep Learning, Naveen Duhan, Rakesh Kaundal

Plants, Soils and Climate Student Research

The organization of subcellular components in a cell is critical for its function and studying cellular processes, protein–protein interactions, identifying potential drug targets, network analysis, and other systems biology mechanisms. Determining protein localization experimentally is time-consuming and expensive. Due to the need for meticulous experimentation, validation, and data analysis, computational methods provide a quick and accurate alternative. Arabidopsis thaliana, a beneficial model organism in plant biology, facilitates experimentation and applies to other plants. Predicting its proteins' subcellular localization can improve our understanding of cellular processes and have applications in crop improvement and biotechnology. We propose AtSubP-2.0, an extension of …

Life History, Reproductive, And Demographic Parameters For Bottlenose Dolphins (Tursiops Truncatus) In Sarasota Bay, Florida, Randall S. Wells, Aleta A. Hohn, Michael D. Scott, Jay C. Sweeney, Forrest I. Townsend, Jason B. Allen, Aaron A. Barleycorn, Katherine A. Mchugh, Kim Bassos-Hull, Gretchen N. Lovewell, Deborah A. Duffield, Cynthia R. Smith, A. Blair Irvine

Biology Faculty Publications and Presentations

Studies of the resident community of bottlenose dolphins (Tursiops truncatus) of Sarasota Bay, Florida, have been conducted for more than 50 years. Detailed histories have been collected for resident individuals through integrated observations, systematic photographic identification surveys, tagging and tracking, catch-and-release health assessments, remote biopsy sampling, and stranding response. This has produced a unique dataset documenting life history milestones and vital rates of a small cetacean. Analyses of data from 482 resident Sarasota Bay dolphins have revealed estimated maximum life spans of 67 years for females and 52 years for males. For females, predicted age at sexual maturation …

Exploring The Connection Between Rna Splicing And Intellectual Disability, Anthony Caputo, Ashleigh E. Schaffer

Faculty Scholarship

Intellectual disability (ID) is a broad diagnostic category that encompasses individuals with impaired cognitive ability. While these disorders have heterogeneous causes, recent developments in next-generation sequencing (NGS) are revealing the prevalence of genetic etiologies. In particular, germline mutations in genes that affect RNA splicing are increasingly common causes of ID disorders. Research to elucidate the functional relationship between splicing and neurodevelopment is critical since molecular therapeutics require a nuanced understanding of the pathological mechanism. In this review, we first summarize the trends that have led to the discovery of the RNA splicing–ID relationship, then discuss recent progress and future directions …

Probing The Stability Of Designed Protein, Axel Irianni, Shuvo Chakraborty, Maral Afshinpour

SDSU Data Science Symposium

Naturally occurring proteins have evolved to perform specific biochemical functions, and their amino acid sequences are optimized for those functions rather than for stability. Enhancing protein stability without compromising its function is highly desirable for biotechnological applications, such as vaccine design. Computational protein design algorithms offer a solution by making targeted amino acid changes to the native protein sequence, potentially enhancing stability without the need for the lengthy, labor-intensive, and costly experimental processes typically involved in stabilizing proteins. There are various categories of computational protein design algorithms, and it remains unclear which approach is the most effective. In this study, …

Filters For Forecasting Crop Health: Analyzing And Projecting The Temporal Evolution Of Landsat Ndvi Data Using Dynamic Linear Models And The Kalman Filter, Kamal Albousafi, Hossein Moradi, Jung-Han Kimn

SDSU Data Science Symposium

Accurately forecasting food availability is a critical task. One approach involves utilizing remote sensing data, such as satellite images, to observe the health of crop fields using different Vegetation Indices (VI). The Normalized Difference Vegetation Index (NDVI) provides a sound metric to track the “greenness” of crops over time. In this research, we develop statistical models that capture the dynamics of NDVI time series data to make better predictions of its future values. The median NDVI of the pixels of a farm located in Edmunds County, South Dakota, is obtained using imagery from the Landsat 5 and Landsat 8 satellites, …

Equipping Exercise Science Students With Motivational Interviewing Skills For Real-World Client Interactions, Jessica A. Albers

Educational Practices in Kinesiology

Motivational Interviewing (MI) is a widely recognized communication technique originally developed to treat addictive behaviors. Its application has expanded to various health domains, including exercise science, where it is used to enhance client motivation and adherence to health behaviors. However, despite its proven efficacy, exercise science students often struggle to see the relevance of MI to their future careers, particularly outside of roles focused on health coaching. This teaching and learning resource aims to bridge the gap between MI theory and its practical application for exercise science students. This resource aims to equip students with the communication tools necessary for …

Artificial Intelligence (Ai) In Pharmacy, Giang Nguyen, Elizabeth Sartschev, John Reyes, Allie Honigford, Marisa Petrunich, Kiley Devoll, Brianna Lu, Joshua Honaker, T'Bony M. Jewell

Pharmacy and Wellness Review

Artificial Intelligence (AI) has transformed the pharmaceutical field by enabling computer software systems to learn and perform human behavior. Specifically, AI has revolutionized chronic diabetes management through continuous glucose monitoring, showcasing its immense potential in healthcare. However, alongside its transformative impact, AI’s increasing role in healthcare has prompted concerns over privacy and its premature integration. Despite these challenges, AI offers limitless opportunities to improve medication management and treatment regimens, driving advancements across various domains. From improving CT imaging to enhancing adenoma detection in colonoscopies and facilitating medication adherence, AI’s impact on healthcare is profound. Furthermore, AI plays a pivotal role …

Exploring The Incidence Of Synthetic Versus Non-Synthetic Cannabinoid-Induced Psychosis: A Scoping Review, Ruaa Al-Juboori, Zachariah Francois, Precious Patrick Edet, Marie Barnard

Faculty and Student Publications

Cannabinoids, including synthetic and non-synthetic variants, are associated with diverse mental health outcomes including the development of psychotic symptoms. While non-synthetic cannabinoids such as THC are well-studied, the stronger affinity of synthetic cannabinoids for cannabinoid receptors may lead to more severe and unpredictable health outcomes, including acute psychosis. Therefore, the objective of this scoping review is to investigate if the literature reported differences in the incidence of synthetic cannabinoid-induced psychosis versus non-synthetic cannabinoid-induced psychosis and quantify these differences if present. Following the JBI guidelines for scoping reviews, we will conduct a literature search across multiple databases including PubMed, PsycINFO, Scopus, …

Corn Tolerance To Florpyrauxifen-Benzyl Rates And Its Mixture With Atrazine And Mesotrione, Amar Godar, Jason K. Norsworthy, L. Tom Barber

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Florpyrauxifen-benzyl is a new synthetic auxin herbicide labeled in rice with a broad spectrum of control, typically more potent on broadleaf weeds. It has garnered some interest as a potential broadleaf weed control option for use in corn at low rates. Field experiments were conducted in Fayetteville, Arkansas, from 2019 through 2021 to examine the response of corn to postemergence applications of florpyrauxifen-benzyl at three rates (7.5, 15, and 30 g ae ha-1), as well as mixtures of the herbicide with atrazine (at half or full rate), mesotrione, or a combination of atrazine (at half rate) and mesotrione. Injury and …

Inclusive Space For Everyone Door Sign (Printable 8.5 X 11 Inch), Joan H. Robinson

Open Educational Resources

This is a printable 8.5 x 11 inch door sign for faculty, staff, and administrators to let people know it is an inclusive space for everyone. For improved visibility, print with a color printer and cut along the dotted line.

See also: 11 x 17 inch door sign.

Understanding The Relationship Between Nutrition Knowledge And Factors Influencing Food Choices: A Cross-Sectional Study, Kirsten Ann Blatchford

Doctoral Dissertations and Projects

Nutrition knowledge plays an important role in addressing the prevalence of nutrition-related diseases among college students. Along with nutrition knowledge levels, there are a variety of factors that shape how college students make their food choices each day. The purpose of this quantitative, cross-sectional study was to explore the relationship between nutrition knowledge and factors influencing food choices among 267 college students at Liberty University. College students are a vital target population as their newfound autonomy can shape dietary habits long-term. Nutrition knowledge levels and food choice factors of Liberty University undergraduate students were evaluated using an electronic questionnaire. The …

Meditation Or Medication: Comparing Meditation To Phosphatidylserine In The Reduction Of Salivary Cortisol In Collegiate Tennis Players Post Exercise, Elizabeth Ann Novian Hughes

Doctoral Dissertations and Projects

Phosphatidylserine (PS) is a glycerophospholipid made in the body that is a part of the cell membrane (Carter & Greenwood, 2015; McArdle et al., 2019). PS reduces cortisol levels in the body (McArdle et al., 2019). Meditation is a “consistent self-care practice…that allows for developing loving awareness of current thoughts and feelings” (Valluri et al., 2024. Definition section, para. 1). Sadimi et al. (2021) used mindfulness meditation and found cortisol reductions were high. Meditation (MED) has not been compared to PS in reducing cortisol. Cortisol is increased in the body in response to the reception of stress input, such as …

A Mechanistic Exploration Of How Neighborhood Crime Exposure Relates To Neonatal Brain Function, Early Externalizing Behaviors, And Callous-Unemotional Traits, Rebecca Brady

Arts & Sciences Graduate Student Theses and Dissertations

Pregnancy through early childhood is a period of tremendous neural and behavioral development. Neuronal birth and migration occur prenatally and result in the formation of neonatal functional and structural networks. These early brain networks are a building block for postnatal development wherein infants rapidly learn a variety of new skills, including socioemotional skills such as emotion regulation and moral understanding. During the acquisition of these skills, even typically developing toddlers can act aggressively or impulsively; however, toddlers with high levels of externalizing behaviors are more likely to develop clinical externalizing disorders later in childhood and adolescence. As such, it is …

Environmental Release Of A Safener Fenclorim From Rice (Oryza Sativa L.) Following Seed Treatment, Jeong-In R. Hwang, Jason K. Norsworthy, Nanda Kumar, Tae-Hwa Kim

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

The safener fenclorim, effective in protecting rice (Oryza sativa L.) from the phytotoxicity of some herbicides, is regarded as a contaminant of emerging concern that may cause toxicological issues to ecosystems and humans who may consume the final harvested rice. This study investigated time-dependent environmental releases of fenclorim from rice seeds treated with the safener and insecticide with five different treatments. The treatment with fenclorim alone caused the greatest fenclorim releases from the seed, and the release magnitude was similar to the treatment that had fenclorim and insecticide in mixture. The fenclorim release was the least when treated with safener …

Understanding The Relationship Between Food And Connection To God, Angela M. Hall

Doctoral Dissertations and Projects

A person’s relationship with God is a personal one, as is the choice of the food we eat. Today we see more and more people struggle with unhealthy relationships with food. And our relationship with food affects more than just our physical health. Food and diet can play a role in how we hear from God. The present qualitative study aimed to understand the relationship between food and connection to God. Specifically, this study aimed to explain lived experiences with food and if diet affected connection to God. A total of twelve Christian, adult men and women participated in 1:1 …

Therapeutic Targeting Of The Janus Kinase/Signal Transducer And Activator Of Transcription Pathway In Cutaneous T-Cell Lymphoma, Alisha Kashyap, Julia Dai, Xiao Ni

Faculty, Staff and Student Publications

Background/Objectives: Cutaneous T-cell lymphoma (CTCL) is a rare group of non-Hodgkin lymphomas characterized by the clonal expansion of malignant T cells. While current treatments can alleviate symptoms and significant progress has been made in treating leukemic CTCL, a definitive cure remains elusive. Dysregulation of the Janus kinase/signal transducer and activator of transcription (JAK/STAT) signaling pathway is a key driver of CTCL pathogenesis. As a result, therapeutic strategies targeting JAK/STAT signaling have gained momentum, with the increasing use of JAK inhibitors and other agents that effectively suppress this pathway. These immune-modulating therapies have broad effects on physiological processes, inflammation, and …

Additional Geographic Records Of Dekay’S Brownsnake (Storeria Dekayi) In Nebraska, Including A Late Seasonal Observation And Likely Range Expansion, Lauren Bahe, Dan D. Fogell, Keith Geluso

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Dekay’s Brownsnake (Storeria dekayi) occurs across much of eastern North America, inhabiting diverse environments such as marshes, woodlands, woodland edges, and urban areas. In Nebraska, recent studies documented its presence beyond the extreme southeastern region of the state, indicating a potential range expansion to the west and north. Our study continues to update its distribution with four additional county records. Two counties, Franklin and Harlan, represent the farthest west observations for Dekay’s Brownsnake in the state, further indicating a likely westward expansion. An observation from 6 December 2023 also represents the latest seasonal observation in the state. Despite …

Strength And Durability Characteristics Of Mortar Containing Fine Glass Powders As Partial Substitute Of Cement, Deepa Paul, Bindhu K.R, G. M. Sadiqul Islam, Bindhu K. R.

ASEAN Journal on Science and Technology for Development

A recent trend in construction involves the application of high-strength mortar which consumes a high quantity of cement. The present study aims at producing a sustainable mortar utilising waste glass powders (GP) as a partial substitute for cement in mortar. GP grains having different particle sizes in equal proportions were carried out in the mortar mix for improved packing. After realising the cementing properties of GP particles from the microanalyses like micron-size, silica-rich, reactive, and thermal resistance, mechanical and durability aspects of the mortar composite with manufactured sand as a fine aggregate were examined. The mechanical properties of the mortar …

Comprehensive Sumo Proteomic Analyses Identify Hiv Latency-Associated Proteins In Microglia., Fergan Imbert, Dianne Langford

Rowan-Virtua School of Osteopathic Medicine Departmental Research

SUMOylation, the post-translational modification of proteins by small ubiquitin-like modifiers, plays a critical role in regulating various cellular processes, including innate immunity. This modification is essential for modulating immune responses and influencing signaling pathways that govern the activation and function of immune cells. Recent studies suggest that SUMOylation also contributes to the pathophysiology of central nervous system (CNS) viral infections, where it contributes to the host response and viral replication dynamics. Here, we explore the multifaceted role of SUMOylation in innate immune signaling and its implications for viral infections within the CNS. Notably, we present novel proteomic analyses aimed at …

Trichromacy Is Insufficient For Mate Detection In A Mimetic Butterfly, Andrew Dang, Gary D. Bernard, Furong Yuan, Aide Macias-Muñoz, Ryan I. Hill, J. P. Lawrence, Aline Giselle Rangel Olguin, Armando Luis-Martínez, Sean P. Mullen, Jorge Llorente-Bousquets, Adriana D. Briscoe

Pacific Faculty Work

Color vision is thought to play a key role in the evolution of animal coloration, while achromatic vision is rarely considered as a mechanism for species recognition. Here we test the hypothesis that brightness vision rather than color vision helps Adelpha fessonia butterflies identify potential mates while their co-mimetic wing coloration is indiscriminable to avian predators. We examine the trichromatic visual system of A. fessonia and characterize its photoreceptors using RNA-seq, eyeshine, epi-microspectrophotometry, and optophysiology. We model the discriminability of its wing color patches in relation to those of its co-mimic, A. basiloides, through A. fessonia and avian eyes. Visual …

Winter Hay-Feeding Effects On Soil Properties In A Rotationally Grazed Pasture System In The Ozark Highlands, Larry Berry, Kristofor R. Brye, Andrew Sharpley, Ron Morrow, Dirk Phillip, Tim A. Glover, James M. Burke, Mike B. Daniels

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Soil nutrient management for pastures in Arkansas often ignores nutrients applied from feeding hay to cattle. Discounting nutrient contributions from hay may increase the likelihood of unnecessary fertilizer over-application. This study evaluated the effects of unrolling bales (unroll fed, UF) and using a ring feeder (ring fed, RF), compared to an unamended control, on changes in soil properties in the top 4 inches in a rotationally grazed, beef [red angus (Bos taurus)] pasture on silt-loam soils in northwest Arkansas. Forty-six cow-calf pairs were fed hay at 6.6 tons acre(-1) year(-1) (14.8 Mg ha(-1) year(-1); dry-weight basis) from December to February …

Starting Vegetable Seeds Indoors: Ii. Materials, Wesley Crump, Taun Beddes, Michael Caron, Milena Oliveira

All Current Publications

This second of four fact sheets in this series explores materials needed to start seeds indoors—specifically, seeds, containers, soilless mix (potting soil), lights, water, fertilizer, a heat source, fans, labels, and a general growing space. Our focus is mainly starting vegetables. However, the principles discussed apply to starting herbs and other ornamental annuals and perennials. Online propagation protocols, books on plant propagation, and other Utah State University (USU) Extension resources discuss how to start other unique and less common plants.

Starting Vegetable Seeds Indoors: I. Planning, Wesley Crump, Taun Beddes, Michael Caron, Milena Oliveira

All Current Publications

For many Utah gardeners, starting vegetable seeds indoors offers both an exciting opportunity to experiment with new varieties and a practical necessity for ensuring the successful growth and production of certain crops in their unique environmental conditions. Vegetable gardening involves inherent risks, particularly for the plants, with weather being a significant and largely uncontrollable factor. Because of this, many gardeners are unsure about when to start certain crops and whether the crops should be started indoors or sown directly in the garden. This fact sheet, the first in a series of four, discusses planning considerations when starting seeds indoors.

Same Data, Different Analysts: Variation In Effect Sizes Due To Analytical Decisions In Ecology And Evolutionary Biology, Elliot Gould, Hannah S. Fraser, Timothy H. Parker, Shinichi Nakagawa, Simon C. Griffith, Peter A. Vesk, Fiona Fidler, Daniel G. Hamilton, Robin N. Abbey-Lee, Jessica K. Abbott, Erica F. Stuber, Et Al.

Wildland Resources Faculty Publications

Although variation in effect sizes and predicted values among studies of similar phenomena is inevitable, such variation far exceeds what might be produced by sampling error alone. One possible explanation for variation among results is differences among researchers in the decisions they make regarding statistical analyses. A growing array of studies has explored this analytical variability in different fields and has found substantial variability among results despite analysts having the same data and research question. Many of these studies have been in the social sciences, but one small “many analyst” study found similar variability in ecology. We expanded the scope …

Genomic And Phenotypic Correlates Of Mosaic Loss Of Chromosome Y In Blood, Yasminka A Jakubek, Xiaolong Ma, Adrienne M Stilp, Fulong Yu, Jason Bacon, Justin W Wong, Francois Aguet, Kristin Ardlie, Donna K Arnett, Kathleen Barnes, Joshua C Bis, Tom Blackwell, Lewis C Becker, Eric Boerwinkle, Russell P Bowler, Matthew J Budoff, April P Carson, Jiawen Chen, Michael H Cho, Josef Coresh, Nancy J Cox, Paul S De Vries, Dawn L Demeo, David W Fardo, Myriam Fornage, Xiuqing Guo, Michael E Hall, Nancy Heard-Costa, Bertha Hidalgo, Marguerite Ryan Irvin, Andrew D Johnson, Eric Jorgenson, Eimear E Kenny, Michael D Kessler, Daniel Levy, Yun Li, Joao A C Lima, Yongmei Liu, Adam E Locke, Ruth J F Loos, Mitchell J Machiela, Rasika A Mathias, Braxton D Mitchell, Joanne M Murabito, Josyf C Mychaleckyj, Kari E North, Peter Orchard, Stephen C J Parker, Yash Pershad, Patricia A Peyser, Katherine A Pratte, Bruce M Psaty, Laura M Raffield, Susan Redline, Stephen S Rich, Jerome I Rotter, Sanjiv J Shah, Jennifer A Smith, Aaron P Smith, Albert Smith, Margaret A Taub, Hemant K Tiwari, Russell Tracy, Bjoernar Tuftin, Alexander G Bick, Vijay G Sankaran, Alexander P Reiner, Paul Scheet, Paul L Auer

Faculty, Staff and Student Publications

Mosaic loss of Y (mLOY) is the most common somatic chromosomal alteration detected in human blood. The presence of mLOY is associated with altered blood cell counts and increased risk of Alzheimer disease, solid tumors, and other age-related diseases. We sought to gain a better understanding of genetic drivers and associated phenotypes of mLOY through analyses of whole-genome sequencing (WGS) of a large set of genetically diverse males from the Trans-Omics for Precision Medicine (TOPMed) program. We show that haplotype-based calling methods can be used with WGS data to successfully identify mLOY events. This approach enabled us to identify differences …

Examination Of Protective Mucosal Immune Responses To Viral Sexually Transmitted Infections, Aisha Lee

Arts & Sciences Graduate Student Theses and Dissertations

Sexually transmitted infections (STI) are a prominent global health issue that affect the sexual and reproductive health of billions worldwide. Viral STIs present a particular challenge due to limited availability of treatment options and their frequent establishment of lifelong infection. One of the most common viral STIs is genital herpes, a recurrent ulcerative disease caused by chronic infection with the human alphaherpesviruses, HSV-1 or HSV-2. Women are particularly susceptible to morbidities of infection ranging from increased risk of HIV-1 acquisition to vertical transfer to neonates, for whom infection can be fatal. Previous efforts to develop a prophylactic vaccine for genital …

Same Data, Different Analysts: Variation In Effect Sizes Due To Analytical Decisions In Ecology And Evolutionary Biology, Elliot Gould, Hannah S. Fraser, Timothy H. Parker, Shinichi Nakagawa, Simon C. Griffith, Peter A. Vesk, Fiona Fidler, Daniel G. Hamilton, Robin N. Abbey-Lee, Andrea Contina

School of Integrative Biological & Chemical Sciences Faculty Publications

Although variation in effect sizes and predicted values among studies of similar phenomena is inevitable, such variation far exceeds what might be produced by sampling error alone. One possible explanation for variation among results is differences among researchers in the decisions they make regarding statistical analyses. A growing array of studies has explored this analytical variability in different fields and has found substantial variability among results despite analysts having the same data and research question. Many of these studies have been in the social sciences, but one small “many analyst” study found similar variability in ecology. We expanded the scope …