Life Sciences Commons^™

Durability And Steel Corrosion Resistance Of Fly Ash Concrete Exposed To Groundwater, Mohamed Ahmed Bayomy, Khaled M. Osman, Hala Emad Elden Fouad

Mansoura Engineering Journal

This article proposes replacing Ordinary Portland Cement (OPC) with a fly ash (FA)-based geopolymer (GP) material, activated by a chemical activator, as the binding material. A 90-day study was conducted to evaluate the performance of fly ash geopolymer concrete (GPC) in a corrosive environment (groundwater). Scanning electron microscopy (SEM), compression testing, and energy-dispersive X-ray spectroscopy (EDX) were used to assess the toughness of the samples. Additionally, the linear polarization resistance (LPR) method was employed to measure the corrosion of steel embedded in the concrete structures. The comparison shows that increasing the fly ash (FA) content in geopolymer concrete (GPC) enhances …

The Roles Of Cup1, Ssu1, And Mitochondrial Dna In Copper Tolerance In Wild Yeasts, Madeleine Panek

Undergraduate Honors Theses

Understanding the genetic basis of complex traits remains a central challenge in biology. In Saccharomyces cerevisiae, copper resistance is a multifactorial trait shaped by both genetic and environmental influences, yet its underlying mechanisms are not fully understood. The genes CUP1 and SSU1 are known to influence copper resistance, though how these genes interact with each other and with mitochondrial DNA (mtDNA) variation in wild yeast populations is unknown. I hypothesized that the genes CUP1 and SSU1 and variation in mtDNAs contribute to copper resistance in wild yeasts independently and through genetic interactions. To test this, I measured copper resistance …

Senescent Cancer-Associated Fibroblasts Mediate Immunosuppression And Promote Breast Cancer Progression, Jiayu Ye

Arts & Sciences Graduate Student Theses and Dissertations

Breast cancer is the most frequently diagnosed cancer among women worldwide, and aging is the largest risk factor for breast cancer development. The process of aging is typically accompanied by a progressive accumulation of senescent cells, which are characterized by a series of markers such as p16INKA4 (p16) positivity and a distinctive profile of secretory factors including mitogens, cytokines, and extracellular matrix (ECM) proteins that are collectively recognized as senescence-associated secretory phenotype (SASP). Numerous data so far have shown that senescent stromal cells play critical roles in modulating tumor microenvironment and progression. For example, senescent fibroblasts induced in vitro could …

Reduced Venetoclax Exposure To 7 Days Vs Standard Exposure With Hypomethylating Agents In Newly Diagnosed Aml Patients, Christophe Willekens, Alexandre Bazinet, Samy Chraibi, Alex Bataller, Justine Decroocq, Naszrin Arani, Benjamin Carpentier, Caitlin Rausch, Delphine Lebon, Abhishek Maiti, Nicolas Gauthier, Nicholas Short, Sarah Bonnet, Koji Sasaki, Sabine Khalife-Hachem, Mahesh Swaminathan, Jean-Baptiste Micol, Florence Pasquier, Christophe Marzac, Damien Roos-Weil, Laurent Pascal, Naval Daver, Tapan Kadia, Didier Bouscary, Farhad Ravandi, Arnaud Pages, Hagop Kantarjian, Stéphane De Botton, Courtney Dinardo

Faculty, Staff and Student Publications

Hypomethylating agent (HMA) plus venetoclax (VEN) regimens are standard of care in patients with acute myeloid leukemia (AML) ineligible for intensive chemotherapy. While the VEN label recommends continuous 28-day cycles, shortened VEN durations may induce similar response rates and improve tolerability. It is unknown how a VEN exposure reduced to 7 days during cycles compares to standard HMA + VEN. We retrospectively compared newly diagnosed AML patients treated with azacitidine (AZA) x 7 days plus VEN x 7 days ("7 + 7" regimen) from the first cycle (n = 82) vs patients treated with standard dose HMA + VEN (std-HMA/VEN) …

Multimeric Transcription Factor Bcl11a Utilizes Two Zinc-Finger Tandem Arrays To Bind Clustered Short Sequence Motifs, John R Horton, Meigen Yu, Jujun Zhou, Melody Tran, Rithvi R Anakal, Yue Lu, Robert M Blumenthal, Xiaotian Zhang, Yun Huang, Xing Zhang, Xiaodong Cheng

Faculty, Staff and Student Publications

BCL11A, a transcription factor, is vital for hematopoiesis, including B and T cell maturation and the fetal-to-adult hemoglobin switch. Mutations in BCL11A are linked to neurodevelopmental disorders. BCL11A contains two DNA-binding zinc-finger arrays, low-affinity ZF2-3 and high-affinity ZF4-6, separated by a 300-amino-acid linker. ZF2-3 and ZF4-5 share 73% identity, including five out of six DNA base-interacting residues. These arrays bind similar short sequence motifs in clusters, with the linker enabling a broader binding span. Crystallographic structures of ZF4-6, in complex with oligonucleotides from the β-globin locus region, reveal DNA sequence recognition by residues Asn756 (ZF4), Lys784 and Arg787 (ZF5). A …

Humanized Saccharomyces Cerevisiae Provides A Facile And Effective Tool To Identify Damaging Human Variants That Cause Exosomopathies, Khondakar Sayef Ahammed, Milo B Fasken, Anita H Corbett, Ambro Van Hoof

Faculty, Staff and Student Publications

The RNA exosome is an evolutionarily conserved, multiprotein complex that is the major RNase in 3' processing and degradation of a wide range of RNAs in eukaryotes. Single amino acid changes in RNA exosome subunits cause rare genetic diseases collectively called exosomopathies. However, distinguishing disease-causing variants from nonpathogenic ones remains challenging, and the mechanism by which these variants cause disease is largely unknown. Previous studies have employed a budding yeast model of RNA exosome-linked diseases that relies on mutating the orthologous yeast genes. Here, we develop a humanized yeast model of exosomopathies that allows us to unambiguously assess damaging effects …

Kras Mutation Detection By Liquid Biopsy For Pancreatic Ductal Adenocarcinoma, Mahmoud Yousef, Abdelrahman Yousef, Mark W Hurd, Ashwathy Pillai, Saikat Chowdhury, Rebecca Snyder, Mark Knafl, Ryan L Lewis, Paul M Roy, Mohammad Fanaeian, Sali Albarouki, Luca F Castelnovo, Jennifer Peterson, Brandon G Smaglo, Robert A Wolff, Shubham Pant, Jason Willis, Ryan Huey, Michael Overman, Ching-Wei Tzeng, Michael P Kim, Naruhiko Ikoma, Jess E Maxwell, Matthew H G Katz, Huamin Wang, Anirban Maitra, Eugene Koay, Ethan B Ludmir, Anthony Chen, Camila Lopez, Haoqiang Ying, John Paul Shen, Dan Zhao

Faculty, Staff and Student Publications

The clinical utility of liquid biopsy (LB) for pancreatic ductal adenocarcinoma (PDAC) remain understudied. Our single-institution cohort of 311 PDAC patients with non-tumor tissues informed LB found 81.2% positivity (N = 186) in metastatic cases and in 52.4% (N = 43) of localized disease. KRAS mutations were detected in 64.6% (N = 148) of metastatic cases and 16% (N = 13) for localized disease. Positive LB, especially KRAS mutation detection, is associated with worse overall survival (OS) in metastatic PDAC (median 14.5 vs. 31.3 months, HR = 2.7, 95%CI = 1.7-4.3, P <  0.0001). The positive concordance rates of KRAS and TP53 mutations were 63% and 68% in metastatic disease but only 7% (KRAS) and 33% (TP53) in localized disease, respectively. Among the 41 patients who underwent serial liquid biopsy testing, 25% tested positive after an initial negative result. LB detects therapeutically targetable mutations in 58.5% of PDAC patients and is associated with OS.

Novel Therapeutics For Myeloid Malignancies, Tim Kong

Arts & Sciences Graduate Student Theses and Dissertations

Myeloid malignancies are a group of heterogenous and clonal disorders that include myeloproliferative neoplasms (MPNs) and acute myeloid leukemia (AML). These blood cancers are driven by characteristic oncogenes and propagated by pro-inflammatory niches; MPNs demonstrate hyperactive JAK-STAT signaling and upregulate cytokines including TNF, IL-6, and IL-8. Current therapeutics such as ruxolitinib targeting JAK2 providing symptomatic benefit to MPN patients but are not curative and do not prevent disease transformation to acute myeloid leukemia (AML). As such, greater understanding of the underlying disease biology is still required with means of uncover cancer dependencies. Here, we utilize a series of multi-omic approaches …

The Effects Of Stress On Injury And Sickness Rates Of Middle-Distance And Distance D3 Athletes, Hailey D. Smith Ms.

Student Scholar Showcase

A runner intentionally stresses their body to experience an adaptation, however, issues occur when the body does not have time to recover. Male athletes (n = 14) on the University of Lynchburg’s distance and middle-distance team participated in this study. For 6 weeks, heart rate variability (HRV4training app), resting heart rate, perceived stress, and cortisol levels were assessed as indicators of recovery and stress. It was anticipated that indicators of physical stress such as higher resting heart rates and higher cortisol levels, would correspond with greater perceived stress and higher occurrence of injury and sickness. Cortisol (n = 2, p …

Research Week 2025, Michael Schueth

Research Week

Welcome to Undergraduate Research Week at Collin College!

This week celebrates the innovative research and scholarly work of our undergraduate students across all disciplines. From our informative webinars to Cultivating Scholars, our student poster presentation, the week offers opportunities to explore new ideas, share discoveries, and connect with fellow researchers and faculty mentors.

We invite all students, faculty, and staff to participate in these events designed to highlight the importance of undergraduate research in academic and professional development. Whether you're presenting your work or simply curious about your peers' projects, your engagement helps foster our college's culture of inquiry and …

Cultivating Scholars 2025, Elizabeth Hamner

Research Week

Cultivating Scholars is an interdisciplinary event promoting undergraduate students and their special interest topics. It is a research-based setting meant to imitate a professional conference. Students work with Faculty Mentors to conduct a high-quality project and present it to the community.

Date: April 24, 2025, 5:30-7:30 p.m.

Place: Collin College, Frisco Campus Conference Center

Investigating The Effect Of Soil Origin On Antibiotic Production In Streptomyces, Emu Suzuki

Undergraduate Research Symposium 2025

Streptomyces bacteria produce antibiotics that inhibit competing microorganisms. We hypothesized that Streptomyces from the rhizosphere (around plant roots) would be more likely to produce antibiotics than those from bulk soil (further away from roots). Soil samples were collected from rhizosphere and bulk soils in transitional and long-term organic fields of corn and alfalfa. Streptomyces from these soils were cultured on glucose-asparagine agar media. Their antibiotic production was evaluated by testing whether they could inhibit the growth of two target Streptomyces strains. No significant effects of soil type (rhizosphere vs. bulk), crop, or management on antibiotic production were observed for one …

Empowering Rural Communities: Unlocking Potential Through The Online Rural Economic & Community Vitality Graduate Certificate, Daniela Mattos

Cornhusker Economics

In today’s evolving economic landscape, rural Nebraska stands at a crossroads. While communities face challenges like population decline, job loss, and infrastructure needs, they also have enormous potential for growth, innovation, and resilience. The key to unlocking this potential lies in skilled, passionate leaders ready to shape the future.

The Rural Economic & Community Vitality (RECV) Graduate Certificate offered 100% online by the University of Nebraska–Lincoln’s Department of Agricultural Economics, provides a powerful platform to do just that. This 12-credit, no-prerequisite program is designed for individuals eager to create real, lasting impact in rural communities—whether you're already working in …

How Aza Zoos And Aquariums Are Helping To Fill The Gap, Erika Bauer, Grace Fuller, Candice Dorsey

Animal Sentience

Oldfield & Bonano (2024) identify significant gaps in scientific knowledge about certain animal taxa, such as reptiles, amphibians, invertebrates, and fish. Despite some efforts, published literature remains limited, forcing decision-makers to rely more on experiential knowledge than scientific evidence. AZA-accredited zoos and aquariums are uniquely positioned to bridge these gaps and advance animal welfare science by fostering collaboration, building partnerships, and promoting multi-disciplinary approaches to welfare assessments.

Avian Detection Data And Environmental Covariates For Utah, Usa Over The Years 2017-2021, Amanda L. Hayes-Puttfarcken

Browse all Datasets

Integrated Monitoring in Bird Conservation Regions (IMBCR) detection data for the state of Utah, USA, and LANDFIRE uncharacteristic exotic Departure Score data over Utah during our study period, as well as additional environmental covariates used to make the model more ecologically accurate. Environmental covariates include average May precipitation, average June temperature, distance to the nearest road, percent canopy cover, and the percent of three habitat types as defined by LANDFIRE; open tree canopy, herbaceous, and shrubland.

The Effects Of Diverse Bitter Gourds On Newly Formed Mcf-7/G1p3 And Mcf-7/Vector Cancer Cells, Eder Colmenero

Honors Theses

Breast cancer has become one of the deadliest cancers to affect women worldwide. Although treatments have been developed, no cure has been found for this disease. An emerging field with cancer treatments shows how isoflavones can be critical to limiting hormone-related cancers. In this study, the effects of Momordica charantia (bitter gourd) extracts will be investigated in two separate cell lines. These cell lines include MCF-7 and G1P3 with the G1P3 cell line being the more aggressive cancer. Bitter gourd, which is mainly harvested in Asia, has been shown to display apoptotic features when contracting cancer. Although it is unknown …

First Record Of Corella Japonica In California, Lauren M. Stefaniak, Marie L. Nydam, Susanna López-Legentil

Marine Science

Many ascidian (sea squirt) species are common members of fouling communities, particularly on floating substrates such as docks and pilings and through maritime transport, have been introduced worldwide. For the past 30 years, marinas in Southern California have been regularly monitored for introduced species due to their proximity to the international shipping terminals in Los Angeles and Long Beach Harbors. Here, we report on the first record in the eastern Pacific of an ascidian in the family Corellidae (O. Phlebobranchia), Corella japonica, found at the Newmarks Yacht Centre in Los Angeles Harbor. This study further highlights the importance of continuously …

How Childhood Maltreatment Shapes Brain Regions: Considerations For Speech-Language Pathology, Alexa G. Sees

Honors Thesis

Childhood maltreatment is a pervasive issue that affects millions of children worldwide, leading to alterations in key structures such as the limbic system, basal ganglia, corpus callosum, visual cortex, and language areas. These changes result in significant cognitive, emotional, and neurological consequences, such as learning deficits, emotional regulation issues, memory problems, reduced vocabulary size, speech errors, etc. This thesis explores the neurological effects of childhood maltreatment and their implications for speech-language pathology, highlighting how maltreatment-induced brain changes affect areas within the scope of speech-language pathology, such as social communication, language development, and behavior management. These results underscore the importance of …

Early Detection Of Colon Cancer Through Colonoscopy: Analysis Of Tumor Size And Resection Length, Alyssa Haddock

Honors Theses

Colon cancer remains a leading cause of cancer-related deaths in the United States, with early detection critical for improved outcomes. Colonoscopy is a primary screening tool that can reduce incidence rates through the identification and removal of precancerous polyps. This study examines how undergoing a colonoscopy prior to diagnosis impacts two key surgical outcomes: tumor size and colon resection length. Data were collected from 70 de-identified patients who underwent colon resection for colon cancer between 2019 and 2024 at two regional hospitals in East Texas: Hunt Regional Medical Center and Mother Christus Frances Hospital. Using pathology reports, tumor size and …

The Effects Of Maclura Pomifera On Mcf-7/Vector And Mcf-7/G1p3 Breast Cancer Cells, Khushi Bhatt

Honors Theses

Breast cancer is considered one of the most common types of cancer, mainly affecting women worldwide. The most aggressive type is Triple-negative breast cancer, which accounts for approximately 10-15% of the total amount of breast cancer cases. The majority of breast cancer cases are regarded as estrogen receptor-positive, accounting for 70% of the total number. Current treatment options consist of immunotherapy, surgery, endocrine therapy, and chemotherapy. Research in breast cancer treatment has been a topic of interest in recent years, as the rate of individuals becoming diagnosed is increasing. The Osage orange, or Maclura pomifera, is a fruit native to …

Milk Composition Variability In Texas Dairy Farms Over Time, Emma Van Dieden

Honors Theses

The composition of milk plays a vital role in determining the quality of dairy products. However, there has been limited research on how key milk components have changed over time in the diverse production regions of Texas. This thesis seeks to achieve two main goals: first, to quantify long-term trends from 2007 to 2022 in butterfat percentage, protein percentage, and somatic cell count (SCC) across the ten Texas Dairy Marketing regions, and second, to assess whether the differences observed in these indicators across regions are statistically significant. Data from the USDA Southwest Milk Marketing Area provided insights at the regional …

Perfectionism, Anxiety, And Depression: A Comparison Of Student Mental Health At East Texas A&M University: Honors Vs Non-Honors, Connor Hall

Honors Theses

Honors students at East Texas A&M University (ETAMU) may have higher expectations to succeed due to greater course load and pressure versus students who are not in the honors program. These expectations can lead to stress that may cause perfectionism, anxiety, or depression (Rice, 2006; Wan, 2022; Van Praag, 2004). This study sought to determine if higher expectations and course load could lead to differences in mental health in honors versus non-honors students at East Texas A&M University. In order to determine these mental health characteristics, data was gathered using responses to a Qualtrics survey sent to 7527 ETAMU undergraduate …

The Implications Of The Scientific Developments Behind Oxidative Stress, Heat-Shock Proteins, And Antioxidants On Neurodegenerative Pathology, Nolan Wilbourn

Honors Theses

Homeostasis is essential for the health and development of all organisms, serving as a universal defense mechanism that ensures the stability of physiological processes faced with external and internal stimuli in the form of health challenges (Archana et al., 2017). Maintaining homeostasis is crucial for our health, as it helps keep the body's internal balance. However, this delicate equilibrium is challenged by various environmental factors, such as diet, exposure to chemicals, and fluctuations in temperature (Collier et al., 2017). These disruptions can lead to dysfunction in cellular processes, particularly affecting the production and regulation of proteins vital for biological functions. …

Equine Whole Body Vibration Therapy: An Explanation On Whole Body Vibration On Equine Health And Performance, Lauren Amour

Honors Theses

The objective of this study is to assess outcomes of varying protocols of whole body vibration (WBV) on equine performance based on improved blood circulation. Two American Quarter Horses (AQHA; Equus caballus; n=2; 1, eleven year-old mare; 1, five year-old gelding), will be subjected to whole body vibration therapy on an EQUIVIBE platform for 3 weeks at the ETAMU Equine Lab (33.1872132, -95.9313238). Times spent on a WBV plate will be 15 minutes, 23.5 minutes and 30 minutes at 30hz. A standard washout period of 72 hours will be in place between each week of treatment (Atalaia et al., 2021). …

Drinking Behavior And Performance In Neonatal Swine, Yasmine Taylor

Honors Theses

This behavioral study analyzes the relationship between water intake and growth performance in pre-weaned piglets. Growth is paramount in pork production, and maximizing growth in weaned piglets has been thoroughly researched. However, one crucial aspect of growth is often overlooked: water, especially in neonatal piglets. Therefore, this study aimed to determine if there is a positive relationship between water intake and performance in pre-weaned piglets by observing different behaviors. Weights were recorded at birth, after 7-10 days, and at weaning. Piglets were observed three times a day, in the morning, afternoon, and evening, for 21 days via scan sampling. Observation …

Models And Mechanisms Of Chemotherapy-Induced Side Effects, Junwei Du

McKelvey School of Engineering Graduate Student Theses & Dissertations

Cancer is among the leading causes of death worldwide. Chemotherapy remains a cornerstone in the treatment of various cancers; however, it often leads to a range of debilitating side effects that compromise its efficacy and profoundly impact patients' quality of life and psychosocial well-being. These side effects can be broadly categorized into short-term effects, such as nausea, vomiting, fatigue, hair loss, and neutropenia, and long-term effects which can persist months or even years after treatment, including peripheral neuropathies, cognitive impairment, cardiotoxicity, nephrotoxicity and ototoxicity. Among the most common and dose-limiting side effects are chemotherapy-induced peripheral neuropathy (CIPN) and cardiotoxicity (CTX). …

Deep Learning-Based Automatic Segmentation Of Cerebral Infarcts On Diffusion Mri, Wi-Sun Ryu, Dawid Schellingerhout, Jonghyeok Park, Jinyong Chung, Sang-Wuk Jeong, Dong-Seok Gwak, Beom Joon Kim, Joon-Tae Kim, Keun-Sik Hong, Kyung Bok Lee, Tai Hwan Park, Sang-Soon Park, Jong-Moo Park, Kyusik Kang, Yong-Jin Cho, Hong-Kyun Park, Byung-Chul Lee, Kyung-Ho Yu, Mi Sun Oh, Soo Joo Lee, Jae Guk Kim, Jae-Kwan Cha, Dae-Hyun Kim, Jun Lee, Man Seok Park, Dongmin Kim, Oh Young Bang, Eung Yeop Kim, Chul-Ho Sohn, Hosung Kim, Hee-Joon Bae, Dong-Eog Kim

Faculty, Staff and Student Publications

We explored effects of (1) training with various sample sizes of multi-site vs. single-site training data, (2) cross-site domain adaptation, and (3) data sources and features on the performance of algorithms segmenting cerebral infarcts on Magnetic Resonance Imaging (MRI). We used 10,820 annotated diffusion-weighted images (DWIs) from 10 university hospitals. Algorithms based on 3D U-net were trained using progressively larger subsamples (ranging from 217 to 8661), while internal testing employed a distinct set of 2159 DWIs. External validation was conducted using three unrelated datasets (n = 2777, 50, and 250). For domain adaptation, we utilized 50 to 1000 subsamples from …

Exploring The Acute Effects Of Sedentary Behaviors On Cardiometabolic Risk In Hispanic Adolescents With Obesity: A Randomized Crossover Study, Erica G Soltero, Osamah Salim, Yiming Mirabile, Salma M Musaad

Children’s Nutrition Research Center Staff Publications

Background/Objectives: Time spent in sedentary pursuits is associated with adverse metabolic profiles. Adolescents spend 65-75% of their day in sedentary pursuits; however, evidence among youth is less conclusive. This study examined the effects of an acute 4 h bout of sedentary behaviors on cardiometabolic outcomes and energy expenditure in Hispanic adolescents (12-16 years old) with obesity (BMI% ≥ 95th).

Methods: This study used a randomized cross-over design to engage participants (N = 12) in two sedentary conditions, an active condition where youth were engaged in two hours of 'active' sitting activities (e.g., reading and puzzles) and two hours …

Maximizing Chances For Profit When Marketing Cattle In Livestock Auctions, Holli Heim

Undergraduate Research Conference

The objective of this study is to supply producers with data that will help to ensure that they are marketing their calf crop at proper times to ensure higher levels of profit. The information produced in this study is intended to be used with other management tools.

Ammonia Production From Cattle At The Walter C. Todd Agricultural Research Center, Sydney Cunningham, Elizabeth Smith, Rachel Nelson, Brayden Wagner

Undergraduate Research Conference

The Walter C. Todd Agricultural Research Center cattle pen was tested to measure the ammonia emission rates produced by cattle. Samples were collected from six testing locations. Eighteen samples were taken across three days of testing, in 8-hour increments. We found that small-scale cattle in open-air pens produce minimal amounts of ammonia that are not a concern for air quality. Ammonia was detectable in small quantities in the testing sites adjacent to the cattle and not in locations more than 0.1 miles away.