Nesting Ecology Of The Northern Beardless-Tyrannulet (Camptostoma Imberbe) In The Lower Rio Grande Valley Of Texas, Usa, Scott M. Werner, Sallie J. Hejl, Timothy Brush

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

During 2002–2003, we studied the breeding ecology of the Northern Beardless-Tyrannulet (Camptostoma imberbe), a poorly known and rare permanent resident in the Lower Rio Grande Valley of Texas, United States of America. We found 28 nests in clusters of Spanish moss (Tillandsia usneoides) or ball moss (T. recurvata), 93% of which were in cedar elm (Ulmus crassifolia) trees. Nest-building, incubation, and nestling periods averaged 7.0, 14.0, and 18.5 days, respectively. Of the 28 nests, 43% were successful, while 38% of the failed nests showed obvious signs of depredation. Nests were located in …

Ecosystem-Based Fisheries Management (Ebfm) Risk Assessment Of The Western Australian Silver-Lipped Pearl Oyster (Pinctada Maxima) Industry, K. L. Travaille, R. Jones, B Wise

WA Marine Stewardship Council report series

This report provides a comprehensive overview of the Western Australian silver-lipped pearling (Pinctada maxima) industry and the outcomes from the 2015 ecological risk assessment of this industry. The P. maxima pearling industry has been operating in Western Australia since the 1880s, initially harvesting pearl oysters for mother-of-pearl production.

Modeling Observed Animal Performance Using The Weibull Distribution, Travis J. Hagey, Jonathan B. Puthoff, Kristen E. Crandell, Kellar Autumn, Luke J. Harmon

Biology

To understand how organisms adapt, researchers must link performance and microhabitat. However, measuring performance, especially maximum performance, can sometimes be difficult. Here, we describe an improvement over previous techniques that only consider the largest observed values as maxima. Instead, we model expected performance observations via the Weibull distribution, a statistical approach that reduces the impact of rare observations. After calculating group-level weighted averages and variances by treating individuals separately to reduce pseudoreplication, our approach resulted in high statistical power despite small sample sizes. We fitted lizard adhesive performance and bite force data to the Weibull distribution and found that it …

Study Of Rehydration Properties Of Powder Produced From Chelated Skim Milk, Kristina Ellice Tan

Master's Theses

Poor rehydration properties of skim milk powder (SMP) can impact processing efficiency and functionality in finished product applications. Rehydration can be split into four stages: wettability, sinkability, dispersibility, and solubility. Previous work has suggested that chelator addition during SMP manufacture leads to higher solubility compared to SMP without chelators. This study focuses on the addition of ethylene diamine tetraacetic acid (EDTA) or sodium citrate dihydrate (SCD) at concentrations of 5, 10, and 15 mM to skim milk prior to evaporating and spray drying. The objective of this investigation was to determine the effects of the chelator additions on each SMP …

Tnf And Cd28 Signaling Play Unique But Complementary Roles In The Systemic Recruitment Of Innate Immune Cells After Staphylococcus Aureus Enterotoxin A Inhalation, Julia Svedova, Naomi Tsurutani, Wenhai Liu, Kamal M. Khanna, Anthony T. Vella

UCHC Articles - Research

TNF and CD28 Signaling Play Unique but Complementary Roles in the Systemic Recruitment of Innate Immune Cells after Staphylococcus aureus Enterotoxin A Inhalation.

Development Of A Laser Capture Microscope-Based Single-Cell-Type Proteomics Tool For Studying Proteomes Of Individual Cell Layers Of Plant Roots, Yingde Zhu, Hui Li, Sarabjit Bhatti, Suping Zhou, Yong Yang, Tara Fish, Theodore W. Thannhauser

Agricultural and Environmental Sciences Faculty Research

Single-cell-type proteomics provides the capability to revealing the genomic and proteomics information at cell-level resolution. However, the methodology for this type of research has not been well-developed. This paper reports developing a workflow of laser capture microdissection (LCM) followed by gel-liquid chromatography-tandem mass spectrometry (GeLC-MS/MS)-based proteomics analysis for the identification of proteomes contained in individual cell layers of tomato roots. Thin-sections (~10-μm thick, 10 sections per root tip) were prepared for root tips of tomato germinating seedlings. Epidermal and cortical cells (5000–7000 cells per tissue type) were isolated under a LCM microscope. Proteins were isolated and then separated by SDS–polyacrylamide …

Jumpin’ Jacks: Social Marketing Campaign Aimed To Increase Awareness Of Healthful Behavior In South Dakota Fourth Grade Students, Megan N. Olesen, Kendra Kattelmann, Jessica Meendering, Suzanne Stluka

Health and Nutritional Sciences Faculty Publications

This study investigated the influence of utilizing a collegiate mascot as a marketing tool for the promotion of fruit and vegetable intake and physical activity among 4th grade students. The program utilized service learning and formative research for the development of a social marketing campaign comprised of nutrition education and brand marketing. A pre-test/post-test design was used to measure fruit and vegetable intake and physical activity in participants in intervention and control schools. Awareness and understanding of the campaign was assessed post-intervention. There were no changes in fruit and vegetable intake or physical activity. However, 91% of the intervention students …

Injury Severity Data For Front And Second Row Passengers In Frontal Crashes, Theresa Atkinson, Leszek Gawarecki, Massoud Tavakoli

Crash Safety Center Publications

The data contained here were obtained from the National Highway Transportation Safety Administration׳s National Automotive Sampling System – Crashworthiness Data System (NASS-CDS) for the years 2008–2014. This publically available data set monitors motor vehicle crashes in the United States, using a stratified random sample frame, resulting in information on approximately 5000 crashes each year that can be utilized to create national estimates for crashes. The NASS-CDS data sets document vehicle, crash, and occupant factors. These data can be utilized to examine public health, law enforcement, roadway planning, and vehicle design issues. The data provided in this brief are a subset …

Identification Of Genes That Are Essential To Restrict Genome Duplication To Once Per Cell Division., Alex Vassilev, Chrissie Y. Lee, Boris Vassilev, Wenge Zhu, Pinar Ormanoglu, Scott E. Martin, Melvin L. Depamphilis

Biochemistry and Molecular Medicine Faculty Publications

Nuclear genome duplication is normally restricted to once per cell division, but aberrant events that allow excess DNA replication (EDR) promote genomic instability and aneuploidy, both of which are characteristics of cancer development. Here we provide the first comprehensive identification of genes that are essential to restrict genome duplication to once per cell division. An siRNA library of 21,584 human genes was screened for those that prevent EDR in cancer cells with undetectable chromosomal instability. Candidates were validated by testing multiple siRNAs and chemical inhibitors on both TP53+ and TP53- cells to reveal the relevance of this ubiquitous tumor suppressor …

Inflammatory Bowel Disease, Colorectal Cancer And Type 2 Diabetes Mellitus: The Links., Abdo Jurjus, Assad Eid, Sahar Al Kattar, Marie Noel Zeenny, Alice Gerges-Geagea, Rosalyn A. Jurjus, +10 Additional Authors

Anatomy and Regenerative Biology Faculty Publications

The co-occurrence of the three disease entities, inflammatory bowel disease (IBD), colorectal cancer (CRC), type 2diabetes mellitus (T2DM) along with inflammation and dismicrobism has been frequently reported. Some authors have even suggested that dysbiosis could be the link through a molecular crosstalk of multiple inflammatory loops including TGFβ, NFKB, TNFα and ROS among others. This review focuses on the inflammatory process along with the role of microbiota in the pathophysiology of the three diseases. The etiology of IBD is multifactorial, and like CRC and T2DM, it is associated with a widespread and sustained GI inflammation and dismicrobism, whereby an array …

Is Aerosalization A Problem With Carbapenem-Resistant Acinetobacter Baumannii In Thailand Hospital?, Anucha Apisarnthanarak, Ploenpit Tantajina, Pornpimol Laovachirasuwan, David J. Weber, Nalini Singh

Pediatrics Faculty Publications

We evaluated the presence of air contamination with carbapenem-resistant Acinetobacter baumannii (CRAB) in medical units where patients with CRAB pneumonia were hospitalized, and in Obstetrics and Gynecology units with open-air ventilation in-patient settings. There was no evidence of CRAB contamination in either of the units.

Combined Metformin And Resveratrol Confers Protection Against Uvc-Induced Dna Damage In A549 Lung Cancer Cells Via Modulation Of Cell Cycle Checkpoints And Dna Repair, Yong-Syu Lee, Barbara B. Doonan, Joseph M. Wu, Tze-Chen Hsieh

NYMC Faculty Publications

Aging in humans is a multi-factorial cellular process that is associated with an increase in the risk of numerous diseases including diabetes, coronary heart disease and cancer. Aging is linked to DNA damage, and a persistent source of DNA damage is exposure to ultraviolet (UV) radiation. As such, identifying agents that confer protection against DNA damage is an approach that could reduce the public health burden of age-related disorders. Metformin and resveratrol have both shown effectiveness in preventing several age-related diseases; using human A549 cells, we investigated whether metformin or resveratrol, alone or combined, prevent UVC-induced DNA damage. We found …

The Farm Newsletter, Usu Student Organic Farm

USU Student Organic Farm Newsletter

We had a volunteer day this last week on Wednesday when about 12-15 people from a school in Brigham City showed up to help us on the farm. They were there for about three hours and during that time we were able to prepare nearly all of our seed beds and plant about a third of them. We were also able to set up the irrigation sprinklers so that we don't have to water by hand. Some of the remaining planting beds will also be seeded, but the majority are for transplants from the greenhouse. We have been able to …

Oncogenic Pik3ca Mutations Reprogram Glutamine Metabolism In Colorectal Cancer, Yujun Hao, Yardena Samuels, Qingling Li, Dawid Krokowski, Bo-Jhih Guan, Chao Wang, Zhicheng Jin, Bohan Dong, Bo Cao, Xiujing Feng, Min Xiang, Claire Xu, Stephen Fink, Neal J. Meropol, Yan Xu

Chemistry Faculty Publications

Cancer cells often require glutamine for growth, thereby distinguishing them from most normal cells. Here we show that PIK3CA mutations reprogram glutamine metabolism by upregulating glutamate pyruvate transaminase 2 (GPT2) in colorectal cancer (CRC) cells, making them more dependent on glutamine. Compared with isogenic wild-type (WT) cells, PIK3CA mutant CRCs convert substantially more glutamine to alpha-ketoglutarate to replenish the tricarboxylic acid cycle and generate ATP. Mutant p110 alpha upregulates GPT2 gene expression through an AKT-independent, PDK1-RSK2-ATF4 signalling axis. Moreover, aminooxyacetate, which inhibits the enzymatic activity of aminotransferases including GPT2, suppresses xenograft tumour growth of CRCs with PIK3CA mutations, but not …

Physiological And Molecular Characterisation Of Lucerne (Medicago Sativa L.) Germplasm With Improved Seedling Freezing Tolerance, M. Rokebul Anowar, Anne Fennell, Arvid Boe, Ivan W. Mott, Michael D. Peel, Yajun Wu

Agronomy, Horticulture and Plant Science Faculty Publications

We conducted greenhouse experiments to compare 14 lucerne (alfalfa, Medicago sativa L.) germplasms for their survival following freezing. Some are collections adapted to the Grand River National Grasslands in South Dakota. We hypothesised that these collections might have developed a tolerance to survive the frigid growth conditions common there. Two of these collections, River side (RS) and Foster ranch (FR), showed greater freezing tolerance than the other germplasms tested, based on their consistent survival rates with or without cold acclimation. In multiple freezing studies, RS and FR had average survival rates of 74% and 79%, respectively, in contrast to the …

The Impact Of A Smarter Lunchrooms Makeover On Children's Food Choice And Consumption, Polina Zhuzhina

Master's Theses

Childhood obesity has tripled over the past three decades and poses a serious public health problem. The Smarter Lunchrooms Movement aims to increase healthy eating by incorporating low-cost to no-cost alterations to the school lunchroom in an effort to increase consumption of healthier foods, such as fruits and vegetables, by making them more attractive and convenient.

Our study implemented Smarter Lunchrooms interventions at two primarily Hispanic elementary schools in Paso Robles, CA. The interventions focused on increasing the appeal of the salad bars, including installation of age-appropriate signage highlighting fruits and vegetables, as well as branding of fruits and vegetables …

Review: 'Neurobiology: A Functional Approach', Paul Tibbetts

Philosophy Faculty Publications

The focus of this volume is on how nervous systems work and why they work as they do in the context of “the problems that brains help organisms solve” (p. xix). Accordingly, throughout this 16-chapter publication, the focus of the author is more on neural architecture and functioning at the circuitry and systems levels of analysis than on cellular and genetic factors. Actually, I found a nicely balanced and constantly interwoven discussion of all of these levels of analysis. The opening chapter is an overview of neuroanatomy and organization, neural circuitry, and functional architecture.

In order, the following chapters cover …

Meox2 Haploinsufficiency Increases Neuronal Cell Loss In A Mouse Model Of Alzheimer's Disease, Ileana Soto Reyes, Weronika A. Grabowska, Kristen D. Onos, Leah C. Graham, Harriet M. Jackson, Stephen N. Simeone, Gareth R. Howell

College of Science & Mathematics Departmental Research

Evidence suggests that multiple genetic and environmental factors conspire together to increase susceptibility to Alzheimer's disease (AD). The amyloid cascade hypothesis states that deposition of the amyloid-β (Aβ) peptide is central to AD; however, evidence in humans and animals suggests that Aβ buildup alone is not sufficient to cause neuronal cell loss and cognitive decline. Mouse models that express high levels of mutant forms of amyloid precursor protein and/or cleaving enzymes deposit amyloid but do not show neuron loss. Therefore, a double-hit hypothesis for AD has been proposed whereby vascular dysfunction precedes and promotes Aβ toxicity. In support of this, …

Nebline, June 2016

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Feature: The Garden Grocery — Food Safety & Selection at Farmers’ Markets

Food & Health

Farm & Acreage

Pests & Wildlife

Horticulture

Early Childhood

4-H & Youth

Extension Calendar

and other extension news and events

Effect Of The 2013-2015 California Drought On Small Mammal Abundance And Diversity In Chaparral, Oak Woodland And Riparian Habitats, Nicole Desideri

Biological Sciences

Long-term biodiversity surveys are a useful tool for assessing the impacts of stochastic events on wildlife and their communities. A recent stochastic event to affect the state of California is the historic 2013-2015 drought. This drought, described as a one-in-one-thousand year event, brought precipitation to a historic low; the statewide rainfall reaching 34% below average (Swain et al. 2014). While humans are feeling the impact of this water shortage, the effects on native ecosystems and wildlife populations are poorly documented. Baseline small mammal biodiversity data collected in 2011, before the drought, allows us the opportunity to study the impacts of …

Impact Of An Active Educational Video Game On Children's Motivation, Science Knowledge, And Physical Activity, Haichun Sun, Yong Gao

Kinesiology Faculty Publications and Presentations

Background: Active educational video games (AVGs) appear to have a positive effect on elementary school students’ motivation leading to enhanced learning outcomes. The purpose of this study was to identify the effectiveness of an AVG on elementary school students’ science knowledge learning, physical activity (PA) level, and interest-based motivation.

Methods: In this randomized controlled study, 53 elementary school students were assigned to an experimental condition or a comparison condition. The experimental condition provided an AVG learning environment, whereas the comparison condition was based on sedentary educational video games.

Results: The results of repeated measures analysis of variance (ANOVA) on the …

How Does Agroforestry Help Crop Pollination?

Working Trees (USDA-NAC)

Agroforestry helps crop pollination via enhanced pollination efficiency, pollinator habitat, and pollinator protection.

Life In The Cold: An Investigation Of Polar Regions, Briar Bragdon, Ashley Breault, Bailey Bush, Jennifer Gamble, Rebecca Hudak, Emily Johnston, Kaitlyn Kennedy, Alexandria Makucewicz, Sharlene Maynard, Erin Mohr, Gwen Pelletier, Halie Pruitt, Abigail Rhodes, Peter Swan, Markus Frederich

Marine Sciences Student Projects

Polar areas provide unique environments that, though they may seem extreme and uninhabitable, are flourishing with life. These areas around the North and South poles include deep oceans, shallow shelf regions, tundra, mountain ranges and vast glaciers. With the increasing effects of global climate change, a basic knowledge of polar regions is crucial to understand future impacts and implications. The purpose of this book is to give a broad background of polar biology, and also provide details on specific examples through case studies. Topics included throughout this book are: Ice, Life in Polar Regions, Species Interactions, and Anthropogenic Impacts.

The …

Why Come Back Home? Investigating The Proximate Factors That Influence Natal Philopatry In Migratory Passerines, Jenna A. Cava, Noah G. Perlut, Steven E. Travis

Environmental Studies Faculty Publications

Knowledge of which cues attract birds back to natal areas is important for conservation because the cues could be manipulated to attract breeders to source habitat or discourage breeders from settling in sink habitat. We examined the influence of intrinsic and extrinsic variables on natal philopatry using two metrics, short-distance natal dispersal and the probability of philopatry to the natal field, in two obligate-grassland bird species breeding in an agricultural landscape: the bobolink, Dolichonyx oryzivorus, and the Savannah sparrow, Passerculus sandwichensis. During 2002–2014, we detected 90 locally hatched Savannah sparrows and 129 locally hatched bobolinks breeding as adults …

Oligodendrocyte Ablation As A Tool To Study Demyelinating Diseases, Ahdeah Pajoohesh-Ganji, Robert H. Miller

Anatomy and Regenerative Biology Faculty Publications

Multiple sclerosis (MS) is an autoimmune mediated neurodegenerative disease characterized by demyelination and oligodendrocyte (OL) loss in the central nervous system and accompanied by local inflammation and infiltration of peripheral immune cells. Although many risk factors and symptoms have been identified in MS, the pathology is complicated and the cause remains unknown. It is also unclear whether OL apoptosis precedes the inflammation or whether the local inflammation is the cause of OL death and demyelination. This review briefly discusses several models that have been developed to specifically ablate oligodendrocytes in an effort to separate the effects of demyelination from inflammation.

Generation Of Organ-Conditioned Media And Applications For Studying Organ-Specific Influences On Breast Cancer Metastatic Behavior, Matthew M. Piaseczny, Graciella M. Pio, Jenny E. Chu, Ying Xia, Kim Nguyen, David Goodale, Alison Allan

Anatomy and Cell Biology Publications

Breast cancer preferentially metastasizes to the lymph node, bone, lung, brain and liver in breast cancer patients. Previous research efforts have focused on identifying factors inherent to breast cancer cells that are responsible for this observed metastatic pattern (termed organ tropism), however much less is known about factors present within specific organs that contribute to this process. This is in part because of a lack of in vitro model systems that accurately recapitulate the organ microenvironment. To address this, an ex vivo model system has been established that allows for the study of soluble factors present within different organ microenvironments. …

Associative Spike Timing-Dependent Potentiation Of The Basal Dendritic Excitatory Synapses In The Hippocampus In Vivo., Thomas K Fung, Clayton S Law, L Stan Leung

Physiology and Pharmacology Publications

Spike timing-dependent plasticity in the hippocampus has rarely been studied in vivo. Using extracellular potential and current source density analysis in urethane-anesthetized adult rats, we studied synaptic plasticity at the basal dendritic excitatory synapse in CA1 after excitation-spike (ES) pairing; E was a weak basal dendritic excitation evoked by stratum oriens stimulation, and S was a population spike evoked by stratum radiatum apical dendritic excitation. We hypothesize that positive ES pairing-generating synaptic excitation before a spike-results in long-term potentiation (LTP) while negative ES pairing results in long-term depression (LTD). Pairing (50 pairs at 5 Hz) at ES intervals of -10 …

Reducing Food And Packaging Waste Through Developing Edible Fruit Based Packaging Prototypes, Melanie Thatcher

Materials Engineering

Packaging is used to contain, preserve, protect, and advertise both manufactured and natural products. In 2013 it was reported that over thirty percent of solid waste in the United States was from packaging. One way to reduce the impact of packaging on the environment is to create a solution that is edible and sourced from a waste or secondary food product that is not currently being utilized. Food-contact packaging made from recycled materials must meet strict U.S. Food and Drug Administration (FDA) regulations to be utilized as raw material for packaging. Fruit pomace is a candidate material since it may …

Ion And Water Balance In Gryllus Crickets During The First Twelve Hours Of Cold Exposure., Lauren E Des Marteaux, Brent J Sinclair

Biology Publications

Insects lose ion and water balance during chilling, but the mechanisms underlying this phenomenon are based on patterns of ion and water balance observed in the later stages of cold exposure (12 or more hours). Here we quantified the distribution of ions and water in the hemolymph, muscle, and gut in adult Gryllus field crickets during the first 12h of cold exposure to test mechanistic hypotheses about why homeostasis is lost in the cold, and how chill-tolerant insects might maintain homeostasis to lower temperatures. Unlike in later chill coma, hemolymph [Na(+)] and Na(+) content in the first few hours of …

Reproductive Arrest And Stress Resistance In Winter-Acclimated Drosophila Suzukii., Jantina Toxopeus, Ruth Jakobs, Laura V Ferguson, Tara D Gariepy, Brent J Sinclair

Biology Publications

Overwintering insects must survive the multiple-stress environment of winter, which includes low temperatures, reduced food and water availability, and cold-active pathogens. Many insects overwinter in diapause, a developmental arrest associated with high stress tolerance. Drosophila suzukii (Diptera: Drosophilidae), spotted wing drosophila, is an invasive agricultural pest worldwide. Its ability to overwinter and therefore establish in temperate regions could have severe implications for fruit crop industries. We demonstrate here that laboratory populations of Canadian D. suzukii larvae reared under short-day, low temperature, conditions develop into dark 'winter morph' adults similar to those reported globally from field captures, and observed by us …