Life Sciences Commons^™

Cutting Waste In Tupper's Restaurant, Logan Salvator, Christien Merritt, Lily Amaral, Erik Dukes

Earth Day Symposium on Climate and Sustainablity

No abstract provided.

A New Centruroides Species And First Record Of C. Tapachulaensis Hoffmann, 1932 (Scorpiones: Buthidae) From Honduras, Luis F. De Armas, Alex M. Cubas-Rodríguez

Euscorpius

A new species of striped bark scorpions, Centruroides lenca sp. n. is described, based on both sexes, from the Pacayita Volcano Biological Reserve (2,385 m a. s. l.), Ocotepeque Department, in the southwestern Honduras. By its general pattern, the new species resembles C. thorellii (Kraepelin, 1891), from which it clearly differs by having stronger and very darker pedipalp chelae, minute subaculear tubercle and basal pectinal plate with a large central pit in the female, among other diagnostic characters. Also, Centruroides tapachulaensis Hoffmann, 1932 is recorded for the first time from Honduras, on the basis of two observed or collected specimens …

Developing An Unfolding-Incorporated Coarse-Grained Polymer Model For Fibrinogen To Study The Mechanical Behaviour, Vivek Sharma, Poulomi Sadhukhan

Northeast Journal of Complex Systems (NEJCS)

Fibrinogen is a protein found in blood that forms Fibrin polymer network to build a clot during wound healing process when there is a cut in the blood vessel. The fibrin fiber is highly stretchable and shows a complex mechanical properties. The fibrin monomer, Fibrinogen, has a very complex structure which is responsible for its unusual elastic behaviour. In this work, we focus on mechanism of unfolding of D-domain of Fibrinogen, and study its effect in the mechanical behaviour. We develop a coarse-grained (CG) bead-spring model for Fibrinogen which captures the unfolding of folded D-domains along with other necessary structural …

Nature’S Menu: The Science Behind The Raw Dog Food Movement And How To Safely Add Raw Meat To Your Dog’S Diet, Finn Bush, Kate Padilla, Grace Mynatt

The Agora

The raw dog food movement has become increasingly popular among the dog owner community, gaining attention primarily on social media platforms. This article discusses the motivations, ethics, and proper food safety involved in feeding canines raw meat. Despite common belief, dogs have deviating needs from their wolf ancestors, therefore, while feeding a raw meat diet looks more “natural” there are serious unintended consequences of improperly utilizing raw meat. This article takes a comprehensive look into what the benefits and drawbacks of raw feeding may be, how to be responsible if choosing to convert to the raw feed method, and overall …

Trenching And Compost Sustain Grain Yield Increases Over Nine Years On Deep Sands But At A Cost, David J.M. Hall, Tom J. Edwards

Grain and Other Field Crops Research Articles

Context. Crops grown on deep sands on the south coast of WA are limited by soil physical and chemical properties including compaction and poor nutrition. Aims. Crops grown on deep sands on the south coast of Western Australia are limited by soil physical and chemical properties including compaction and poor nutrition. Our aim was to determine what effects deep-placed organic amendments have on soil properties and crop production in a deep sand and whether such amendments are profitable. Methods. A long-term field trial was conducted over nine years (2015–2023) to investigate soil amendments including lime (0 and …

Ensemble Learning With Explainable Ai For Improved Heart Disease Prediction Based On Multiple Datasets, Shahid Mohammad Ganie, Pijush Kanti Dutta Pramanik, Zhongming Zhao

Faculty, Staff and Student Publications

Heart disease is one of the leading causes of death worldwide. Predicting and detecting heart disease early is crucial, as it allows medical professionals to take appropriate and necessary actions at earlier stages. Healthcare professionals can diagnose cardiac conditions more accurately by applying machine learning technology. This study aimed to enhance heart disease prediction using stacking and voting ensemble methods. Fifteen base models were trained on two different heart disease datasets. After evaluating various combinations, six base models were pipelined to develop ensemble models employing a meta-model (stacking) and a majority vote (voting). The performance of the stacking and voting …

Impacts Of Climate Change On Cannibalism And Disease Transmission In The Fall Armyworm, Kale Rougeau

LSU Master's Theses

Climate change may alter host-pathogen dynamics in terrestrial ecosystems due to rising global temperatures and carbon dioxide levels. Here, we examined cannibalism and disease transmission using the fall armyworm (Spodoptera frugiperda), an invasive agricultural pest, and its species-specific lethal baculovirus, Spodoptera frugiperda multiple nucleopolyhedrovirus (SfMNPV), under various potential challenges of climate change. We used three temperature treatments (cooler, optimal, warmer) based on the fall armyworm’s thermal performance curve to simulate a changing climate and four artificial diets with various protein-to-carbohydrate ratios (low, equal, high, standard) to manipulate resource quality from altered carbon dioxide levels. We found that higher …

Phytochemistry, Antioxidant And Cytotoxic Activities Of Hibiscus (Hibiscus Rosa-Sinensis) Extract On Mcf-7 Breast Cancer Cells, Ade Arsianti, Isma Zahira Suhaima, Steven Gill, Ajeng Megawati Fajrin, Lince Dameria Nadapdap, Norma Nur Azizah, Hiroki Tanimoto, Shun Hirota

Indonesian Journal of Medical Chemistry and Bioinformatics

Background: Breast cancer is the most common type of cancer in women with a very high mortality rate. This cancer is caused by uncontrolled growth of breast cells. Treatments for this malignancy are surgery, chemotherapy, and radiotherapy, however those methods can cause adverse effects and quite expensive. Complementary and alternative medicines (CAMs) are also used to support those main treatments, one of them is herbal medicine. Hibiscus rosa-sinensis is known to have various phytochemical components with antioxidant, antibacterial, anticancer, and analgesic activities. This study is aimed to determine the phytochemical composition, antioxidant activity and cytotoxicity of Hibiscus rosa-sinensis extract towards …

Maximizing Germination Of Three Native Plants For Rangeland Restoration And Urban Landscapes Through Seed Enhancements, Janetta Teichert

Theses and Dissertations

Native plants offer numerous ecological benefits and opportunities for both rangeland restoration and urban landscaping, making their integration essential for building sustainable ecosystems. They enhance soil health, promote pollinator activity, increase microbial diversity, and support both wildlife and livestock, all of which contribute to overall ecosystem resilience. A promising strategy to improve the use of native plants is the application of seed enhancement technologies, which can optimize seed germination, improve seedling establishment, and enhance overall plant success in challenging environments. These post-harvest seed treatments incorporate materials that improve seed performance, often through coatings composed of binders, fillers, and active ingredients. …

Biallelic Fgf4 Variants Linked To Thoracic Dystrophy And Respiratory Insufficiency, Laura M. Watts, Esther Kinning, Donald R. Latner, Marla Johnston, Jessica Patrick-Esteve, Gregory M. Cooper, Stephen R.F. Twigg, Alistair T. Pagnamenta, Jenny C. Taylor

School of Medicine Faculty Publications

The thoracic dystrophies are inherited skeletal conditions where abnormal embryonic development of the thoracic skeleton results in a narrow chest, pulmonary hypoplasia, and respiratory insufficiency, which can be severe or lethal. The majority of thoracic dystrophies are due to biallelic alterations in genes needed for normal ciliary function. However, despite the identification of over 20 genes as causal for the thoracic dystrophy phenotype, around 20% of patients remain without a molecular diagnosis. We present two unrelated families with a clinical diagnosis of thoracic dystrophy with associated respiratory insufficiency without a molecular diagnosis on previous genetic testing. Both harbor rare biallelic …

Swi/Snf Complex-Mediated Znf410 Cooperative Binding Maintains Chromatin Accessibility And Enhancer Activity, Siyuan Xu, Chuxuan Peng, Ren Ren, Haowen Lu, Han Zhao, Sijian Xia, Yijie Shen, Bin Xu, Haoyue Zhang, Xiaodong Cheng, Gerd A Blobel, Xianjiang Lan

Faculty, Staff and Student Publications

The clustering of multiple transcription factor binding sites (TFBSs) for the same TF has proved to be a pervasive feature of cis-regulatory elements in the eukaryotic genome. However, the contribution of binding sites within the homotypic clusters of TFBSs (HCTs) to TF binding and target gene expression remains to be understood. Here, we characterize the CHD4 enhancers that harbor unique functional ZNF410 HCTs genome wide. We uncover that ZNF410 controls chromatin accessibility and activity of the CHD4 enhancer regions. We demonstrate that ZNF410 binds to the HCTs in a collaborative fashion, further conferring transcriptional activation. In particular, three ZNF410 motifs …

Can The Discovery Of High-Impact Diagnostics Be Improved By Matching The Sampling Rate Of Clinical Diagnostics To The Frequency Domain Of Diagnostic Information?, Steven W Millward, Peng Wei, David Piwnica-Worms, Seth T Gammon

Faculty, Staff and Student Publications

Over the past 30 years, academic and industrial research investigators have developed molecular reporters to visualize cell death in complex biological systems. In parallel, clinical researchers, chemists, biochemists, and molecular biologists have endeavored to translate these molecular tools into clinical imaging agents. Despite these efforts, there are no clinically approved imaging methodologies with which to image cell death consistently and quantitatively. One reason may reside in the intrinsic mismatch between the sampling frequency of translational molecular imaging and the biochemical kinetics that define cell death. Beyond cell death imaging, many active research programs are now attempting to create translational diagnostic …

Vaccination Schedules Recommended By The Centers For Disease Control And Prevention: From Human-Readable To Machine-Processable, Xia Jing, Hua Min, Yang Gong, Mytchell A Ernst, Aneesa Weaver, Chloe Crozier, David Robinson, Dean F Sittig, Paul G Biondich, Samuil Orlioglu, Akash Shanmugan Boobalan, Kojo Abanyie, Richard D Boyce, Adam Wright, Christian Nøhr, Timothy D Law, Arild Faxvaag, Lior Rennert, Ronald W Gimbel

Faculty, Staff and Student Publications

Background: Reusable, machine-processable clinical decision support system (CDSS) rules have not been widely achieved in the medical informatics field. This study introduces the process, results, challenges faced, and lessons learned while converting the United States of America Centers for Disease Control and Prevention (CDC)-recommended immunization schedules (2022) to machine-processable CDSS rules.

Methods: We converted the vaccination schedules into tabular, charts, MS Excel, and clinical quality language (CQL) formats. The CQL format can be automatically converted to a machine-processable format using existing tools. Therefore, it was regarded as a machine-processable format. The results were reviewed, verified, and tested.

Results: We have …

Floating And Submerged Plants Of Utah: Pocket Field Guide, Kate Sinnott, Karin M. Kettenring

All Current Publications

This is a field guide to identifying floating and submerged plants of Utah. We include a page for each species and also a dichotomous key at the end for the pondweeds. Submerged and floating plant species play critical roles in aquatic ecosystems. They provide habitat to aquatic organisms, improve water clarity by trapping sediment, and absorb excess nutrients from the water column, among other vital services. However, they have been threatened and degraded by pollution, land conversion, and introductions of harmful species. Identifying native and non-native plants is an important component of tackling this degradation and promoting the conservation and …

Evidence-Based Alternative Pain Management Techniques For Chronic Pain, Alise Williams Condie, Ashley Yaugher, Kira Swensen, Maren Wright Voss

All Current Publications

Chronic pain and opioid use have become topics of importance as opioid overdose deaths have risen to epidemic proportions throughout the nation. Chronic pain lasts for long periods of time and can be caused by a past injury or have no known cause. Opioids have been utilized to treat pain in the past, but it has been discovered that opioids are better used to treat acute pain and not chronic pain. Opioids can have negative consequences including changes to the brain, depression, increased pain, constipation, sedation, and even death. This fact sheet reviews and explains some of the most successful …

Methamphetamine Effects On The Striatal Neuroimmune System, Hillary Adelaide Wadsworth

Theses and Dissertations

Dopamine is thought of as the reward molecule of the brain, and while it does deal with reward, it is also associated with motivation and crucial for controlled movement. There are two main dopaminergic systems in the brain, the nigrostriatal system, which originates in the substantia nigra compacta and projects dopamine into the dorsal striatum; and the mesolimbic system, which originates in the ventral tegmental area and projects dopamine into the nucleus accumbens. While the mesolimbic dopamine system deals with motivation and reward, the nigrostriatal pathway underlies movement. Microglia are the immune cells of the brain and are incredibly dynamic. …

Relationships Between Performance In The Frequency Speed Kick Test, Heart Rate Variability, And Body Composition In Amateur Muay Thai Fighters, Antonio Beira De Andrade Junior, Elena Marie Peixoto Ruthes De Andrade, Patrícia Dos Santos Vigário, Cesar Antonio Luchesa, João Eduardo De Azevedo Vieira, Igor Ramathur Telles De Jesus, Agnaldo Jose Lopes

International Journal of Exercise Science

International Journal of Exercise Science 18(6): 428-442, 2025. In martial arts, heart rate variability (HRV) measurements can potentially be used to assess injury risk and susceptibility to fatigue. Muay Thai uses the Frequency Speed of Kick Test (FSKT) to measure kick speed, but it is unknown whether better fitness results in improved autonomic function and body composition, which may affect athletic performance and recovery. We aimed to evaluate the correlations between FSKT, HRV, and body composition measures in amateur Muay Thai fighters. This is a cross-sectional study with 37 Muay Thai fighters. They underwent FSKT-10s and multiple FSKT to measure …

Building Climate Resilience Through Food Recovery, San Diego Regional Climate Collaborative, Alexander Pourfard, Aranza Ruvalcaba

San Diego Regional Climate Collaborative

In an effort to combat GHG emissions from food waste, California passed Senate Bill 1383 (SB 1383) into law in 2016. The bill contains key provisions aimed at increasing edible food recovery. By rescuing food that would otherwise go to the landfill, California entities have been able to help save precious food and advance sustainable solutions to address climate change in their local communities. Since the food recovery requirements took effect in January of 2022, over 217,000 tons of unsold food have been recovered annually, providing more than 700 million meals to food-insecure Californians.

A Geospatial Livestock-Carrying Capacity Model (Glcc) In The Akmola Oblast, Kazakhstan, Jiaguo Qi, Zihan Lin, Mark A. Weltz, Kenneth Spaeth, Gulnaz Iskakova

Biological, Geological, and Environmental Faculty Publications

Spatial disparities in rangeland conditions across Kazakhstan complicate field-based assessments of livestock-carrying capacity (LCC), a critical metric for the country's food security and economic planning. This study developed a geospatial livestock-carrying capacity (GLCC) modeling framework to quantify LCC spatio-temporal dynamics at the Oblast level, by integrating satellite-derived data on vegetation, water resources, and terrain with in situ measurements. By providing ground-truth observations and contextual detail, field-based measurements complement remote sensing data and help to validate estimates and improve the reliability of the GLCC model. The modeling framework was successfully applied and validated in a case study in the Akmola Oblast, …

Highly Targeted Metabolomics Coupled With Gene Expression Analysis By Rt–Qpcr Improves Beef Separation Based On Grass, Grain, Or Grape Supplemented Diet, Lucas Krusinski, Chloe Castanon, Rosalee S. Hellberg, Isabella C. F. Maciel, Muhammad Ahsin, Stephan Van Vliet, Jason E. Rowntree, Jennifer I. Fenton

Food Science Faculty Articles and Research

The objective of this study was to use a multi-omics (i.e., gene expression quantification, metabolomics, and fatty acid [FA] profiling) approach to separate and authenticate beef from three different dietary groups. In this 2-year study, Red Angus steers (n = 54) were randomly allocated to one of three treatments: (1) complex biodiverse pasture (GRASS), (2) total mixed ration (TMR) in feedlot (GRAIN), or (3) TMR in feedlot supplemented with 5% (dry matter) grapeseed extract for the last 30 days (GRAPE). FAs were measured by gas chromatography-mass spectrometry (GC–MS), secondary metabolites were identified using ultra-high-performance liquid chromatography tandem mass spectrometry …

Sustainable Forage Yield Improvement Through Perennial Grass–Legume Intercropping In Degraded Grasslands, Alina-Ștefania Stanciu

Turkish Journal of Agriculture and Forestry

Grasslands constitute one of the largest terrestrial biomes, providing essential ecosystem services such as biodiversity preservation, food production, and climate change mitigation. Globally, the desertification and degradation of grasslands have been accelerated by intensified land use and climate change. It is crucial to conserve and restore grasslands to address climate and biodiversity challenges. However, due to their diverse nature and undervalued benefits for humans, grasslands have often been overlooked in terms of preservation, conservation, and restoration compared to forests. In sustainable agriculture, intercropping grasses with legumes can enhance crop nutritional quality, increase productivity, and impact soil microbiological activity, ultimately leading …

Silage Yield And Quality Of Different Grass Pea (Lathyrus Sativus L.) Genotypes, Murat Azak, Erdem Gülümser

Turkish Journal of Agriculture and Forestry

This study aimed to determine the silage yield and quality of different 12 grass pea (Lathyrus sativus L.) genotypes (Gap Mavisi, İptaş, Karadağ, 1603, 2006, 2401, 4301, 4403, 5001, 6408, 6410, and S3). The trial was established in Bilecik’s ecological conditions in 2022 and 2023. It was carried out according to the randomized block design with four replications, and the plants were harvested at the full flowering stage. The harvested plants were chopped to 2 cm in size and ensiled in vacuum bags and left to ferment at 25 ± 2 °C for 45 days. The silage yield, pH, dry …

Effect Of Different Mulch Materials Applications On Weed Control, Plant Characteristics, And Yield In Garlic (Allium Sativum L.), Ayşe Usanmaz Bozhüyük

Turkish Journal of Agriculture and Forestry

This study was conducted in plots under controlled conditions in the Silvan district of Diyarbakır Province in 2023. The local garlic genotype (Allium sativum L.) from Diyarbakır was used as the plant material. Three different organic mulching materials (sawdust, pine, and straw) were applied at a thickness of 5 cm. The effects of these mulching materials on leaf number, root length, plant height, number of cloves per plant, plant density, bulb diameter, dry and fresh weight of garlic, dry and fresh weight of weeds, weed density, and yield were analysed. A total of 34 weed species from 15 families were …

Appraisal Of Germination Behavior And Activity In Newly Developed Rice Lines, Muhammad Usman Akbar, Muhammad Aqeel, Maryam M. Alomran, Ijaz Haider, Omar Mahmoud Al-Zoubi, Ali Noman

Turkish Journal of Agriculture and Forestry

Rice is a fundamental food source for more than half of the global population. This study evaluated the germination capacity of four rice lines [Sakh (V1), Campena (V2), Kharamana (V3), and Binicol (V5)] and one local variety, KSK-282 (V5). The findings revealed significant differences in the germination attributes among the rice lines. V1 and V3 showed superior germination performance, while V5 consistently exhibited the lowest values. The one-way analysis of variance (ANOVA) showed significant differences (p ≤ 0.05) across multiple parameters, including the coefficient of velocity of germination (CVG), germination index, mean germination rate (MGR), and synchronization index. A significant …

Early Survival And Growth Of Haloxylon Ammodendron Seedlings Under Irrigation In Arid Southern Tajikistan, Jieun Ahn, Gaeun Kim, Heejae Jo, Jieun Park, Youngjin Lee, Woo-Kyun Lee, Asia Khamzina, Yowhan Son

Turkish Journal of Agriculture and Forestry

Understanding plant drought responses is crucial for effective afforestation in drylands. This study aimed to investigate the effects of irrigation (31.25 mm seedling–1 every 45 days) on the early survival and growth of 3-month-old Haloxylon ammodendron seedlings at an afforestation site established in Tajikistan in 2021. In July 2022 and June 2023, surveys were conducted to compare seedling survival rates, height, root collar diameter (RCD), stem volume per unit area, and height-to-RCD ratio between irrigation (IR) and nonirrigation (NIR) treatments. The IR treatment increased survival rates in 2022 but not in 2023. By 2023, the IR treatment had increased the …

Digital Image Processing In Determining The Degree Of Turnip Yellows Virus Infection In Oilseed Rape, Alina-Ștefania Stanciu, Teodor Rusu, Alin Cristian Teușdea, Olimpia Smaranda Mintaș, Mihai Marcel Cărbunar, Cristian Oneț

Turkish Journal of Agriculture and Forestry

In agricultural crops, leaves play crucial roles in plant physiology, providing information on both the quantity and quality of future production. They also serve as indicators for diagnosing foliar diseases. Detecting plant diseases through image reading and computer vision in a specific format allows for both quantitative and qualitative studies, which is a key step in diagnosing diseases using images of leaves exhibiting symptoms specific to a pathogen. In this study, we present an approach that integrates digital image processing to assess the extent of turnip yellows virus (genus Polerovirus, family Solemoviridae) infection in oilseed rape. This study focuses on …

Exploring The Impact Of Planting Density And Environmental Variables On Maize Yield Productivity, Bojan Drašković, Bojan Mitrović, Velimir Mladenov, Ivana Mitrović, Milena Janković, Miroslav Zorić, Nenad Đurić

Turkish Journal of Agriculture and Forestry

Our study investigated the performance of various maize hybrids across diverse environments and planting densities, with the aim of understanding the complex interaction between genotypes, environmental conditions, and planting practices. A set of 13 experimental maize hybrids and two commercial check hybrids was tested over a 3-year period at eight different locations and under two distinct plant densities using a split-plot design. The results revealed significant variations in grain yield (GY) among hybrids across different environments, suggesting a substantial genotype-by-environment (G × E) interaction effect, particularly of the crossover type. This variability was attributed to fluctuations in environmental factors such …

Seasonal Dynamics Of Biomass Productivity, Combustion Quality, And Nutrient Translocation In Bulbous Canary Grass (Phalaris Aquatica L.) In A Semiarid Mediterranean Environment, Recep İrfan Nazli, Mi̇hrab Polat, Asi̇ye Sena Çavdar, Veyi̇s Tansi

Turkish Journal of Agriculture and Forestry

In order to achieve sustainable biomass production from perennial grasses, seasonal changes in biomass yield, combustion quality, and nutrient translocation need to be monitored in detail. In this study, the effects of six distinct disruptive harvests (November, January, March, May, July, and September) on the dry biomass yield, ash, moisture, and mineral contents, as well as the composition of the cell walls and the translocation of nutrients in bulbous canary grass, were investigated in a semiarid Mediterranean climate. The September harvest significantly reduced aboveground ash and mineral contents, while their contents in belowground biomass exhibited a significantly increasing trend from …

From Ancient Wisdom To Modern Medicine: The Cultural And Therapeutic Significance Of Ficus Carica L. (Moraceae) Extracts In Colorectal Cancer Treatment, Esra Hacimüftüoğlu, Azizeh Shadidizaji, Kağan Tolga Ci̇ni̇sli̇, Songül Karakaya

Turkish Journal of Agriculture and Forestry

Figs, mentioned in the Torah, the Bible, and the Quran, are of historical and cultural significance and have been used for medical treatment, prompting extensive research. Colorectal cancer (CRC), the second leading cause of cancer-related death worldwide, is expected to significantly increase in terms of mortality rates by 2035, with its progression closely linked to inflammatory processes. Cyclooxygenase 2 (COX-2), an enzyme encoded by the Ptgs2 gene, plays a key role in these processes by converting arachidonic acid into prostaglandin E2 (PGE2), a mediator of inflammation. In the present study, the potential of natural antiinflammatory compounds, specifically fumaric acid and …

Erratum To “Coriander (Coriandrum Sativum L.) Diversity Analysis: Insights From Germplasm Resources Leading To Crop Improvement”[Turkish Journal Of Agriculture And Forestry 48 (6) 2024 876-887], Amit Baran Sharangi, Solanki Bal, Anirban Maji, Tarun Kumar Upadhyay, Reem Binsuwaidan, Nawaf Alshammari, Nadiyah M. Alabdallah, Adesh Kolapkar, Mohd Saeed

Turkish Journal of Agriculture and Forestry

We hereby issue this erratum to address a concern regarding the affiliation section in the manuscript titled “Coriander (Coriandrum sativum L.) diversity analysis: insights from germplasm resources leading to crop improvement.” A correction is issued regarding the affiliation detail in the originally published manuscript. The affiliation number for the ninth author, Mohd SAEED, was listed as 7, whereas it should have been 6. To amend this, the affiliation section in the manuscript has been revised as follows:

Link to the original article: https://journals.tubitak.gov.tr/agriculture/vol48/iss6/6/