Life Sciences Commons^™

Artificial Reefs As Juvenile Fish Habitats In Marinas, Allison Patranella

HCNSO Student Theses and Dissertations

Coastal infrastructure has replaced many vital fish nursery habitats with structures designed without fully mitigating for the loss of the natural ecosystems. This thesis details research focused on the use of small, inexpensive, artificial reef modules as replacement juvenile fish habitat within marinas. My research hypothesis was that the placement of small, structurally complex artificial reef modules would increase fish abundance and species richness relative to unmodified marina seawalls. Non-destructive visual surveys of fishes were completed monthly for 14 months for 12 artificial reef sites and 12 control (unmodified) sites within the Nova Southeastern University Guy Harvey Oceanographic Center (NSU-GHOC) …

Reproductive Ecology Of Dragonfishes (Family: Stomiidae) In The Gulf Of Mexico, Alex D. Marks

HCNSO Student Theses and Dissertations

The most speciose group of fishes in the Gulf of Mexico is the dragonfishes (Family: Stomiidae). These fishes are dominant mesopelagic predators occurring throughout the world’s oceans, including the Antarctic seas. Little is known regarding their reproductive ecology, a consequence attributed to insufficient sample sizes of mature adults due to inadequacies of sampling gear; larger, sexually mature stomiid adults are more adept at net avoidance, thereby obfuscating synoptic reproductive biology studies. Between 2010-2011, the Offshore Nekton Sampling and Analysis Program was initiated in the northern Gulf of Mexico over all four seasons using a discrete-depth sampling system (MOCNESS) and a …

First Record Of The Non-Native Suckermouth Armored Catfish Hypostomus Cf. Niceforoi (Fowler 1943) (Siluriformes: Loricariidae) From Central America, Wilfredo A. Matamoros, Caleb D. Mcmahan, Carlos R. Mejia, Parker H. House, Jonathan W. Armbruster, Prosanta Chakrabarty

Occasional Papers of the Museum of Natural Science, Louisiana State University

We document the first record of Hypostomus cf. niceforoi in Central America. Two specimens of these suckermouth armored catfishes were collected in Lake Nicaragua (Nicaragua) and identified as H. cf. niceforoi. Hypostomus niceforoi is endemic to Andean streams of Colombia, Venezuela, Ecuador, and Peru. We hypothesize that its introduction in Central America is related to the aquarium trade, as is the case of other armored catfish species introductions.

A Comparative Study Of K-Spectrum-Based Error Correction Methods For Next-Generation Sequencing Data Analysis, Isaac Akogwu, Nan Wang, Chaoyang Zhang, Ping Gong

Faculty Publications

Background: Innumerable opportunities for new genomic research have been stimulated by advancement in high-throughput next-generation sequencing (NGS). However, the pitfall of NGS data abundance is the complication of distinction between true biological variants and sequence error alterations during downstream analysis. Many error correction methods have been developed to correct erroneous NGS reads before further analysis, but independent evaluation of the impact of such dataset features as read length, genome size, and coverage depth on their performance is lacking. This comparative study aims to investigate the strength and weakness as well as limitations of some newest k-spectrum-based methods and …

Nmrfx Processor: A Cross-Platform Nmr Data Processing Program, Michael Norris, Bayard Fetler, Jan Marchant, Bruce A. Johnson

Advanced Science Research Center

NMRFx Processor is a new program for the processing of NMR data. Written in the Java programming language, NMRFx Processor is a cross-platform application and runs on Linux, Mac OS X and Windows operating systems. The application can be run in both a graphical user interface (GUI) mode and from the command line. Processing scripts are written in the Python programming language and executed so that the low-level Java commands are automatically run in parallel on computers with multiple cores or CPUs. Processing scripts can be generated automatically from the parameters of NMR experiments or interactively constructed in the GUI. …

Fulleretic Well-Defined Scaffolds: Donor–Fullerene Alignment Through Metal Coordination And Its Effect On Photophysics, Derek E. Williams, Ekaterina A. Dolgopolova, Danielle C. Godfrey, Evgeniya D. Ermolaeva, Perry J. Pellechia Dr., Andrew B. Greytak Prof. Dr., Mark Smith Dr., Stanislav M. Avdoshenko, Dr., Alexey A. Popov Dr., Natalia B. Shustova Prof. Dr.

Faculty Publications

Herein, we report the first example of a crystalline metal–donor–fullerene framework, in which control of the donor–fullerene mutual orientation was achieved through chemical bond formation, in particular, by metal coordination. The 13C cross-polarization magic-angle spinning NMR spectroscopy, X-ray diffraction, and time-resolved fluorescence spectroscopy were performed for comprehensive structural analysis and energy-transfer (ET) studies of the fulleretic donor–acceptor scaffold. Furthermore, in combination with photoluminescence measurements, the theoretical calculations of the spectral overlap function, Förster radius, excitation energies, and band structure were employed to elucidate the photophysical and ET processes in the prepared fulleretic material. We envision that the well-defined fulleretic donor–acceptor …

Perseverance: Psychospiritual And Genetic Perspectives, Tony N. Jelsma, Arielle Johnston, Bruce Vermeer

Faculty Work Comprehensive List

Perseverance constitutes a quality that motivates humankind to press onward usually in the face of significant adversity and resistance. Perseverance is also important in the Christian life. The apostle Paul, using athletic training metaphors, frequently urges his readers to persevere in the faith, even describing his own life as a fight and a race (2 Tim.4:7). Yet, certain groups of people seem to possess a greater measure of perseverance than others have. We are therefore led to ask, “Can our ability to persevere be, in God’s providence, at least partly genetically influenced?”

The North American Geese: Their Biology And Behavior, Paul A. Johnsgard

Zea E-Books Collection

The eight currently recognized species of North American geese are part of a familiar group of birds collectively called waterfowl, all of which are smaller than swans and generally larger than ducks. They include the most popular of our aquatic gamebirds, with several million shot each year by sport hunters. Our two most abundant waterfowl, the Canada goose and snow goose, have populations collectively totaling about 15 million individuals. Like swans, the lifelong pairbonding of geese, their familial care, and prolonged social attachment to their offspring are legendary. Their seasonal migratory flights sometimes span thousands of miles, and the sight …

Individual Differences In Response Of Dorsomedial Prefrontal Cortex Predict Daily Social Behavior, Katherine E. Powers, Robert S. Chavez, Todd F. Heatherton

Dartmouth Scholarship

The capacity to accurately infer the thoughts and intentions of other people is critical for effective social interaction, and neural activity in dorsomedial prefrontal cortex (dmPFC) has long been linked with the extent to which people engage in mental state attribution. In this study, we combined functional neuroimaging and experience sampling methodologies to test the predictive value of this neural response for daily social behaviors. We found that individuals who displayed greater activity in dmPFC when viewing social scenes spent more time around other people on a daily basis. These findings suggest a specific role for the neural mechanisms that …

Smokejumper Obituary: Pappenhagen, Albert R. (Missoula 1947), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Long-Range Acoustic Interactions In Insect Swarms: An Adaptive Gravity Model, Dan Gorbonos, Reuven Ianconescu, James G. Puckett, Rui Ni, Nicholas T. Ouellette, Nir S. Gov

Physics and Astronomy Faculty Publications

The collective motion of groups of animals emerges from the net effect of the interactions between individual members of the group. In many cases, such as birds, fish, or ungulates, these interactions are mediated by sensory stimuli that predominantly arise from nearby neighbors. But not all stimuli in animal groups are short range. Here, we consider mating swarms of midges, which are thought to interact primarily via long-range acoustic stimuli. We exploit the similarity in form between the decay of acoustic and gravitational sources to build a model for swarm behavior. By accounting for the adaptive nature of the midges' …

Changes In Tursiops Truncatus Distribution And Behavior In The Drowned Cayes, Belize, And Correlation To Human Impacts, Jazmin Garcia

HCNSO Student Theses and Dissertations

Human interaction greatly influences the behavior and distribution of bottlenose dolphins (Tursiops truncatus). This project focuses on the distribution and behavior of bottlenose dolphins in the Drowned Cayes, Belize. Prior to the 2000s, the area was relatively undeveloped and undisturbed and had minimal human activity. Since the turn of the millennium, development and ecotourism activity has flourished in the area, increasing by more than 800,000 visitors from 1998-2006. Boat-based surveys were conducted in 2015 and were combined with previous survey data collected from 2005-2012 and compared to behavioral survey results from 1999-2000. Total dolphin observation time as a …

Breast Cancer Cell Proliferation Upon Exposure To Endocrine Disrupting Chemicals, Annie Kopera

Biology Summer Fellows

Endocrine Disrupting Chemicals (EDCs) can cause adverse health effects by tampering with the body’s endocrine system, which controls growth, development, and overall homeostasis. Bisphenols are a group of chemicals that are structurally similar; some are known endocrine disrupters. Bisphenol A (BPA) is a common chemical found in thermoplastics and epoxy resins, and can be found in products such as hard-plastic water bottles, the inside lining of food cans, medical equipment, dental sealants, and thermal receipt paper. The release of studies detailing the estrogenic activity of BPA prompted both scientists and consumers to campaign for a BPA-free movement. Producers looking for …

Mutation Selection On The Metabolic Pathway And The Effects On Protein Co-Evolution And The Rate Limiting Steps On The Tree Of Life, Katherine S. Porter

Mathematics Summer Fellows

Metabolic pathways are made of a series of reactions by enzymes at different speeds. These pathways include the rate limiting step, which is the slowest step that determines the rate of the overall reaction. To date, one study has examined the pathway of glycolysis and found no evidence of evolutionary stability of its rate limiting step. In addition, phylogenetic evidence has shown evolution in the pathway over time including gene duplication and positive selection within the pathway. This evidence suggests that there is coevolutionary selection on glycolysis. The evidence from this previous study is simulation-based. The Michaelis-Menten kinetics that describe …

Ciliate Codon Translator Program Manual, Quentin D. Altemose

Mathematics Summer Fellows

Understanding the evolutionary history of organisms allows us to better comprehend selective pressures and their effects on larger populations. In our study, we focused on analyzing the DNA of ciliate groups, which are single celled protozoans characterized by the presence of cilia on their outer membrane. We utilized the DNA of the organisms to analyze the changes in population genotype over time. We tested existing evolutionary models (designed to represent natural genetic variation over time in populations) against our data to identify the model with the best fit and likelihood. From the DNA and the evolutionary model with the highest …

Effects Of Shoreline Dynamics On Saltmarsh Vegetation, Shailesh Sharma, Joshua Goff, Ryan M. Moody, Ashley Mcdonald, Dorothy Byron, Kenneth L. Heck Jr., Sean Powers, Carl Ferraro, Just Cebrian

University Faculty and Staff Publications

We evaluated the impact of shoreline dynamics on fringing vegetation density at mid- and low-marsh elevations at a high-energy site in the northern Gulf of Mexico. Particularly, we selected eight unprotected shoreline stretches (75 m each) at a historically eroding site and measured their inter-annual lateral movement rate using the DSAS method for three consecutive years. We observed high inter-annual variability of shoreline movement within the selected stretches. Specifically, shorelines retrograded (eroded) in year 1 and year 3, whereas, in year 2, shorelines advanced seaward. Despite shoreline advancement in year 2, an overall net erosion was recorded during the survey …

Accuracy And Precision Of Quantitative 31p-Mrs Measurements Of Human Skeletal Muscle Mitochondrial Function, Gwenael Layec, J. R. Gifford, Joel D. Trinity, Corey R. Hart, Ryan S. Garten, Song-Young Park, Yann Le Fur, Eun-Kee Jeong, Russell S. Richardson

Health and Kinesiology Faculty Publications

Although theoretically sound, the accuracy and precision of 31P-magnetic resonance spectroscopy (31P-MRS) approaches to quantitatively estimate mitochondrial capacity are not well documented. Therefore, employing four differing models of respiratory control [linear, kinetic, and multipoint adenosine diphosphate (ADP) and phosphorylation potential], this study sought to determine the accuracy and precision of 31P-MRS assessments of peak mitochondrial adenosine-triphosphate (ATP) synthesis rate utilizing directly measured peak respiration (State 3) in permeabilized skeletal muscle fibers. In 23 subjects of different fitness levels, 31P-MRS during a 24-s maximal isometric knee extension and high-resolution respirometry in muscle fibers from the vastus lateralis was performed. Although significantly …

Can Twilight Reefs Usher In A New Dawn For Depauperate Shallow Coral Reefs?, Hunter Kg Noren

HCNSO Student Theses and Dissertations

As shallow reefs continue to decline, scientists are searching for the key to their persistence; as it turns out, they may just need to look deeper. Below many shallow tropical reefs, there exist healthy and more stable mesophotic coral reef communities. The ability of these reefs to act as a refuge for declining shallow populations has garnered significant interest among the scientific community; however, the reproductive and larval aspects necessary for this to occur are unknown. This study assesses the ability of deep reefs to act as a reproductive refuge for shallow counterparts by examining gametic compatibility, viability and larval …

The Effects Of Estrogen (E2), Bisphenol A (Bpa), Bisphenol S (Bps), And Bisphenol F (Bpf) On The Proliferation Of Mcf-7 Cells, Colleen Leahy

Biology Summer Fellows

Endocrine disrupting compounds (EDCs) are chemicals that disturb the endocrine system and exhibit adverse effects throughout the body. EDCs exert their effects by displaying hormone-like activity and can act as agonists or antagonists to normal hormonal function. Those EDCs that disturb the activity of estrogen are of particular interest. Estrogen, also known as 17β-estradiol, is a steroid hormone responsible for the development of the female sexual organs, secondary sexual characteristics, bone development and maintenance, and cardiovascular development. It has also been shown to play a role in the growth of certain breast cancers. Endocrine disrupting compounds that are structurally similar …

Fast Men Slow More Than Fast Women In A 10 Kilometer Road Race, Robert O. Deaner, Vittorio Addana, Rickey E. Carter, Michael J. Joyner, Sandra K. Hunter

Exercise Science Faculty Research and Publications

Background. Previous studies have demonstrated that men are more likely than women to slow in the marathon (footrace). This study investigated whether the sex difference in pacing occurs for a shorter race distance.

Materials & Methods. Data were acquired from the Bolder Boulder 10 km road race for the years 2008–2013, which encompassed 191,693 performances. There were two pacing measures, percentage change in pace of the first 3 miles relative to the final 3.2 miles and percentage change in pace of the first mile relative to the final 5.2 miles. Pacing was analyzed as a continuous variable and as two …

Model-Based Clustering With Certainty Estimation: Implication For Clade Assignment Of Influenza Viruses, Shunpu Zhang, Zhong Li, Kevin Beland, Guoquing Lu

Biology Faculty Publications

Background

Clustering is a common technique used by molecular biologists to group homologous sequences and study evolution. There remain issues such as how to cluster molecular sequences accurately and in particular how to evaluate the certainty of clustering results.

Results

We presented a model-based clustering method to analyze molecular sequences, described a subset bootstrap scheme to evaluate a certainty of the clusters, and showed an intuitive way using 3D visualization to examine clusters. We applied the above approach to analyze influenza viral hemagglutinin (HA) sequences. Nine clusters were estimated for high pathogenic H5N1 avian influenza, which agree with previous findings. …

Effects Of Pre-Acclimatization Applying The ‘‘Climb High And Sleep Low’’ Maxim: An Example Of Rapid But Safe Ascent To Extreme Altitude, Martin Burtscher, Robert Koch

Journal of Human Performance in Extreme Environments

Pre-acclimatization at a convenient high-altitude location may represent an appropriate method before climbing a more hostile target mountain. The aim of the present field report was to demonstrate the effectiveness of such pre-acclimatizing applying the ‘‘climb high sleep low’’ maxim for a subsequent rapid ascent to almost 7000 m. After some pre-acclimatization in the Alps the authors flew to Chile for further pre-acclimatization in the Aymara village of Putre (3650 m). From there they undertook sojourns up to altitudes of 5700 m within 3 days. Subsequently they went back to Arica (sea level) and climbed Ojos del Salado (6893 m) …

A R2r3-Myb Transcription Factor Regulates The Flavonol Biosynthetic Pathway In A Traditional Chinese Medicinal Plant, Epimedium Sagittatum, Wenjun Huang, A. B. M. Khaldun, Jianjun Chen, Chanjuan Zhang, Haiyan Lv, Ling Yuan, Ying Wang

Plant and Soil Sciences Faculty Publications

Flavonols as plant secondary metabolites with vital roles in plant development and defense against UV light, have been demonstrated to be the main bioactive components (BCs) in the genus Epimedium plants, several species of which are used as materials for Herba Epimedii, an important traditional Chinese medicine. The flavonol biosynthetic pathway genes had been already isolated from Epimedium sagittatum, but a R2R3-MYB transcription factor regulating the flavonol synthesis has not been functionally characterized so far in Epimedium plants. In this study, we isolated and characterized the R2R3-MYB transcription factor EsMYBF1 involved in regulation of the flavonol biosynthetic pathway …

Smokejumper Obituary: Phillips, James R. (Missoula 1967), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

"Beyond Words," Yes, But Also Beyond Numbers, Fred L. Bookstein

Animal Sentience

Safina’s fascinating series of fifty separate feuilletons tries to bridge a painful Methodenstreit in contemporary ethology mainly by an accumulation of anecdotes. Some deal with his own dogs, but most derive from reading or conversing with observers of a wider range of social mammals including elephants, wolves, apes, and whales. In spite of the many interruptions by travesties of the academic lifestyle and its literature, there is a point to be made, concerning the centrality of evidence about cooperative behavior styles, especially aspects of child-rearing, for the understanding of “what animals think and feel.” But Safina’s argument would be a …

Retention Of Mothers And Infants In The Prevention Of Mother-To-Child Transmission Of Hiv Programme Is Associated With Individual And Facility-Level Factors In Rwanda., Godfrey B Woelk, Dieudonne Ndatimana, Sally Behan, Martha Mukaminega, Epiphanie Nyirabahizi, Heather J. Hoffman, Placidie Mugwaneza, Muhayimpundu Ribakare, Anouk Amzel, B Ryan Phelps

Epidemiology Faculty Publications

OBJECTIVES: Investigate levels of retention at specified time periods along the prevention of mother-to-child transmission (PMTCT) cascade among mother-infant pairs as well as individual- and facility-level factors associated with retention.

METHODS: A retrospective cohort of HIV-positive pregnant women and their infants attending five health centres from November 2010 to February 2012 in the Option B programme in Rwanda was established. Data were collected from several health registers and patient follow-up files. Additionally, informant interviews were conducted to ascertain health facility characteristics. Generalized estimating equation methods and modelling were utilized to estimate the number of mothers attending each antenatal care visit …

1907 - Report Of The California State Agricultural Society For 1906

Miscellaneous Documents and Reports

1907 report on various subjects pertaining to the California State Agricultural Society in 1906, copies of some of the bulletins issued by the Society during the year, and a review of the physical conditions and characteristics of most of the counties of the State, with statistics showing the farm acreage, the assessable wealth, and industrial resources for those counties.

Economic Inequality And Changing Family Structure, Marianna Khachaturyan, E. Wesley F. Peterson

Cornhusker Economics

Rising economic inequality in the United States and around the world is widely seen as an important public policy issue. While academic social scientists have long been interested in the causes and consequences of inequality, the economic situation in the aftermath of the Great Recession of 2008-09 has stimulated increased public awareness of this issue along with an outpouring of books and articles aimed at understanding it. Explanations for the current increase in the level of inequality draw attention to technological change, globalization, the declining influence of labor unions, and public policies among many other causes. In addition, many analysts …

Maternity Colony Of Northern Long-Eared Myotis (Myotis Septentrionalis) In A Human-Made Structure In Nebraska, Rachel M. Stein, Jeremy A. White

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

The Northern Long-eared Myotis (Myotis septentrionalis) occurs across eastern North America, and its range extends west into the Great Plains of the United States. Summer roosts of M. septentrionalis in the Great Plains are not well documented. Herein we describe a maternity colony of M. septentrionalis using small, elevated structures (i.e., cabins) in southeastern Nebraska. Cabins were in a small parcel of upland deciduous forest about 1.6 km from the Missouri River. The maternity colony was observed roosting in a space between the outer and inner walls of three different cabins from 21 June to 8 October 2014. …

System-Aware Smart Network Management For Nano-Enriched Water Quality Monitoring, Bassem Mokhtar, Mohamed Azab, Nader Shehata, Mohamed Rizk

Biology Faculty Publications

This paper presents a comprehensive water quality monitoring system that employs a smart network management, nano-enriched sensing framework, and intelligent and efficient data analysis and forwarding protocols for smart and system-aware decision making. The presented system comprises two main subsystems, a data sensing and forwarding subsystem (DSFS), and Operation Management Subsystem (OMS). The OMS operates based on real-time learned patterns and rules of system operations projected from the DSFS to manage the entire network of sensors. The main tasks of OMS are to enable real-time data visualization, managed system control, and secure system operation. The DSFS employs a Hybrid Intelligence …