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Biological Sciences Newsletter - Fall 2016, Department Of Biological Sciences, East Tennessee State University

Biological Sciences Newsletters

No abstract provided.

Drug-Induced Nutrient Depletion, Rodney Richmond

Faculty Research ​and Publications

No abstract provided.

Urban Ecology In North Texas: Native Plants And Nitrogen Deposition, Michelle Lynn Green

Biology Dissertations - Archive

Globally, the human population continues to grow and move into urban areas causing a range of effects on local ecosystems. Elevated temperatures, altered hydrology, and higher concentrations of atmospheric pollutants in urban environments create novel conditions for resident organisms. My research focused on one particular aspect of human alteration to urban environments – nitrogen (N) deposition – and its effects on native plants across an urban to rural gradient in the southern Great Plains, North Texas (NTX), USA. Nitrogen oxides (NOx) – the product of combustion and precursor to nitrate deposition in precipitation – were significantly positively correlated with impervious …

Air Pollution, Pulmonary Oxidative Stress, And The Endothelin System In The Development Of Cardiovascular Injury., Jordan B. Finch

Electronic Theses and Dissertations

The goal of this project was to examine the role of endothelin-1 (ET-1) as a mediator in the pathway between air pollution exposure and the development of vascular injury. A human cohort and male mice (C57BL/6 and ecSOD-Tg) were used to evaluate changes in the ET-1 system in response to exposures of fine particulate matter (PM2.5). Human ET-1 levels were significantly associated with environmental factors and markers of vascular change, but were decreased with increased PM2.5. No association was seen between ET-1 and endothelial progenitor cells (EPCs) except for EPC-4, possibly indicating a regulatory relationship with this specific population. In …

Polyandry In The Absence Of Fitness Benefits In A Species With Female-Biased Sexual Size Dimorphism, Marie Claire Chelini, Eileen A. Hebets

Eileen Hebets Publications

Most studies exploring the evolution of female mating systems focus on species in which females are either monandric (mate with a single male) or highly polyandric (mate with multiple males), but less is understood about variation in mating decisions within a species. How and why do females of a single species decide whether or not to copulate with additional mates? In this study we attempt to answer this question in the highly dimorphic crab spider, Mecaphesa celer, whose females may be either monandric or polyandric. We tested three hypotheses: (1) a female’s decision to remate is based on sequential mate …

Effects Of Invasive Shrub Honeysuckle (Lonicera Maackii) And Forest Composition On Bird Communities In Woodland Stands., Katie Rae Lynch

Electronic Theses and Dissertations

Invasive species pose a threat to aquatic and terrestrial ecosystems by decreasing biodiversity (Didham et al. 2005). Amur bush honeysuckle (Lonicera maackii) has typically reduced native plant diversity and altered animal communities by influencing animal abundance and activity (Collier and Vankat 2002). This study was intended to determine whether honeysuckle density or other characteristics of forested stands influence avian diversity, whether impacts are seasonally dependent, and whether correlations exist between attributes of forested stands and honeysuckle density. In order to test the hypotheses, thirteen forest stands within the Louisville Metropolitan Area were selected. They had similar tree composition …

Purinergic Signaling During Porphyromonas Gingivalis Infection, C. Silva, A. C. Morandini, David M. Ojcius, R. Coutinho-Silva,

All Dugoni School of Dentistry Faculty Articles

Despite recent advances unraveling mechanisms of host–pathogen interactions in innate immunity, the participation of purinergic signaling in infection-driven inflammation remains an emerging research field with many unanswered questions. As one of the most-studied oral pathogens, Porphyromonas gingivalis is considered as a keystone pathogen with a central role in development of periodontal disease. This pathogen needs to evade immune-mediated defense mechanisms and tolerate inflammation in order to survive in the host. In this review, we summarize evidence showing that purinergic signaling modulates P. gingivalis survival and cellular immune responses, and discuss the role played by inflammasome activation and cell death during …

Structure-Function Analysis And Characterization Of Metalloproteins., Sen Yao

Electronic Theses and Dissertations

Metalloproteins are proteins that can bind at least one metal ion as a cofactor. They utilize metal ions for a variety of biological purposes, and are essential for all domains of life. Due to the ubiquity of metalloprotein’s involvement across these processes across all domains of life, how proteins coordinate metal ions for different biochemical functions is of great relevance to understanding the implementation of these biological processes. One of the most important aspects of metal binding is its coordination geometry (CG), which often implies functional activities. Most of the current studies are based on the assumption of previously reported …

Comparative Analyses Of Transcriptome Data From Beef Cattle Persistently Infected With Bovine Viral Diarrhea Virus, Sara Michelle Nilson

Department of Animal Science: Dissertations, Theses, and Student Research

Persistent infection (PI) with Bovine Viral Diarrhea Virus (BVDV) is a major source of economic loss for the livestock industry. Persistent infection occurs when a dam is exposed to the virus during 42 to 125 days of gestation and the virus is passed to the fetus without an adaptive immune response. These PI calves serve as continuous sources of infection to others. The identification of differences in expression of gene networks and/or genetic markers associated with infection could assist in the development of novel strategies to prevent, control, or treat BVDV. To examine the host response to PI, RNA-Seq data …

Genome-Wide Association Study For Feed Efficiency Traits Using Snp And Haplotype Models, Kashly Rene Schweer

Department of Animal Science: Dissertations, Theses, and Student Research

Feed efficiency has long been recognized for its economic importance in beef cattle production systems. Feed intake is not a routinely collected trait on-farm due to the expense of measuring individual feed intake. Identification of genomic regions associated with feed efficiency and its component traits would be advantageous for selection programs. The objective of this study was to uncover genomic regions associated with average daily gain (ADG) and average daily feed intake (ADFI) through genome-wide association studies (GWAS) with SNP and haplotype Bayesian models. Phenotypes of ADG and ADFI along with genotypes from the BovineSNP50v2 array from crossbred steers and …

Evaluation Of Hematological And Serum Biochemical Profiles Associated With The Supplementation Of Zilpaterol Hydrochloride To Feedlot Heifers, Sara Elizabeth Sieren

Department of Animal Science: Dissertations, Theses, and Student Research

Supplementation of zilpaterol hydrochloride (ZH; Zilmax^®) to cattle has been suggested to have a negative impact on well-being of cattle. The objective of this study was to evaluate the hematological and serum biochemical profiles in feedlot heifers supplemented with ZH in a minimal stress environment. Heifers were randomly assigned to one of two treatment groups: Control (CON no ZH), or ZH (supplemented with ZH at 8.33mg/kg of feed on a DM basis). The study was conducted over a period of 25 d (-2 to 23), with three serum collection periods [-2 to 4 d (ZH supplementation began on …

The Effects Of Zinc Supplementation From Two Sources On Egg Quality And Bone Health In Laying Hens, Kelli Marie Martin

Department of Animal Science: Dissertations, Theses, and Student Research

The objective of this study was to compare zinc sources and levels of supplementation on laying hen performance. Bovan White Leghorn hens were fed one of six dietary treatments in a 2x3 factorial arrangement consisting of two zinc sources (Availa®Zn or zinc sulfate) and three levels (40, 80, or 120 ppm). Treatments were randomly assigned to 48 cages with five hens/cage. Blocks provided eight replicates/treatment. Hens were housed in a tiered manure belt housing system providing 97.2 cm²/hen. Hens were given 110 g/hen/day of feed ad libitum. Feed intake, egg production, egg weights, egg components, eggshell strength, body …

Evaluation Of The Metabolic Response, Blood Chemistry Profile, And Cardiac Morphology Of Beef Heifers Supplemented With Zilpaterol Hydrochloride Followed By An Endocrine Induced Stress Challenge, Joe O. Buntyn

Department of Animal Science: Dissertations, Theses, and Student Research

The objective of this study was to determine the metabolic, stress, hematology, organ weights, histology and cardiac anatomical features of beef heifers supplemented with zilpaterol hydrochloride (ZH) when exposed to a corticotropin-releasing hormone (CRH) and arginine vasopressin (VP) challenge. Crossbred heifers (n = 20; 556 ± 7 kg BW) were randomized into two treatment groups: 1) Control (CON): no ZH, and 2) Zilpaterol (ZIL): supplemented with ZH at 8.33 mg / kg (DM basis). The ZIL group was supplemented ZH for 20 d, with a 3-d withdrawal period. On d 24, heifers received an intravenous bolus of CRH (0.3 µg …

Effects Of Salt And Nitrite Concentration On The Shelf Life Of Deli-Style Ham, Regan Elise Stanley

Department of Animal Science: Dissertations, Theses, and Student Research

Deli-style hams were manufactured to measure the effects of salt and nitrite concentration on shelf life and physicochemical characteristics. Three replications of deli-style ham treatments were manufactured in a 3 x 4 factorial arrangement of salt concentration (0.7%, 1.4%, or 2.1%, meat block basis) and nitrite concentration and source (0 ppm, 100 ppm or 200 ppm sodium nitrite, SN, or 100 ppm sodium nitrite equivalent from pre-converted celery juice powder, CP; Veg Stable 506, Florida Food Products). Salt concentration, water activity, cook yield, and texture profile analysis (TPA) were measured on w 0. Color, pH, residual nitrite, and aerobic and …

Development Of Terminal And Maternal Economic Selection Indices In Beefmaster Cattle, Kathleen Pearl Ochsner

Department of Animal Science: Dissertations, Theses, and Student Research

In the design of economic selection indices, the relative importance of traits in the breeding objective is reflected by their relative economic weighting. The objective of this study was to develop two economic selection indices for Beefmaster cattle: one for a terminal production system and one for a maternal production system. The terminal index was developed assuming bulls are mated to mature cows with all resulting progeny harvested. The maternal index was developed assuming bulls are mated to a combination of heifers and mature cows, with resulting progeny retained as replacements or sold at weaning.

National average prices from 2010 …

Impact Of Finishing Diets With De-Oiled Distillers Grains Or Antioxidant Containing Supplement On Beef Shelf Life, Katherine I. Domenech-Pérez

Department of Animal Science: Dissertations, Theses, and Student Research

In its entirety this dissertation intended to address the impact of feeding several forms of de-oiled corn distillers grains plus solubles and the effect of supplementing OmniGen-AF as a potential antioxidant source for extending beef shelf life. In study one we learned that despite the de-oiling process, greater inclusion levels (65%, DM basis) of de-oiled wet distillers grains plus solubles (WDGS) causes an increase in polyunsaturated fatty acids (PUFA) similar to the levels obtained with full-fat WDGS. Lower inclusion levels (35 and 50%, DM basis) of de-oiled WDGS have intermediate PUFA content in comparison to 65% de-oiled WDGS, full-fat WDGS …

Forage News [2016-08], Department Of Plant And Soil Sciences, University Of Kentucky

Forage News

• Eden Shale Farm to Host KFGC Field Day Sept. 13th
• Forage News Quote of the Month: "Forages, particularly the Grasses, are the most important plants on the face of the earth"
• Sugarcane Aphid Found in Kentucky
• UK Breeder Develops New Tall Fescue Variety
• Featured Publication: Stockpiling for Fall and Winter Pasture (AGR-162)
• Planting Brassicas and Cereals for Fall Forage
• Choose Varieties Wisely

Gene Expression Differences In Hybrids At Beginning Of Speciation Continuum, Long A. Nicholas

Biology Theses - Archive

The formation of new species results from reproductive isolation, or the barrier to successful mating between organisms of divergent populations. The degree of reproductive isolation can be measured by the reduction in fitness of hybrid offspring that can result from incompatibilities between the genotypes of each parent. In this study, genetic incompatibilities arising at the earliest stage of speciation are examined between intraspecific hybrids in which an effectively sterile hybrid phenotype termed “still” is observed at ~50% frequency in crosses between divergent populations of Tribolium castaneum. Timing and magnitude of gene expression regulation is examined at four stages of development, …

Snp-Based High Density Genetic Map And Mapping Of Btwd1 Dwarfing Gene In Barley, Xifeng Ren, Jibin Wang, Lipan Liu, Genlou Sun, Chengdao Li, Hong Luo, Dongfa Sun

Publications

A high-density linkage map is a valuable tool for functional genomics and breeding. A newly developed sequence-based marker technology, restriction site associated DNA (RAD) sequencing, has been proven to be powerful for the rapid discovery and genotyping of genome-wide single nucleotide polymorphism (SNP) markers and for the high-density genetic map construction. The objective of this research was to construct a high-density genetic map of barley using RAD sequencing. 1894 high-quality SNP markers were developed and mapped onto all seven chromosomes together with 68 SSR markers. These 1962 markers constituted a total genetic length of 1375.8 cM and an average of …

Estimating Carrying Capacity Of Cool-Season Pastures In Kentucky Using Web Soil Survey, S. Ray Smith, Krista Lea

Agriculture and Natural Resources Publications

The stocking rate of livestock on a pasture is known to have a significant impact on both forage productivity and financial profitability of an operation. Too many animals in a field results in overgrazing and the need to provide costly supplemental feed; too few animals results in underutilized forages and therefore lost income. While many factors influence how many animals a farm can carry, soil type has a major influence and should be considered when purchasing, leasing, planning, or managing livestock on pastures.

Mitigating Prevalence And Persistence Of L. Monocytogenes Using Novel Sanitation Strategies In Delis, Susan Rose Hammons

Open Access Dissertations

Ready-to-eat (RTE) deli meats sliced at retail are predicted to cause 83% of deli meat-associated listeriosis cases annually. While L. monocytogenes is commonly found in delis (55-90%), environmental prevalence varies by store (0-40%). Study 1 evaluated efficacy of 10 standardized SSOPs by testing 28 food and non-food contact surfaces for L. monocytogenes over 6 months in 30 retail delis. Intervention strategies employed in this study significantly decreased L. monocytogenesprevalence on FCS and NFCS in stores with moderate prevalence (0.5%, 0.8% reduction). However, we found that L. monocytogenes could persist despite implementation of SSOP control strategies. Study 2 assessed an …

The Phenology And Compatibility Of Hazelnut (Corylus Avellana) Cultivars In Tennessee, Ben Nigel Heard

Honors Theses

The European hazelnut (Corylus avellana L.), is an important temperate zone nut tree species for which there is an expanding demand worldwide. Historically, the Eastern filbert blight disease (EFB), caused by the ascomycete fungus Anisogramma anomala, has prevented commercial hazelnut growing in Tennessee. As part of a UTC hazelnut cultivar trial, EFB resistant hazelnut cultivars and numbered selections from Oregon State University and Burnt Ridge Nursery were planted in 2003 at Smith Farm in Ooltewah, TN. Hazelnut trees are wind-pollinated, dichogamous, and self-incompatible, which means they are not self-fertile, their male and female blossoms may open at different times, and …

The Role The N-Terminal Domain Plays In Spidroin Assembly, Krystal Audrey Cadle

All Dissertations

One of the most interesting biomaterials known to man is spider silk. These fibers, composed primarily of protein, show beneficial mechanical and biological properties that have many uses in medical and industrial fields. Spider silk proteins (spidroins) are composed of three core components that consists of a C-terminal domain (CTD), repeat domain (R), and N-terminal domain (NTD). The NTD and CTD are highly conserved and are believed to form “multimeric strands” that make up spider silk. Although it is known that the NTD undergoes a conformational change that results in stable homodimer formation at acidic pH , the way in …

Ruminant Supplementation Of Gluconeogenic Substrates Via Drinking Water, Gabriela Volpi-Lagreca

All Dissertations

Dark cutting or high pH meat is found in all meat species, inducing significant losses to the meat industry. Dark cutting meat is a direct consequence of low muscle glycogen at slaughter, which affects the normal acidification of meat during rigor development, hence, the ultimate pH remains high. The ultimate pH of the meat has a great influence on certain meat quality parameters, such as color, water holding capacity, and tenderness. An animal exposed to stress previous to slaughter may significantly depletes its glycogen reserves. This situation leads to a high ultimate pH if the animal is slaughtered before it …

Tackling Adverse Environment—Molecular Mechanism Of Plant Stress Response And Biotechnology Tool Development, Ning Yuan

All Dissertations

Abiotic and biotic stresses such as drought, salt, nutrition starvation, and pathogen infection are major factors threatening our agricultural production. With the rapidly increasing population and limited arable land area, genetic engineering of crops for new products with more stable and higher yield than conventional cultivars under adverse environment provides a powerful new tool for use in developing novel GMOs (Genetically Modified Organisms) to feed the large population in the immediate future. To develop novel GMOs with enhanced performance under adverse conditions, we need first to understand molecular mechanisms underlying plant stress response. To better understand how signaling transduction pathway …

Relationship Between Morphogenesis And Secretion In The Filamentous Fungus Aspergillus Nidulans, Lakshmi Preethi Yerra

School of Biological Sciences: Dissertations, Theses, and Student Research

Filamentous fungi have a long history in biotechnology for the production of food ingredients, pharmaceuticals and enzymes. The advancements made in recent years have earned filamentous fungi such as Aspergillus species a dominant place among microbial cell factories. Although the model fungus A. nidulans has been extensively studied, the genetic and regulatory networks that underlie morphogenesis and development have yet to be fully characterized. The Rho GTPases (Cdc42 and RacA) are one of the most important regulators of the morphogenetic processes among diverse eukaryotic organisms. Although the functions of these GTPases are relatively well-characterized, little is known about their …

Characterization Of The Role Of Host And Dietary Factors In The Establishment Of Bacteria In The Gastrointestinal Tract, Janina A. Krumbeck

School of Biological Sciences: Dissertations, Theses, and Student Research

Probiotic bacteria and synbiotics are used as therapeutic and prophylactic agents. The majority of probiotic and synbiotic applications contain bacterial strains that are allochthonous to the human gastrointestinal (GI) tract. Accordingly, many bacterial strains do not survive digestion, or are not capable of persisting and competing the resident gut microbiota, and are therefore washed out of the GI tract shortly after the treatment is discontinued. This might reduce the health effects of these treatments. Therefore, research is needed to address the ecological challenges that probiotic strains encounter in the GI tract in order to develop probiotic regimens. Determining which ecological …

Phenotypic Evolution Of Middle American Tree Frogs: Allometric Effects, And Larval And Adult Evolutionary Independence, David Antonio SáNchez

Biology Dissertations - Archive

The shape and size of vertebrates is shaped by adaptive processes and phylogenetic relationships, and constrained by mechanical and developmental constraints. We quantified the diversity of the skull using geometric morphometrics, studied the shape of the oral disc of tadpoles, constructed and corrected phylogenies of the Middle American Tree frogs, a monophyletic lineage with highly diverse shapes and sizes distributed in Central and North America, and temperate Eurasia. Four major clades are identified in the Middle American Tree frogs. We measured allometric effects and assessed the independence between the evolutionary history of the larval and the adult phenotype in two …

How Do Oil, Gas, And Water Interact Near A Subsea Blowout?, Scott A. Socolofsky, E. Eric Adams, Claire B. Paris-Limouzy, Di Yang

C-IMAGE Publications

Oil and gas from a subsea blowout shatter into droplets and bubbles that rise through the water column, entraining ambient seawater and forming a plume. Local density stratification and currents eventually arrest this rising plume, and the entrained water, enriched with dissolved hydrocarbons and some of the smaller oil droplets, forms one or more subsurface intrusion layers. Beyond the plume and intrusion layer(s), droplets and bubbles advect and diffuse by local currents and dissolve and biodegrade as they rise to the surface, where they are transported by wind and waves. These processes occur over a wide range of length scales …

Methods Of Oil Detection In Response To The Deepwater Horizon Oil Spill, Helen K. White, Robyn N. Conmy, Ian R. Macdonald, Christopher M. Reddy

C-IMAGE Publications

Detecting oil in the northern Gulf of Mexico following the Deepwater Horizon oil spill presented unique challenges due to the spatial and temporal extent of the spill and the subsequent dilution of oil in the environment. Over time, physical, chemical, and biological processes altered the composition of the oil, further complicating its detection. Reservoir fluid, containing gas and oil, released from the Macondo well was detected in surface and subsurface environments. Oil monitoring during and after the spill required a variety of technologies, including nimble adaptation of techniques developed for non-oil-related applications. The oil detection technologies employed varied in sensitivity, …