Life Sciences Commons^™

Lipophosphoglycans From Leishmania Amazonensis Strains Display Immunomodulatory Properties Via Tlr4 And Do Not Affect Sand Fly Infection, Paula M. Nogueira, Rafael R. Assis, Ana C. Torrecilhas, Elvira M. Saraiva, Natália L. Pessoa, Marco A. Campos, Eric F. Marialva, Cláudia M. Ríos-Velasquez, Felipe A. Pessoa, Nágila F. Secundino, Jerônimo N. Rugani, Elsa Nieves, Salvatore J. Turco, Maria N. Melo, Rodrigo P. Soares

Molecular and Cellular Biochemistry Faculty Publications

The immunomodulatory properties of lipophosphoglycans (LPG) from New World species of Leishmania have been assessed in Leishmania infantum and Leishmania braziliensis, the causative agents of visceral and cutaneous leishmaniasis, respectively. This glycoconjugate is highly polymorphic among species with variation in sugars that branch off the conserved Gal(β1,4)Man(α1)-PO₄ backbone of repeat units. Here, the immunomodulatory activity of LPGs from Leishmania amazonensis, the causative agent of diffuse cutaneous leishmaniasis, was evaluated in two strains from Brazil. One strain (PH8) was originally isolated from the sand fly and the other (Josefa) was isolated from a human case. The ability of …

Habitat Suitability Modeling For The Mississippi Sandhill Crane, Grus Canadensis Pulla, Linda C. Salande

LSU New Orleans Theses and Dissertations

In this study, I modeled the suitability of habitat on the Mississippi Sandhill Crane National Wildlife Refuge for the federally endangered Mississippi Sandhill Crane (Grus Canadensis pulla). Habitat type and suitability changed over time due to seasonality of vegetation and succession in the absence of burning. Cranes used highly suitable habitat more in the non-growing than in the growing season, and may have been more constrained by resource availability during winter months. Cranes used some less-suitable areas including cypress drains, which provide roosting sites, and supplemental food plots. The mismatch between predicted quality and crane use suggests that …

Phylogenetic Relationships And Evolution Of Snakes, Alex Figueroa

LSU New Orleans Theses and Dissertations

Snakes represent an impressive evolutionary radiation of over 3,500 widely-distributed species, categorized into 515 genera, encompassing a diverse range of morphologies and ecologies. This diversity is likely attributable to their distinctive morphology, which has allowed them to populate a wide range of habitat types within most major ecosystems. In my first chapter, I provide the largest-yet estimate of the snake tree of life using maximum likelihood on a supermatrix of 1745 taxa (1652 snake species + 7 outgroup taxa) and 9,523 base pairs from 10 loci (5 nuclear, 5 mitochondrial), including previously unsequenced genera (2) and species (61). I then …

Comparing Methods Of Euthanasia And Gill Culture For Hypoxia Research On The Gulf Killifish, Fundulus Grandis, Kristina M. Farragut

LSU New Orleans Theses and Dissertations

Aquatic hypoxia, or low dissolved oxygen, is a growing environmental concern and has detrimental effects on many fishes. Research on fish responses to hypoxia includes whole animal studies as well as organ culture systems. In this thesis, the gulf killifish, Fundulus grandis, was used to determine the interaction between hypoxic exposure and four common euthanasia techniques on selected blood and gill variables and to develop an in vitro gill incubation system. Euthanasia techniques had differential effects on blood and gill, with the common fish anesthetic MS-222 having the greatest effects, but none altered the response to hypoxia. During the …

3d Printing Of A Polymer Bioactive Glass Composite For Bone Repair, Caroline Murphy, Krishna C. R. Kolan, M. Long, Ming-Chuan Leu, Julie A. Semon, D. E. Day

Mechanical and Aerospace Engineering Faculty Research & Creative Works

A major limitation of synthetic bone repair is insufficient vascularization of the interior region of the scaffold. In this study, we investigated the 3D printing of adipose derived mesenchymal stem cells (AD-MSCs) with polycaprolactone (PCL)/bioactive glass composite in a single process. This offered a three-dimensional environment for complex and dynamic interactions that govern the cell’s behavior in vivo. Borate based bioactive (13-93B3) glass of different concentrations (10 to 50 weight %) was added to a mixture of PCL and organic solvent to make an extrudable paste. AD-MSCs suspended in Matrigel was extruded as droplets using a second syringe. Scaffolds measuring …

App Regulates Microglial Phenotype In A Mouse Model Of Alzheimer's Disease, Gunjan D. Manocha, Angela M. Floden, Keiko Rausch, Joshua A. Kulas, Brett A. Mcgregor, Lalida Rojanathammanee, Kelley R. Puig, Kendra L. Puig, Sanjib Karki, Michael R. Nichols, Diane C. Darland, James E. Porter, Colin K. Combs

Biology Faculty Publications

Prior work suggests that amyloid precursor protein (APP) can function as a proinflammatory receptor on immune cells, such as monocytes and microglia. Therefore, we hypothesized that APP serves this function in microglia during Alzheimer's disease. Although fibrillar amyloid β (Aβ)-stimulated cytokine secretion from both wild-type and APP knock-out (mAPP−/−) microglial cultures, oligomeric Aβ was unable to stimulate increased secretion from mAPP−/− cells. This was consistent with an ability of oligomeric Aβ to bind APP. Similarly, intracerebroventricular infusions of oligomeric Aβ produced less microgliosis in mAPP−/− mice compared with wild-type mice. The mAPP−/− mice crossed to an APP/PS1 transgenic mouse line …

Phytochemicals In Animal Health; Diet Selection And Trade-Offs Between Costs And Benefits, Juan J. Villalba, Morgane Costes-Thire, Cecile Ginane

Nutrition, Dietetics, and Food Sciences Faculty Publications

Many plant tissues contain plant secondary compounds (PSC), which have long been recognised as defensive chemicals that deter herbivory via their toxic effects. However, herbivores may also benefit from including PSC into their diets. Plant-derived phenolics, terpenes and alkaloids have antiparasitic properties and sesquiterpene lactones have antibacterial, antifungal and antiparasitic properties. These actions are in part a consequence of the negative actions that PSC exert across several trophic levels, including the bacteria, parasites and fungi that inhabit herbivores’ bodies. Given the dual action, toxin and medicine, it is possible to hypothesise that self-selection of PSC by herbivores should occur when …

Integrative Approach For Inference Of Gene Regulatory Networks Using Lasso-Based Random Featuring And Application To Psychiatric Disorders, Dongchul Kim, Mingon Kang, Ashis Biswas, Chunyu Liu

Faculty Articles

Background Inferring gene regulatory networks is one of the most interesting research areas in the systems biology. Many inference methods have been developed by using a variety of computational models and approaches. However, there are two issues to solve. First, depending on the structural or computational model of inference method, the results tend to be inconsistent due to innately different advantages and limitations of the methods. Therefore the combination of dissimilar approaches is demanded as an alternative way in order to overcome the limitations of standalone methods through complementary integration. Second, sparse linear regression that is penalized by the regularization …

Comprehensive Audiometric Analysis Of Hearing Impairment And Tinnitus After Cisplatin-Based Chemotherapy In Survivors Of Adult-Onset Cancer., Robert D. Frisina, Heather E. Wheeler, Sophie D. Fossa, Sarah L. Kerns, Chunkit Fung, Howard D. Sesso, Patrick O. Monahan, Darren R. Feldman, Robert Hamilton, David J. Vaughn, Clair J. Beard, Amy Budnick, Eileen M. Johnson, Shirin Ardeshir-Rouhani-Fard, Lawrence H. Einhorn, Steven E. Lipshultz, M. Eileen Dolan, Lois B. Travis

Bioinformatics Faculty Publications

PURPOSE:

Cisplatin is widely used but highly ototoxic. Effects of cumulative cisplatin dose on hearing loss have not been comprehensively evaluated in survivors of adult-onset cancer.

PATIENTS AND METHODS:

Comprehensive audiological measures were conducted on 488 North American male germ cell tumor (GCT) survivors in relation to cumulative cisplatin dose, including audiograms (0.25 to 12 kHz), tests of middle ear function, and tinnitus. American Speech-Language-Hearing Association criteria defined hearing loss severity. The geometric mean of hearing thresholds (0.25 to 12 kHz) summarized overall hearing status consistent with audiometric guidelines. Patients were sorted into quartiles of hearing thresholds of age- and …

Nebraska Livestock Expansion Policies, J. David Aiken

Cornhusker Economics

Livestock expansion in Nebraska is often contentious. Supporters of livestock expansion accomplished a major policy objective in the 2016 legislative session with the adoption of LB176 which authorizes swine processors to contract with producers to grow processor-owned hogs. In addition, the draft LB106 livestock site assessment zoning matrix was released this summer. This newsletter explores the possible impact of these developments for expanded livestock production in Nebraska.

Evaluation Of The Red Imported Fire Ant Foraging Behavior, Gabriela Harvey

Department of Entomology: Distance Master of Science Projects

Introduction

The Coachella Valley Mosquito and Vector Control District (CVMVCD) examined the activity of red imported fire ants, Solenopsis invicta, from May 2015 until May 2016. Ant abundance was measured to determine the most effective time for vector control technicians to conduct surveillance and to make treatments to control the ants. Since ants adapt and exploit their environment, the purpose of the study was to understand when the ants forage, so that the CVMVCD can manage the ants effectively. During the summer months, the temperatures can get up to as high as 120°F (49°C). These high temperatures are not …

Unprecedented Disease-Related Coral Mortality In Southeastern Florida, William F. Precht, Brooke Erin Gintert, Martha L. Robbart, Ryan Fura, Robert Van Woesik

Ocean Engineering and Marine Sciences Faculty Publications

Anomalously high water temperatures, associated with climate change, are increasing the global prevalence of coral bleaching, coral diseases, and coral-mortality events. Coral bleaching and disease outbreaks are often inter-related phenomena, since many coral diseases are a consequence of opportunistic pathogens that further compromise thermally stressed colonies. Yet, most coral diseases have low prevalence (<5%), and are not considered contagious. By contrast, we document the impact of an extremely high-prevalence outbreak (61%) of white-plague disease at 14 sites off southeastern Florida. White-plague disease was observed near Virginia Key, Florida, in September 2014, and after 12 months had spread 100 km north and 30 km south. The disease outbreak directly followed a high temperature coral-bleaching event and affected at least 13 coral species. Eusmilia fastigiata, Meandrina meandrites, and Dichocoenia stokesi were the most heavily impacted coral species, and were reduced to <3% of their initial population densities. A number of other coral species, including Colpophyllia natans, Pseudodiploria strigosa, Diploria labyrinthiformis, and Orbicella annularis were reduced to <25% of their initial densities. The high prevalence of disease, the number of susceptible species, and the high mortality of corals affected suggests this disease outbreak is arguably one of the most lethal ever recorded on a contemporary coral reef.

App Regulates Microglial Phenotype In A Mouse Model Of Alzheimer's Disease, Gunjan Manocha, Angela Floden, Keiko Rausch, Joshua Kulas, Brett Mcgregor, Lalida Rojanathammanee, Kelley Puig, Kendra Puig, Sanjib Karki, Michael Nichols, Diane Darland, James Porter, Colin Combs

Chemistry & Biochemistry Faculty Works

Prior work suggests that amyloid precursor protein (APP) can function as a proinflammatory receptor on immune cells, such as monocytes and microglia. Therefore, we hypothesized that APP serves this function in microglia during Alzheimer's disease. Although fibrillar amyloid β (Aβ)-stimulated cytokine secretion from both wild-type and APP knock-out (mAPP−/−) microglial cultures, oligomeric Aβ was unable to stimulate increased secretion from mAPP−/− cells. This was consistent with an ability of oligomeric Aβ to bind APP. Similarly, intracerebroventricular infusions of oligomeric Aβ produced less microgliosis in mAPP−/− mice compared with wild-type mice. The mAPP−/− mice crossed to an APP/PS1 transgenic mouse line …

Inducing Application Of Interdisciplinary Frameworks: Experiences From The Domains Of Information Literacy And Responsible Conduct Of Research, Anne E. Leonard, Jean E. Hillstrom

Publications and Research

Constructivist frameworks for information literacy and research ethics can be developed and nurtured in the context of an interdisciplinary course. Using the frameworks of two disciplines, students went on an experiential journey in support of ethics foundations through guest lectures and active learning exercises. This study describes the development and content of the responsible conduct of research and information literacy modules and discusses the role of each in an interdisciplinary course. Learning goals for both modules were evaluated by examining student responses in a free-writing exercise at the end of the semester, concluding with a discussion of the structural and …

Is Cortex Necessary?, Sean Allen-Hermanson

Animal Sentience

A key contention of Klein & Barron (2016) is that consciousness does not depend on cortical structures. A critical appraisal suggests they have overestimated the strength of their evidence.

Who Is A Person? Whoever You Want It To Be, Gwen J. Broude

Animal Sentience

Rowlands provides an expanded definition of personhood that preserves the requirement of unity of mental life from the orthodox definition but argues that implicit unity of mind is sufficient for conferring personhood. This allows more or all animals to be considered persons. Implicit unity of mind may be a bridge too far for those who endorse the orthodox account of personhood, and for good reasons. More fundamentally, who gets to decide what personhood entails or that personhood per se matters to such other issues as who receives legal or moral status and consideration? Perhaps we should worry less about definitions …

U.S. Drought Monitor, August 9, 2016, Richard Tinker

United States Agricultural Commodities in Drought Archive

Drought map of U.S. for August 9, 2016 (8/9/16) plus: U.S. crop areas experiencing drought (map), Approximate percentage of crop located in drought, by state (bar graph), Percent of crop area located in drought, past 52 weeks (line graph) for: Corn, Soybeans, Hay, Cattle, Winter wheat.

External Morphology Of The Eggs Of Asplanchnopus Multiceps (Schrank, 1793) (Rotifera): Solving The 150-Year-Old Case Of Mistaken Identity, Elizabeth S. Wurdak

Biology Faculty Publications

This report calls into question the practice of passing along illustrations and anatomical descriptions from the literature without scrutiny. An error made by Leydig (Zeischrift für wissenschaftliche Zoologie 6:1–120, 1854) in characterizing the egg of Asplanchnopus multiceps was perpetuated in authoritative publications (Hyman, The Invertebrates: Acanthocephala, Aschelminthes, and Entoprocta. The pseudocoelomate Bilateria, McGraw-Hill Book Company, New York, 1951; Voigt, Rotatoria: Die Rädertiere Mitteleuropas, Gebrüder Borntraeger, Berlin-Nikolassee, 1957; Ruttner-Kolisko, Plankton rotifers, biology and taxonomy supplementary edition of Die Binnengewässer 26, Stuttgart, 1974; Koste, Rotatoria: Die Rädertiere Mitteleuropas begründet von Max Voigt. Monogononta 2. Auflage neubearbeitet von Walter Koste, Gebrüder Borntraeger, Berlin, …

Rapid Surface Water Volume Estimations In Beaver Ponds, Daniel J. Karran, Cherie J. Westbrook, Joseph M. Wheaton, Carol A. Johnston, Angela Bedard-Haughn

Natural Resource Management Faculty Publications

Beaver ponds are surface water features that are transient through space and time. Such qualities complicate the inclusion of beaver ponds in local and regional water balances, and in hydrological models, as reliable estimates of surface water storage are difficult to acquire without time and labour intensive topographic surveys. A simpler approach to overcome this challenge is needed, given the abundance of the beaver ponds in North America, Eurasia and southern South America. We investigated whether simple morphometric characteristics derived from readily available aerial imagery or quickly measured field attributes of beaver ponds can be used to approximate surface water …

Autophagic Turnover Of Inactive 26s Proteasomes In Yeast Is Directed By The Ubiquitin Receptor Cue5 And The Hsp42 Chaperone, Richard S. Marshall, Fionn Mcloughlin, Richard D. Vierstra

Biology Faculty Research

Highlights

• The yeast 26S proteasome is degraded by Atg8-mediated autophagy
• Nitrogen starvation and inactivation stimulate proteaphagy via distinct pathways
• Proteasome inhibition is accompanied by extensive ubiquitylation of the complex
• Proteaphagy engages the Cue5 autophagy receptor and the Hsp42 chaperone

Summary

The autophagic clearance of 26S proteasomes (proteaphagy) is an important homeostatic mechanism within the ubiquitin system that modulates proteolytic capacity and eliminates damaged particles. Here, we define two proteaphagy routes in yeast that respond to either nitrogen starvation or particle inactivation. Whereas the core autophagic machineries required for Atg8 lipidation and vesiculation are essential for both routes, the upstream Atg1 …

Prophylactic Bacteriophage Administration More Effective Than Post-Infection Administration In Reducing Salmonella Enterica Serovar Enteritidis Shedding In Quail, Mosab Ahmadi, M. Amir Karimi Torshizi, Shaban Rahimi, John J. Dennehy

Publications and Research

Infections caused by Salmonella bacteria, often through poultry products, are a serious public health issue. Because of drawbacks associated with antibiotic prophylaxis, alternative treatments are sought. Bacterial viruses (bacteriophages) may provide an effective alternative, but concerns remain with respect to bacteriophage stability and effectiveness. To this end, we assessed the stability of a novel bacteriophage isolated from poultry excreta, siphovirus PSE, and its effectiveness in reducing Salmonella enterica serovar Enteritidis colonization in vitro and in vivo. Moreover, we sought to determine how the timing (prophylactic or therapeutic) and route (oral gavage or vent lip) of PSE administration impacted its effectiveness. …

Dominance Hierarchies In Horses: Comparing And Contrasting Different Methods For Assessing Hierarchies, Devyn Bailey

Ursidae: The Undergraduate Research Journal at the University of Northern Colorado

Understanding animal social structures is imperative when it comes to the care, housing and handling of large herd animals. Knowing how hierarchies are structured, along with environmental and physiological aspects that may affect them, will allow owners and breeders to house and care for their animals. The aim of my study was to better understand two methods used to assess dominance hierarchies in horses, Equus caballus, and to predict which method would be more useful for owners housing domestic horses. I designed an experiment where I compared a structured method, the paired feeding test, with behavioral observations from the …

The Floral Charms Of Saint John’S: A Survey Of Botanical Communities, Stephen G. Saupe, Paul Melchior

Headwaters

Saint John’s is a “landscape paradise” in central Minnesota. Although no complete checklist of vegetation exists for the campus, various surveys reveal a diverse flora. This floral wealth is the result of several terrestrial biomes converging on campus — prairie, savanna, deciduous forest, and coniferous forest — as well as diverse aquatic habitats including both lakes and wetlands. A 56-acre restored prairie at the entrance of Saint John’s is dominated by big bluestem and little bluestem. A savanna has been restored to the north and east of the Gemini Lakes and is characterized by bur oaks scattered among prairie grasses …

Monitoring The Charge Distribution During Proton And Sodium Ion Conduction Along Chains Of Water Molecules And Protein Residues, Steve Scheiner

Chemistry and Biochemistry Faculty Publications

Quantum calculations are used to determine the level of delocalization of the charge of a cation as it translates along a chain of water molecules or glycine residues. Charge dispersal is monitored via the molecular electrostatic potential and the dipole moment of the entire system. The positive charge is largely localized on the water molecule on which the proton is situated, but becomes more intense and extended as the proton moves along the chain. The positive charge is more delocalized in protonated polyglycine, where it extends over at least an entire residue. Displacement of the proton along the chain intensifies …

1925, Soil Survey Of The Salinas Area, California, E. J. Carpenter And Stanley W. Cosby

State and Federal Documents Relating to Monterey and San Luis Obispo Counties

The 1925 reports describes the area surveyed, the climate, agriculture, soils, irrigation and drainage of the Salinas Valley. The report was prepared by E. J. Carpenter, United States Department of Agriculture and Stanley W. Cosby, University of California. The report covers the greater part of the area previously addressed in the Lapham and Heileman 1901 soil survey report.

1957 May - Fifth Supplement To Bulletin 52-A, Salinas Basin Investigation, Basic Data 1954-1955

State and Federal Documents Relating to Monterey and San Luis Obispo Counties

The May 1957 fifth supplement to the Salinas Basin Investigation, Bulletin 52-A, contains basic hydrologic data for the period of spring 1954 through fall 1955.

Lingnan Gardeners Newsletter (No. 21) = 嶺南彩園通訊 (第21期), Lingnan Gardeners, Kwan Fong Cultural Research And Development Programme, Lingnan University

Lingnan Gardeners Newsletter 嶺南彩園通訊

Ending of the Heat 處暑

Ex-Post Livestock Diseases, And Pastoralists' Averting Decisions In Tanzania, Mazbahul Ahamad

Department of Agricultural Economics: Dissertations, Theses, and Student Research

Little is known about the factors affecting pastoralists’ livestock vaccination decisions. In this thesis, we use a novel survey-based dataset on pastoralists living in the Ruaha landscape in Tanzania, and employ several econometric approaches to identify the factors affecting pastoralists’ decision-making process about livestock vaccination when disease occurrence and severity, vaccination and healthcare access costs and other related variables are known. Results from binary choice models that account for excess zeros indicate that socially and economically active households are more likely to vaccinate their livestock. The results also identify positive marginal effects of illness incidence and having wage earners and …

Modeling PCo2 Variability In The Gulf Of Mexico, Zuo Xue, Ruoying He, Katja Fennel, Wei-Jun Cai, Steven Lohrenz, Wei-Jen Huang, Hanqin Tian, Wei Ren, Zhengchen Zang

Plant and Soil Sciences Faculty Publications

A three-dimensional coupled physical–biogeochemical model was used to simulate and examine temporal and spatial variability of sea surface pCO₂ in the Gulf of Mexico (GoM). The model was driven by realistic atmospheric forcing, open boundary conditions from a data-assimilative global ocean circulation model, and observed freshwater and terrestrial nutrient and carbon input from major rivers. A 7-year model hindcast (2004–2010) was performed and validated against ship measurements. Model results revealed clear seasonality in surface pCO₂ and were used to estimate carbon budgets in the Gulf. Based on the average of model simulations, the GoM was a …

Are Insects Sentient?, Michael Tye

Animal Sentience

I comment on the methodology used by Klein & Barron for dealing with the question of insect sentience and I briefly make a proposal of my own. Once it is granted that insects are sentient, a further question arises: which insects are subject to which states of sentience? Do insects feel pain, for example? If so, which ones? On the further question, I note, Klein & Barron have nothing to say.