Life Sciences Commons^™

Nmr And Structural Data For Connexin 32 And Connexin 26 N-Terminal Peptides, Yuskel Batir, Thaddeus A. Bargiello, Terry L. Dowd

Publications and Research

In this article we present 1H and 13C chemical shift assignments, secondary structural propensity data and normalized temperature coefficient data for N-terminal peptides of Connexin 26(Cx26), Cx26G12R and Cx32G12R mutants seen in syndromic deafness and Charcot Marie Tooth Disease respectively, published in “Structural Studies of N-Terminal Mutants of Connexin 26 and Connexin 32 Using 1HNMR Spectroscopy” (Y.Batir,T.A.Bargiello,T.L.Dowd, 2016)[1]. The mutation G12R affects thestructure of both Cx26 and Cx32 peptides differently. We present data from secondary structure propensity chemical shift analysis which calculates a secondary structurepropensity (SSP) score for both disordered or folded peptides and proteins using the difference between the …

Krause, Janet L. (Fa 872), Manuscripts & Folklife Archives

Folklife Archives Finding Aids

Finding aid only for Folklife Archives Project 872. Paper titled: “Fishing Lore of Hadley Community.” Project includes survey sheets with brief descriptions of various aspects of fishing including methods, gear, terminology, sayings and beliefs. Sheets include a brief description of each topic, informant’s name and some illustrations.

Population Characteristics Of Human-Commensal Rodents Present In Households From Mérida, Yucatán, México, Jesús Alonso Panti-May, Silvia F. Hernández-Betancourt, Marco A. Torres-Castro, Carlos Machaín-Williams, Nohemi Cigarroa-Toledo, Lorenzo Sodá, Gabriela López-Manzanero, Josué R. Meza-Sulú, Victor M. Vidal-Martínez

MANTER: Journal of Parasite Biodiversity

Anthropocommensal rodents live in close proximity to humans in many habitats around the world. They are a threat to public health because of the pathogens they carry. Recent studies in Mérida, Yucatán, México, have shown that commensal rodents harbor potential zoonotic pathogens such as bacteria, helminths, and viruses. In this study, we describe reproductive and demographic parameters of house mice and black rats present in households from Mérida, Yucatán, México, a municipality located in a tropical region in southern México. Rodents were trapped in 142 households within the municipality of Mérida from 2011 to 2014. A total of 832 rodents …

Grnsight: A Web Application And Service For Visualizing Models Of Small- To Medium-Scale Gene Regulatory Networks, Kam D. Dahlquist, John David N. Dionisio, Ben G. Fitzpatrick, Nicole A. Anguiano, Anindita Varshneya, Britain J. Southwick, Mihir Samdarshi

Biology Faculty Works

GRNsight is a web application and service for visualizing models of gene regulatory networks (GRNs). A gene regulatory network (GRN) consists of genes, transcription factors, and the regulatory connections between them which govern the level of expression of mRNA and protein from genes. The original motivation came from our efforts to perform parameter estimation and forward simulation of the dynamics of a differential equations model of a small GRN with 21 nodes and 31 edges. We wanted a quick and easy way to visualize the weight parameters from the model which represent the direction and magnitude of the influence of …

Smokejumper Obituary: Wilson, Paul A. (Missoula 1950), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Winter Activity Of Myotis Septentrionalis: Role Of Temperature In Controlling Emergence From A Hibernaculum, Cliff A. Lemen, Patricia Freeman, Jeremy A. White

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

We acoustically monitored a small mine in southeastern Nebraska known to be a hibernaculum for the Northern Long-eared Myotis (Myotis septentrionalis) for two winters (2014-2015 and 2015-2016). Some M. septentrionalis emerged on nights with mild temperatures throughout both winters. There was an 89% probability of detecting this species when temperature at sunset was >5°C. Our results indicated that acoustical surveys outside mines or caves in winter, particularly on nights with mild temperatures, are an effective method of identifying hibernacula of M. septentrionalis and potentially other species without disturbing individuals by entering the hibernaculum or by netting individuals as …

Temporal And Spatial Distribution Of Enterobius Vermicularis (Nematoda: Oxyuridae) In The Prehistoric Americas, Karl J. Reinhard, Adauto Araújo, Johnica J. Morrow

Karl Reinhard Publications

Investigations of Enterobius sp. infection in prehistory have produced a body of data that can be used to evaluate the geographic distribution of infection through time in the Americas. Regional variations in prevalence are evident. In North America, 119 pinworm positive samples were found in 1,112 samples from 28 sites with a prevalence of 10.7%. Almost all of the positive samples came from agricultural sites. From Brazil, 0 pinworm positive samples were found in 325 samples from 7 sites. For the Andes region, 22 pinworm positive samples were found in 411 samples from 26 sites for a prevalence of 5.3%. …

“Cellular Basis Of Consciousness”: Not Just Radical But Wrong, Brian Key

Animal Sentience

Reber (2016) attempts to resuscitate an obscure and outdated hypothesis referred to as the “cellular basis of consciousness” that was originally formulated by the author nearly twenty years ago. This hypothesis proposes that any organism with flexible cell walls, a sensitivity to its surrounds, and the capacity for locomotion will possess the biological foundations of mind and consciousness. Reber seeks to reduce consciousness to a fundamental property inherent to individual cells rather than to centralised nervous systems. This commentary shows how this hypothesis is based on supposition, false premises and a misunderstanding of evolutionary theory. The cellular basis of consciousness …

The Person And The Self As Social Accomplishment, Leslie Irvine

Animal Sentience

Rowlands (2016) presents a compelling argument for extending personhood to nonhuman animals. Sociological conceptions of the person also do not require that animals meet the elusive standard of self-awareness. Sociological ideas on selfhood support the claims about pre-reflective awareness and extend the requisite experiences to animals.

The Evolutionary History Of Consciousness, Eirik Søvik, Clint Perry

Animal Sentience

Klein & Barron argue that insects are capable of subjective experience, i.e., sentience. Whereas we mostly agree with the conclusion of their arguments, we think there is an even more important message to be learned from their work. The line of reasoning opened by Klein & Barron proves instructive for how neuroscientists can and should explore the biological phenomenon of consciousness.

The Off-Label Use, Utility And Potential Value Of Tdcs In The Clinical Care Of Particular Neuropsychiatric Conditions, Marom Bikson, Bhaskar Paneri, James Giordano

Publications and Research

No abstract provided.

Use Of Several Natural Products From Selected Nicotiana Species To Prevent Black Shank Disease In Tobacco, Antoaneta B. Kroumova, Ivan Artiouchine, George J. Wagner

Kentucky Tobacco Research and Development Center Faculty Publications

Black shank is a major annual disease threat to all types of tobacco worldwide. It is caused by the fungus Phytophthora parasitica var. nicotianae (PPN). The major tobacco growing areas in US - Kentucky, Tennessee and North Carolina can experience devastating losses, reaching in some fields up to 100%. Thus far, the main approaches to control this disease have been creation of resistant varieties, fungicide treatments, and crop rotation. Some fungicides are reported to have negative effects on the environment. The goal of this work was to test the antifungal activity of several natural products that are synthesized by certain …

Beginnings: Physics, Sentience And Luca, Carolyn A. Ristau

Animal Sentience

According to Reber’s model, Cellular Basis of Consciousness (CBC), sentience had its origins in a unicellular organism and is an inherent property of living, mobile organic forms. He argues by analogy to basic physical forces which he considers to be inherent properties of matter; I suggest that they are instead the stuff of scientific investigation in physics. I find no convincing argument that sentience had to begin in endogenously mobile cells, a criterial attribute of the originator cell(s)for sentience according to CBC. Non-endogenously mobile cells, (i.e., plants or precursors) in a moving environment would suffice. Despite my concerns and the …

Might Insects Experience Pain?, Robert W. Elwood

Animal Sentience

The aim of this commentary is to expand the discussion about subjective experience to other arthropods, notably crustaceans. Various species of crustaceans show responses consistent with their feeling pain. Hermit crabs also show prolonged investigation of new shells. They clearly attend to and integrate information from a wide variety of sources that enable them to evaluate the quality of the new shell relative to their current shell. These observations too are consistent with their having subjective experience.

Nitrogen Application Decision-Making Under Climate Risk In The U.S. Corn Belt, Benjamin M. Gramig, Raymond Massey, Seong Do Yun

Department of Agricultural Economics Faculty Publications

Nitrogen fertilizer is one of the most important inputs to corn production and farmers manage their crop by deciding how much to apply, when to apply it and how to apply it to maximize their yields and resulting profit. There is risk inherent in crop fertility manage- ment because once nitrogen is applied to the soil it is no longer immobile and cropland is subject to loss of this costly input under different weather conditions. Days suitable for field work, a farm’s machinery set, and weather conditions determine when field prepara- tion and planting activities are completed each year. This …

Explaining Success And Failure In The Commons: The Configural Nature Of Ostrom’S Institutional Design Principles, Jacopo A. Baggio, Allain J. Barnett, Irene Perez-Ibarra, Ute Brady, Elicia Ratajczyk, Nathan Rollins, Cathy Rubiños, Hoon C. Shin, David J. Yu, Rimjhim Aggarwal, John M. Anderies, Marco A. Janssen

Environment and Society Faculty Publications

Governing common pool resources (CPR) in the face of disturbances such as globalization and climate change is challenging. The outcome of any CPR governance regime is the influenced by local combinations of social, institutional, and biophysical factors, as well as cross-scale interdependencies. In this study, we take a step towards understanding multiple-causation of CPR outcomes by analyzing 1) the co-occurrence of Destign Principles (DP) by activity (irrigation, fishery and forestry), and 2) the combination(s) of DPs leading to social and ecological success. We analyzed 69 cases pertaining to three different activities: irrigation, fishery, and forestry. We find that the importance …

An Iterative Approach To Large-N Case Studies: Insights From Qualitative Analysis Of Quantitative Inconsistencies, Allain J. Barnett, Jacopo A. Baggio, Hoon C. Shin, David J. Yu, Irene Perez-Ibarra, Cathy Rubiños, Ute Brady, Elicia Ratajczyk, Nathan Rollins, Rimjhim Aggarwal, John M. Anderies, Marco A. Janssen

Environment and Society Faculty Publications

Large-N comparative studies have helped common pool resource scholars gain general insights into the factors that influence collective action and governance outcomes. However, these studies are often limited by missing data, and suffer from the methodological limitation that important information is lost when we reduce textual information to quantitative data. This study was motivated by nine case studies that appeared to be inconsistent with the expectation that the presence of Ostrom’s Design Principles increases the likelihood of successful common pool resource governance. These cases highlight the limitations of coding and analysing Large-N case studies. We examine two issues: 1) the …

Challenges And Opportunities In Coding The Commons: Problems, Procedures, And Potential Solutions In Large-N Comparative Case Studies, Elicia Ratajczyk, Ute Brady, Jacopo A. Baggio, Allain J. Barnett, Irene Perez-Ibarra, Nathan Rollins, Cathy Rubiños, Hoon C. Shin, David J. Yu, Rimjhim Aggarwal, John M. Anderies, Marco A. Janssen

Environment and Society Faculty Publications

On-going efforts to understand the dynamics of coupled social-ecological (or more broadly, coupled infrastructure) systems and common pool resources have led to the generation of numerous datasets based on a large number of case studies. This data has facilitated the identification of important factors and fundamental principles which increase our understanding of such complex systems. However, the data at our disposal are often not easily comparable, have limited scope and scale, and are based on disparate underlying frameworks inhibiting synthesis, meta-analysis, and the validation of findings. Research efforts are further hampered when case inclusion criteria, variable definitions, coding schema, and …

A Global Edna Comparison Of Freshwater Bacterioplankton Assemblages Focusing On Large-River Floodplain Lakes Of Brazil, Michael Tessler, Mercer R. Brugler, Rob Desalle, Rebecca Hersch, Luiz Felipe M. Velho, Bianca T. Segovia, Fabio A. Lansac-Toha, Michael J. Lemke

Publications and Research

With its network of lotic and lentic habitats that shift during changes in seasonal connection, the tropical and subtropical large-river systems represent possibly the most dynamic of all aquatic environments. Pelagic water samples were collected from Brazilian floodplain lakes (total n = 58) in four floodpulsed systems (Amazon [n = 21], Araguaia [n = 14], Paraná [n = 15], and Pantanal [n = 8]) in 2011–2012 and sequenced via 454 for bacterial environmental DNA using 16S amplicons; additional abiotic field and laboratory measurements were collected for the assayed lakes.We report here a global comparison of the bacterioplankton makeup of freshwater …

1949 Salinas Basin Investigation, Basic Data Used In Bulletins 52, 52-A And 52-B

State and Federal Documents Relating to Monterey and San Luis Obispo Counties

The 1949 Salinas Basin Investigation - Basic Data publication presented the previously unpublished basic data supporting the analyses and conclusions in Bulletins 52, 52-A and 52-B. The documents includes well descriptions in Salinas Valley, water levels at wells, quality of water, water levels at wells, quality of water, well logs, and maps depicting lands irrigated in Salinas Valley in 1945.

1904, Water Resources In Salinas, United States Department Of Interior, Homer Hamlin

State and Federal Documents Relating to Monterey and San Luis Obispo Counties

The 1904 report pertains largely to that portion of the Salinas Valley lying within the boundaries of Monterey County. It describes the geography, topography, geology, climate factors and hydrology of the region discussing the methods of irrigation and irrigation systems, the extent of underground waters, and the possibility of extending irrigation by utilization of surface streams and impounding of flood waters.

1950 Salinas Basin Investigation - Basic Data (1948-1950)

State and Federal Documents Relating to Monterey and San Luis Obispo Counties

This supplemental report contains basic data collected between September 1948 and April 1950 on measurements of water levels at wells and quality of water checks as it related to the saline intrusion into groundwater located in the lower Salinas Basin, previously presented in Bulletins 52, 52-A and 52-B.

2015, Salinas And Carmel River Basins Study

State and Federal Documents Relating to Monterey and San Luis Obispo Counties

An April 2015 collaborative study conducted by the U.S. Department of Interior, Bureau of Reclamation, Monterey Peninsula Water Management District and Monterey County Water Resources Agency to evaluate future water supply and demand imbalances in changing climate and to develop potential adaptation strategies to meet future demands in the Salinas and Carmel River Basins. Objectives of the study include: 1) Improved regional collaboration in the development of an integrated modeling tool; 2) Identify risks and potential impacts of climate change on future water resources (supply & demand); and 3) Develop solutions and adaptation strategies to fill the gaps in supply/demand.

1924, Soil Survey Of King City Area, California

State and Federal Documents Relating to Monterey and San Luis Obispo Counties

1924 report by E. J. Carpenter, A. E. Kocher and F. O. Youngs on the King City area of Monterey, California, including location and boundaries, climate, agriculture and the classes of soil.

1946 Salinas Basin Investigation Summary Report, Bulletin No. 52-B

State and Federal Documents Relating to Monterey and San Luis Obispo Counties

This joint 1946 18-month investigation of the Salinas Basin by the State Department of Water Resources and the County of Monterey deals with conditions in the lower Salinas River Basin near Monterey Bay due to saline water intrusion into the groundwater supply that was utilized for irrigation, domestic and industrial purposes. The report discusses the history of the basin, a description of the Salinas Valley, sub-basins, inflow and outflow, crops, wells, percolation, underground hydrology, quality of water, evaluation of water problem, methods of conservation, proposed solution and legal considerations.

1956 Salinas River Basin Investigation, Bulletin No. 19

State and Federal Documents Relating to Monterey and San Luis Obispo Counties

The February 1956 Salinas River Basin Investigation (State Water Resources Board Bulletin No. 19) contains an inventory of underground and surface water resources of the Salinas River Basin, estimates of present and probably ultimate water utilization, estimates of present and probably ultimate supplemental water requirements, and preliminary plans and cost estimates for local water development works and for works for possible importation of water from sources outside of the basin.

Carsey Perspectives: Bridging Farm And Table: The ‘Harvest To Market’ Innovation, Andrew Walters, Edie Allard

Carsey Publications

In this perspectives brief, authors Andrew Walters and Edie Allard describe a new online platform, Harvest to Market, that makes it easier for small farmers to sell their products directly to local consumers. Consumers visit the Harvest to Market website and find “markets” in their area. A market in this virtual context is a group of one or more nearby farms that collaborate online under the guidance of a coordinator called a market partner. The market partner, who can be a conscientious consumer, a farmer, a member of a local agricultural organization, or any other engaged individual, creates a web …

Lingnan Gardeners Newsletter (No. 22) = 嶺南彩園通訊 (第22期), Lingnan Gardeners, Kwan Fong Cultural Research And Development Programme, Lingnan University

Lingnan Gardeners Newsletter 嶺南彩園通訊

Autumn Equinox 秋分

Structural Determinants Allowing Transferase Activity In Sensitive To Freezing 2, Classified As A Family I Glycosyl Hydrolase, Rebecca Roston, Kun Wang, Leslie A. Kuhn, Christoph Benning

Department of Biochemistry: Faculty Publications

Background: SENSITIVE TO FREEZING 2 (SFR2) is classified as a glycosyl hydrolase, and by using glycosyltransferase activity, it modifies membrane lipids to promote freeze tolerance.

Results: Although the active site of SFR2 is identical to hydrolases, adjacent loop regions contribute to its transferase activity.

Conclusion: Transferase activity evolved by modifications external to the core catalytic site.

Significance: Defined structure-function relationships will inform engineering of transferases and freeze tolerance.

Nepal Ambient Monitoring And Source Testing Experiment (Namaste): Emissions Of Trace Gases And Light-Absorbing Carbon From Wood And Dung Cooking Fires, Garbage And Crop Residue Burning, Brick Kilns, And Other Sources, Chelsea E. Stockwell, Ted J. Christian, J. Douglas Goetz, Thilina Jayarathne, Prakash V. Bhave, Puppala S. Praveen, Sagar Adhikari, Rashmi Maharjan, Peter F. Decarlo, Elizabeth A. Stone, Eri Saikawa, Donald R. Blake, Isobel J. Simpson, Robert J. Yokelson, Arnico K. Panday

Chemistry and Biochemistry Faculty Publications

The Nepal Ambient Monitoring and Source Testing Experiment (NAMaSTE) campaign took place in and around the Kathmandu Valley and in the Indo-Gangetic Plain (IGP) of southern Nepal during April 2015. The source characterization phase targeted numerous important but undersampled (and often inefficient) combustion sources that are widespread in the developing world such as cooking with a variety of stoves and solid fuels, brick kilns, open burning of municipal solid waste (a.k.a. trash or garbage burning), crop residue burning, generators, irrigation pumps, and motorcycles. NAMaSTE produced the first, or rare, measurements of aerosol optical properties, aerosol mass, and detailed trace gas …