Molecular Diversity Of Foliar Fungal Endophytes In Relation To Defense Strategies And Disease In Whitebark Pine, Lorinda Bullington

Graduate Student Theses, Dissertations, & Professional Papers

An invasive fungal pathogen, Cronartium ribicola (the causative agent of white pine blister rust) infects and kills whitebark pine (Pinus albicaulis) throughout the western US. Blister rust has decreased whitebark pine populations by over 90% in some areas. Whitebark pine, a keystone species, has been proposed for listing under the Endangered Species Act in the U.S., and the loss of this conifer is predicted to have severe impacts on forest composition and function in high elevations. Hundreds of asymptomatic fungal species live inside whitebark pine tissue, and recent studies suggest that these fungi can influence the frequency and …

Harvest And Persistence Of Wolf Populations: Variable Effects Of Harvest On Wolf Packs In The Rocky Mountains, Sarah B. Bassing

Graduate Student Theses, Dissertations, & Professional Papers

Pubic harvest is a common method used to manage populations of wolves (Canis lupus) in North America. Although wolves appear resilient to the effects of harvest management the influences on demography and pack stability are uncertain. Packs generally drive population dynamics for wolves; thus, we were interested in how harvested populations were maintained and how harvest influenced the abundance and distribution of packs. We used noninvasive genetic data collected in Idaho, USA (2008–2014) and Alberta, Canada (2012–2014) to test whether immigration compensated for harvest mortality and helped maintain population densities. We further fit occupancy models to detection data …

Drivers And Feedbacks Of The Fire-Grazing Interaction In The Northern Great Plains, Jacob E. Powell

Graduate Student Theses, Dissertations, & Professional Papers

The fire-grazing interaction is well studied in mesic grasslands worldwide, but research is lacking in semiarid systems. In addition, the fire-grazing interaction reduces the invasion of exotic forage species in mesic grasslands by increasing the scale of grazing selection and may be a tool to control invasive plants in other grasslands. We examined the principal drivers and feedbacks of the fire-grazing interaction on the strength of cattle grazing selection, forage quantity and quality, and vegetation structure and composition in two pastures in northeast Montana at The Nature Conservancy’s Matador Ranch. We also determined the influence of time since fire, within …

Coupling Biophysical Complexity And Forest Metabolism In A Floodplain Landscape, Peter Davis

Graduate Student Theses, Dissertations, & Professional Papers

Floodplains are biophysically complex systems that are considered among the most productive and biodiverse ecosystems on Earth. Until recently, quantitative assessment of the relationship between complexity and terrestrial production has been constrained by technological limitation. To address how floodplain biophysical complexity and ecosystem function are related, I employed remote sensing, GIS, and spatial analyses to quantify and couple metrics of complexity and terrestrial production, as well as explore the relationship among complexity, vegetation structural diversity, and terrestrial primary productivity. The study site is a 6.75-km by 1.75-km portion of the Bitterroot River floodplain near Carlton, MT upon which 551 sample …

Understanding Patterns And Drivers Of Alaskan Fire-Regime Variability Across Spatial And Temporal Scales, Tyler J. Hoecker

Graduate Student Theses, Dissertations, & Professional Papers

Boreal forest and tundra ecosystems are globally important because the mobilization of large carbon stocks, and changes in energy balance could act as positive feedbacks to ongoing climate warming. In Alaska, wildfire is a key driver of ecosystem structure and function, and therefore fire strongly determines the feedbacks between high-latitude ecosystems and the larger Earth system. The paleoecological record from Alaska reveals the sensitivity of fire regimes to climatic and vegetation change over centennial to millennial time scales, highlighting increased burning with warming and/or increased landscape flammability associated with large-scale vegetation changes. This thesis focuses on two studies aimed at …

Does Timing Of Herbicide Use Influence Rates Of Germination Or Seedling Biomass Of Native Plants Used For Restoration?, Christine Mcmanamen

Graduate Student Theses, Dissertations, & Professional Papers

Invasive plants can negatively impact native grasslands by changing their species composition, productivity, and function. Managers commonly use herbicides as a control method; however, this practice can lead to secondary invasion by other non-native invasive plants, unless measures are taken to promote natives. Because of this, managers often seed native plants after spraying herbicides. There is evidence, however, that chemical control of invasive plants may reduce the effectiveness of subsequent seed-addition treatments, but there is currently little quantitative information on optimal timing between spraying and seeding or on variation in herbicide sensitivity among native plants commonly used in seed mixes. …

High-Resolution Mapping Of Hierarchical Greater Sage-Grouse Nesting Habitat: A Grain-Spectrum Approach In Northwestern Wyoming, Robert T. Haynam Iii

Graduate Student Theses, Dissertations, & Professional Papers

Our overall objective was to create a probabilistic nesting-habitat map for the Jackson Hole sage-grouse population that would have utility as a tool for future research, conservation, and management. The models that we developed for this purpose were specified to evaluate whether sage-grouse may be selecting nesting-habitat characteristics simultaneously at various spatial scales. Our spatially-explicit landscape-scale research was implemented primarily with readily available National Agriculture Imagery Program (NAIP) data. All nesting data was collected from 2007-2010. We tested how a broad range of grain sizes (spatial resolution) of covariate values affected the fit to logistic regression models used to estimate …

Sms Parent Action Intervention (Span): A Pilot Study To Assess The Feasibility Of Using Text Messaging To Promote Child Health On An American Indian Reservation, Julia M. Malich

Graduate Student Theses, Dissertations, & Professional Papers

Abstract

Purpose: Childhood obesity and its associated health risks are widely recognized as a major public health crisis in the United States (Johnson & Johnson, 2014; Proctor, 2008; Rogers et al, 2013; Vinci et al, 2016) and worldwide (Elías-Boneta, Toro, Garcia, Torres, & Palacios, 2015). Among children in low-income families, American Indian/Alaska Native (AIAN) children have the highest prevalence of obesity (21.1%) compared to other racial/ethnic groups (14.74% overall) (Pan et al, 2015). Parents play an important role in introducing healthy foods and encouraging physical activity in young children (Birch & Ventura, 2009; Lindsay et al., 2006; Natale et al., …

Poison In Pink, Sydney V. Cook

Graduate Student Theses, Dissertations, & Professional Papers

Humans slather, spray, mist, and cleanse their bodies with personal care products like lotion, hairspray, cologne, and shampoo every day. Our cupboards are stocked full of them, but few of us understand what is in those jars and bottles. We trust that if it’s on the shelf at the store, it’s safe. However, this is not always the case, and many personal care products contain chemicals that are harmful to human and environmental health.

My multi-disciplinary Environmental Studies thesis project combines evidenced-based research, interviews, nonfiction narrative, and science communication to create part of a book manuscript intended to educate general …

Assessing Stream Channel Restoration: The Phased Recovery Framework, Jacob M. Dyste

Graduate Student Theses, Dissertations, & Professional Papers

Channel reconfiguration projects command a large portion of stream restoration resources, while long-term monitoring and research is severely underfunded and rarely implemented. This has led to a limited knowledge base about ecological response and efficacy. Although channel reconfiguration projects are being implemented to restore biological function to lotic systems, the document responses are highly variable and little evidence has shown these projects are reaching their target goals. I predicted the inconsistent response to these projects is the result of disturbance-induced successional processes and catchment-scale water quality impairment. To address how these endogenous and exogenous factors influence stream response to channel …

Are Maximum Ground Forces And Leg Compression In Phase? A Test Of The Classical Spring Mass Model Of Running Gaits, Seth Donahue

Graduate Student Theses, Dissertations, & Professional Papers

The mechanical understanding of human running has classically been described as a spring-mass system, with subsequent models predicting the movements of the body’s center of mass and the forces applied by the leg against the ground. A central requirement of any spring system is the phasic relationship between the length of the elastic elements and the forces applied to these structures. Specifically, elastic elements compress under load and extend as the load is released. We tested whether this model applies to individuals with specialization for extreme performance in human gait. Recent work from elite level sprint runners suggest that their …

Limited Evidence For Co2-Related Growth Enhancement In Northern Rocky Mountain Pinus Contorta Populations: Trends In Growth And Intrinsic Water-Use Efficiency Across Climate Gradients, Charlotte C. Reed

Graduate Student Theses, Dissertations, & Professional Papers

Forests sequester large amounts of carbon annually; however, the degree to which enhanced forest productivity is due to more conducive climate or CO₂ fertilization remains uncertain. Increasing atmospheric CO₂ may enhance photosynthesis and/or decrease stomatal conductance thereby enhancing intrinsic water use efficiency (iWUE). While increasing iWUE has been observed in most trees globally, this increase does not necessarily translate into greater growth. This study aims to evaluate whether responses of radial growth and iWUE to increasing CO₂ vary across climatic gradients. To investigate interactions between climate and CO₂ and their impacts on tree physiology and growth, …

Growth Response Of Whitebark Pine (Pinus Albicaulis) Regeneration To Thinning And Prescribed Burn Release Treatments, Molly L. Mcclintock Retzlaff

Graduate Student Theses, Dissertations, & Professional Papers

Whitebark pine (Pinus albicaulis Engelm.) plays a prominent role throughout high-elevation ecosystems in the northern Rocky Mountains. It is an important food source for many birds and mammals, as well as a major player in high-elevation watershed maintenance, both slowing snowmelt and stabilizing soils. Whitebark pine is vanishing from the landscape due to three main factors – white pine blister rust (Cronartium ribicola) invasions, mountain pine beetle (Dendroctonus ponderosae) outbreaks, and successional replacement by more shade-tolerant tree species historically controlled by wildfire. In the past century, human activity such as fire suppression has altered these …

Integrated Stress And Community Perceptions: Toward An Understanding Of Human-Cougar Tolerance, Lara Brenner

Graduate Student Theses, Dissertations, & Professional Papers

Evidence suggests that cougars (Puma concolor) are beginning to recolonize their traditional range in the Midwestern and Eastern US, returning to a landscape and a social environment that have changed drastically in a century of absence. Any hope of the cougar’s persistence depends on both human tolerance of their presence and on cougar tolerance of disrupted habitat. In this thesis, we took advantage of diverse cougar policy in place in the Western US to explore variation in human attitudes and acceptability of cougars and in the cougar stress response. We validated a process to identify and extract cortisol …

The Health, Fitness, And Anthropometric Characteristics Of Firefighters On The North Coast Of California, Gil Spitz

Cal Poly Humboldt theses and projects

ABSTRACT

THE HEALTH, FITNESS AND ANTHROPOMETRIC CHARACTERISTICS OF FIREFIGHTERS ON THE NORTH COAST OF CALIFORNIA

Gil Spitz

Limited research has been conducted on the health-related physical fitness level of rural firefighters on the northern coast of California. The geographic isolation of rural firefighters creates unique challenges, including staffing shortages placing individual firefighters under unusual physiological stress.

PURPOSE: The purpose of this study was to examine the health-related physical fitness status of rural firefighters.

METHODS: 20 male firefighters (mean±sd, age = 32±7 yr, height = 180±5 cm, body mass = 96±16 kg, fire service = 9±7 yr) on the …

Habitat Use And Movement Patterns Of Two Redwood Forest Salamanders, Aneides Vagrans And Ensatina Eschscholtzii, With An Examination Of The Efficacy Of Pit Tags For Marking Small Plethodontids, Christian Brown

Cal Poly Humboldt theses and projects

The habitat use and movements of small, secretive salamanders are generally poorly understood, in part due to the difficulty associated with marking and recapturing such animals. This study was designed to test the efficacy, both in the laboratory and in the field, of using passive integrated transponder (PIT) tags to mark and track two small-bodied plethodontid salamander species native to coastal northwestern California, Aneides vagrans, the Wandering Salamander, and Ensatina eschscholtzii, the Ensatina Salamander.

Aneides vagrans inhabits tree crowns. Using cover objects and visual encounter surveys, I searched for A. vagrans in the angiosperm understory canopy at least twice …

In The Face Of Drought: Do Fuel Treatments Promote Resistance To Multi-Year Drought In A Mixed-Conifer Forest Of Northern California?, Michael Vernon

Cal Poly Humboldt theses and projects

Climate change is predicted to increase the frequency, duration, and severity of drought events across many bioregions. Forest managers have two active management techniques to promote resistance and resilience to drought: prescribed fire and mechanical thinning. Generally applied to reduce fuels and fire hazard, treated areas may also reduce competition for resources that may improve tree-growth during drought and reduce mortality. The recent severe and prolonged drought in California allowed me to investigate the effects of climate stress and fuel treatments on tree growth responses in a dry mixed-conifer forest ecosystem.

To assess tree-growth responses to fuel treatments during severe …

Effects Of A Post-Activation Potentiation Warm-Up On Submaximal Parallel Back Squat Volume, Rating Of Perceived Exertion, Peak Velocity, And Peak Power, Carlton Wei

Cal Poly Humboldt theses and projects

Resistance training (RT) is effective for improving athletic performance, with specific training loads and volumes dictating the adaptations. A warm-up is necessary to safely and effectively engage in RT: typically with a low intensity aerobic activity, stretching, and movement specific potentiating exercises. Post-activation potentiation (PAP) acutely increases muscular power following a conditioning contraction, though limited research has assessed its use for RT. The purpose of this study was to assess how a PAP warm-up protocol affects volume, rating of perceived exertion (RPE), and peak velocity and power with 75%1RM in the barbell parallel back squat (PBS) exercise across 4 sets. …

Propensity Of Predator Mimicry In Wild Steller's Jays, Trinity C. Tippin

Cal Poly Humboldt theses and projects

Avian vocal mimicry has been described in a variety of contexts, suggesting its function is multifaceted within and across species; however, basic empirical data describing mimetic signal prevalence and context is lacking for numerous species. I examined occurrence and context of mimicked red-shouldered hawk (Buteo lineatus) calls over a 12-month period in a wild population of 49 individually color-marked Steller’s jays (Cyanocitta stelleri) and reviewed the occurrence of the behavior in historic re-sight data. I documented mimicry of red-shouldered hawk calls in 14 of 49 (28.6%) jays during the study. Hawk mimicry occurred more often during …

Seasonal Fish And Invertebrate Communities In Three Northern California Estuaries, Katherine Osborn

Cal Poly Humboldt theses and projects

The majority of Northern California estuaries are small, flooded, river valleys that are largely unstudied due to their small sizes and remote locations. Yet these estuaries serve as important nursery areas for many marine fish species including rockfish, flatfish, smelt, and herring, and they are vital to anadromous species such as Chinook Salmon (Oncorhynchus tshawytscha) and Steelhead (O. mykiss). I sampled the summer and winter fish and invertebrate communities of the Big, Mad, and Ten Mile river estuaries. Fish were sampled via beach seine or fyke net and invertebrates were sampled via benthic cores, June 2014-June …

Factors Associated With Continuing Emergence Of Β-Thalassemia Major Despite Prenatal Testing: A Cross-Sectional Survey, Haleama Al Sabbah, Sarah Khan, Abdallah Hamadna, Lamia Abu Ghazaleh, Anwar Dudin, Bashar Adnan Karmi

All Works

© 2017 Al Sabbah et al. Purpose: Health care initiatives focusing on prenatal testing and premarital genetic screening aiming to reduce the incidence of β-thalassemia have emerged during the last decade. In Palestine, 4% of the population are known thalassemia carriers with new cases continuing to appear despite the availability of prenatal testing. This study aims to identify factors that influence the decision to retain or abort fetuses affected by β-thalassemia in Palestine. Methods: Convenience sampling was used to select 32 women (72 fetuses) who were at risk of having a baby with β-thalassemia. A questionnaire on prenatal testing, test …

Improved Performance Of Gene Set Analysis On Genome-Wide Transcriptomics Data When Using Gene Activity State Estimates, Thomas Kamp, Micah Adams, Craig Disselkoen, Nathan L. Tintle

Faculty Work Comprehensive List

Gene set analysis methods continue to be a popular and powerful method of evaluating genome-wide transcriptomics data. These approach require a priori grouping of genes into biologically meaningful sets, and then conducting downstream analyses at the set (instead of gene) level of analysis. Gene set analysis methods have been shown to yield more powerful statistical conclusions than single-gene analyses due to both reduced multiple testing penalties and potentially larger observed effects due to the aggregation of effects across multiple genes in the set. Traditionally, gene set analysis methods have been applied directly to normalized, log-transformed, transcriptomics data. Recently, efforts have …

Feasibility Of Rainwater Catchment In The Taos Mesa Community In Northern New Mexico, Miranda Rivera

Water Resources Professional Project Reports

INTRODUCTION Lack of water is nothing new for New Mexico’s general population. However, its immediate negative effects are unevenly distributed throughout the state, which is increasingly evident in the context of rising temperatures and decreases in precipitation. Access to clean drinking water is significantly more pressing in rural and off-the-grid communities than in metropolitan areas of New Mexico. On the Taos Mesa in northern New Mexico, these off-the-grid communities continue hauling as the only available method for accessing water today. In these communities, water is not only a vital source of livelihood but also necessary for the continuance of cultural …

Analyzing The Rio Chama Flow Project’S Capacity To Implement Adaptive Management, Avery Olshefski

Water Resources Professional Project Reports

The Rio Chama is the main tributary to the Rio Grande in New Mexico. Several reservoirs were built on the Rio Chama to store water for downstream users, which has led to the river section becoming highly managed, resulting in negative ecological effects. Approximately 400,000 AF per year of water is conveyed through the system without considerable consumptive amounts, 96,200 AF of which were added with the San Juan-Chama trans-basin diversion, creating more water in the system then historically available. Therefore, the flow between the El Vado and Abiquiu Reservoirs has the potential to be optimized in order to provide …

Introducing A Theory Of Neutrosophic Evolution: Degrees Of Evolution, Indeterminacy, And Involution, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

During the process of adaptation of a being (plant, animal, or human), to a new environment or conditions, the being partially evolves, partially devolves (degenerates), and partially is indeterminate i.e. neither evolving nor devolving, therefore unchanged (neutral), or the change is unclear, ambiguous, vague, as in neutrosophic logic. Thank to adaptation, one therefore has: evolution, involution, and indeterminacy (or neutrality), each one of these three neutrosophic components in some degree. The degrees of evolution/indeterminacy/involution are referred to both: the structure of the being (its body parts), and functionality of the being (functionality of each part, or inter-functionality of the parts …

Combination Of Bmp-2 And Relaxin To Induce Osteogenesis In Vivo, Sahitya Injamuri

Masters Theses

"Bone grafts are a common procedure for treating craniofacial injuries such as trauma, surgery, and reconstruction. Autografts and allografts have limitations which encourages the use of synthetic bone grafts. While synthetic bone grafts, such as hydroxyapatite (HA) microspheres, are advantageous for their cost and reproducibility, they lack the cells and growth factors needed for proper osteoinduction. Bone morphogenetic protein-2 (BMP-2) has been shown to increase the osteoinduction of grafts but the effective dose is above physiological levels and causes undesired effects on the body. Relaxin has been shown to enhance BMP-2's ability to induce bone formation in vitro and thus …

Effect Of Local Magnetic Field Disturbances On Inertial Measurement Units Accuracy, Xavier Robert-Lachaine, Hakim Mecheri, Christian Larue, André Plamondon

Études primaires

Inertial measurement units (IMUs), a practical motion analysis technology for field acquisition, have magnetometers to improve segment orientation estimation. However, sensitivity to magnetic disturbances can affect their accuracy. The objective of this study was to determine the joint angles accuracy of IMUs under different timing of magnetic disturbances of various durations and to evaluate a few correction methods. Kinematics from 12 individuals were obtained simultaneously with an Xsens system where an Optotrak cluster acting as the reference system was affixed to each IMU. A handling task was executed under normal laboratory conditions and imposed magnetic disturbances. Joint angle RMSE was …

Validation Of Inertial Measurement Units With An Optoelectronic System For Whole-Body Motion Analysis, Xavier Robert-Lachaine, Hakim Mecheri, Christian Larue, André Plamondon

Études primaires

The potential of inertial measurement units (IMUs) for ergonomics applications appears promising. However, previous IMUs validation studies have been incomplete regarding aspects of joints analysed, complexity of movements and duration of trials. The objective was to determine the technological error and biomechanical model differences between IMUs and an optoelectronic system and evaluate the effect of task complexity and duration. Whole-body kinematics from 12 participants was recorded simultaneously with a full-body Xsens system where an Optotrak cluster was fixed on every IMU. Short functional movements and long manual material handling tasks were performed and joint angles were compared between the two …

On The Origin Of Superoxide Dismutase: An Evolutionary Perspective Of Superoxide-Mediated Redox Signaling., Adam J. Case

Journal Articles: Cellular & Integrative Physiology

The field of free radical biology originated with the discovery of superoxide dismutase (SOD) in 1969. Over the last 5 decades, a plethora of research has been performed in species ranging from bacteria to mammals that has elucidated the molecular reaction, subcellular location, and specific isoforms of SOD. However, while humans have only begun to study this class of enzymes over the past 50 years, it has been estimated that these enzymes have existed for billions of years, and may be some of the original enzymes found in primitive life. As life evolved over this expanse of time, these enzymes …

Effects Of Nonaerated Circulation Water Velocity On Nutrient Release From Aquaculture Pond Sediments, Xiangju Cheng, Dantong Zhu, Xixi Wang, Deguang Yu, Jun Xie

Civil & Environmental Engineering Faculty Publications

Sustaining good water quality in aquaculture ponds is vital. Without an aerator, the dissolved oxygen in ponds comes primarily from mass transfer at the water-ambient atmosphere interface. As sediment can seriously affect water quality, this study used indoor experiments to examine the nutrient (nitrogen and phosphorus) release mechanisms and fluxes from sediment in aquaculture ponds with moving water but no aeration. The results showed that the ammonia nitrogen (NH₃-N) concentration in the overlying water was inversely proportional to flow velocity and that a higher flow velocity tended to result in a lower concentration in the overlying water, a …