Life Sciences Commons^™

Isocratic Ultra-Performance Liquid Chromatographic Assay Of Quetiapine Fumarate In Pharmaceuticals, N Rajendra Prasad, Kanakapura Basavaiah

The Thai Journal of Pharmaceutical Sciences

An isocratic and reversed phase ultra-performance liquid chromatographic (RP-UPLC) method has been developed for the determination of quetiapine fumarate (QTF)) in bulk drug and in its tablets. The method was developed using AQUITY UPLC HSS T3 (2.1 x 50.

Stability-Indicating Method To Determine Bioactive Nucleosides In Crude Drugs, Extracts, And Products From Cordyceps Sinensis And Cordyceps Militaris, Boonta Chutvirasakul

The Thai Journal of Pharmaceutical Sciences

The aim of this study was to develop a stability indicating method to determine bioactive nucleosides including uridine, guanosine, adenosine, and cordycepin in crude drugs, extracts, and products from Cordyceps Sinensis and Cordyceps Militaris by gradie.

A Medicines Terminology Governance Model For Thailand, Anuchai Theeraroungchaisri, Ratsapan Phuksaritanon, Boonchai Kijsanayotin

The Thai Journal of Pharmaceutical Sciences

At present, Thailand does not have a national governance system for developing a health data standard and coding system, especially drug codes and medicine terminology. There is no single responsible organization and also no mechanism for cooperation amo.

Frost: Frequently Asked Questions, Department Of Primary Industries And Regional Development, Western Australia

Grain and other field crops published reports

Frequently asked questions regarding frost from the National Frost Initiative.

Soil Erosion Risk Factors And The Impacts Of Diversification On Organic Strawberry Farms Along California’S Central Coast, Kay Sterner

Pomona Senior Theses

Soil erosion is a major issue that threatens to undermine our current system of agriculture. Due to the fact that this system is in turn the number one cause of erosion, agricultural practices in the United States need to be rethought. This study explores how traditional ideas of erosion risks are related to observed erosion on organic strawberry farms along California’s Central Coast. In addition, diversified farming systems are addressed as a possible solution for the current unsustainability of our farming practices. The data from this research suggest that diversity of crops on farms could be linked to less soil …

From Yosemite To A Global Market: How Patagonia, Inc. Has Created An Environmentally Sustainable And Socially Equitable Model Of Supply-Chain Management, Mary-Clare Bosco

Pomona Senior Theses

There is an urgent pressure of the time (2016) to re-evaluate our patterns of consumption to adapt to changing climates and reduce waste and pollution. Because an immediate restructuring of global production strategies is not likely any time soon, industrial innovators are finding new ways of redesigning supply-chain management in efforts to move towards environmentally sustainable business in which all manufacturing practices are transparent. Patagonia, Inc. is a testament to the often-debated question of economic value in green business practices, and this thesis acts as an outline as to how they arrived at such an impressive presence in the business …

Using Geospatial Analysis For High School Environmental Science Education: A Case Study Of The Jane Goodall Institute's Community-Centered Conservation Approach, Madison G. Vorva

Pomona Senior Theses

Given my experiences as a young conservation advocate, I saw a need to teach students the importance of interconnectedness, cultural awareness and systems-thinking skills through a spatial lens. I believe these skills are required for holistic, equitable and sustainable conservation decision-making in local and international contexts. This thesis uses geospatial tools to teach conservation ecology vocabulary and concepts from high school environmental science curriculum in two online resources. The purpose of my lesson plan is to show students how conservationists address complex conservation and land-use challenges using the Jane Goodall Institute’s community-centered conservation approach as a case-study. My hope is …

Engineering An Alkane-Hydroxylating Bacterial Monooxygenase: A Tale Of Two Chemistries, Arjun Nanda

Pomona Senior Theses

Toluene / o-xylene monooxyenase (ToMO) from Pseudomonas sp. OX1 is a multimeric metalloenzyme enzyme that efficiently catalyzes the hydroxylation of aromatic hydrocarbons with high specificity. Though included in a larger group of conserved bacterial multicomponent monooxygenases (BMMs) studied as potential biocatalysts for industrial hydrocarbon chemistry, the substrate specificity and oxygenated intermediates of ToMO differ greatly from its well-characterized, alkane-hydroxylating analog sMMO. Despite a shared global topology and near identical active sites, sMMO can cleave inert C-H bonds in alkanes while ToMO cannot - two seemingly similar structures give rise to vastly different chemistries. This work seeks to determine a structural …

Distribution And Habitat Use Of The Golden Crab Chaceon Fenneri Off Eastern Florida Based On In Situ Submersible And Rov Observations And Potential For Impacts To Deep Water Coral/Sponge Habitat, John K. Reed, Stephanie Farrington, Charles Messing, Andrew David

Gulf and Caribbean Research

This study documents the distribution and habitat preferences of the golden crab, a commercially fished species, in relation to deep-sea coral/sponge ecosystems (DSCEs) at 200-900 m depths off eastern Florida. A total of 386 h of videotapes from 94 submersible and remotely operated vehicle (ROV) dives from 1999 to 2009, covering a total distance of 376 km, were reviewed and characterized for habitat type and presence of crabs. The DSCEs surveyed included Lophelia coral mounds, Miami Terrace, Pourtalès Terrace, and Tortugas Valleys. Video transect data also included environmental surveys of proposed deep-water routes for Liquid Natural Gas (LNG) pipelines, LNG …

Fishery Habitat In Estuaries Of The Gulf Of Mexico: Reflections On Geographical Variability In Salt Marsh Value And Function, Thomas J. Minello

Gulf and Caribbean Research

After 35 years working with many estuarine ecologists, I have concluded that all salt marshes are not created equal. This may seem like a trivial conclusion, but not everyone is a believer. While coastal salt marshes have many important ecological functions, their ability to support marine fisheries appears dependent on some specific characteristics. Extensive flooding of the marsh surface and a large amount of edge per area of vegetation have been identified as important in supporting production of juvenile brown shrimp (Farfantepenaeus aztecus), white shrimp (Litopenaeus setiferus), and blue crab (Callinectes sapidus). Data on other species are limited, but …

Eco-Label Certification: A Case Study Of The Campeche Shrimp Fishery, Mexico, Antonio Di Cintio, Luis Bourillón Moreno

Gulf and Caribbean Research

The Marine Stewardship Council (MSC) eco—label certifies that seafood comes from a sustainable source. The use of this eco—label lags behind in the developing world, where ecosystem approaches to fishery management have not yet been widely implemented. However, the Food and Agriculture Organization under its REBYC—II LAC project is addressing ecosystem concerns within the shrimp trawl fisheries of a number of developing countries in Latin America and the Caribbean by helping them to improve management of the negative ecosystem impacts by modifying their gear to reduce by—catch and habitat damage. This study investigates how the potential improvements identified by the …

What's In A Name? New Bacterial Species And Changes To Taxonomic Status From 2012 Through 2015, Erik Munson, Karen C. Carroll

Clinical Lab Sciences Faculty Research and Publications

Technological advancements in fields such as molecular genetics and the human microbiome have resulted in an unprecedented recognition of new bacterial genus/species designations by the International Journal of Systematic and Evolutionary Microbiology. Knowledge of designations involving clinically significant bacterial species would benefit clinical microbiologists in the context of emerging pathogens, performance of accurate organism identification, and antimicrobial susceptibility testing. In anticipation of subsequent taxonomic changes being compiled by the Journal of Clinical Microbiology on a biannual basis, this compendium summarizes novel species and taxonomic revisions specific to bacteria derived from human clinical specimens from the calendar years 2012 through …

The Effect Of Artificial Light Pollution On Orientation Of Hatchling Loggerhead Sea Turtles (Caretta Caretta) In The Grand Strand Region, South Carolina, Emily S. Asp

Electronic Theses and Dissertations

Sea turtle hatchlings primarily utilize sight to detect differences in elevation and light intensity present along the horizon to navigate from the nest to the water’s edge. The addition of artificial lights can cause visual misdirection, resulting in disorientation (aimlessly wandering in circular paths) or misorientation (moving in distinct paths away from ocean). Extensive research has been done on effects of high levels of artificial light but little on effects of comparatively lower levels of artificial light on hatchling sea turtle orientation. This study examined these lower intensity areas to identify if there is a threshold of artificial light above …

The Spatial Ecology Of The Southern Copperhead In A Fragmented And Non-Fragmented Habitat, Megan Veronica Novak

Electronic Theses and Dissertations

Habitat fragmentation may alter the spatial ecology of organisms inhabiting the fragmented landscape by limiting the area of habitat available and altering microhabitat features. I quantified and compared movement of southern copperheads (Agkistrodon contortrix contortrix) in a fragmented and non-fragmented habitat to determine the effects of habitat fragmentation on the spatial ecology of the southern copperhead. Effective distance moved by each individual was measured by the use of thread bobbins attached via medical tape to the posterior quarter of the snake. Straight-line distance moved and occupied area were calculated with the GPS coordinates recorded at each snake sighting. Straight-line distance …

A Chemical And Genetic Approach To Study The Polyamine Transport System In Drosophila, Minpei Wang

Electronic Theses and Dissertations

Polyamines are small cationic molecules that play important roles in most vital cellular processes including cell growth and proliferation, regulation of chromatin structure, translation and programmed cell death. Cellular polyamine pools are maintained by a balance between biosynthesis and transport (export and import). Increased polyamine biosynthesis activity and an active transport system are characteristics of many cancer cell lines, and polyamine depletion has been shown to be a viable anticancer strategy. Polyamine levels can be depleted by α-difluoromethylornithine (DFMO), an inhibitor of the key polyamine biosynthesis enzyme ornithine decarboxylase. However, malignant cells often circumvent DFMO therapy by up-regulating polyamine import; …

Deep Sequencing Transcriptome Analysis Of Murine Wound Healing: Effects Of A Multicomponent, Multitarget Natural Product Therapy-Tr14, Georges St. Laurent Iii, Bernd Seilheimer, Michael Tackett, Jianhua Zhou, Dmitry Shtokalo, Ian Toma, +Several Additional Authors

Clinical Research and Leadership Faculty Publications

Wound healing involves an orchestrated response that engages multiple processes, such as hemostasis, cellular migration, extracellular matrix synthesis, and in particular, inflammation. Using a murine model of cutaneous wound repair, the transcriptome was mapped from 12 h to 8 days post-injury, and in response to a multicomponent, multi-target natural product, Tr14. Using single-molecule RNA sequencing (RNA-seq), there were clear temporal changes in known transcripts related to wound healing pathways, and additional novel transcripts of both coding and non-coding genes. Tr14 treatment modulated >100 transcripts related to key wound repair pathways, such as response to wounding, wound contraction, and cytokine response. …

Population Genetics And Distribution Of The Oriental Weatherfish, Misgurnus Anguillicaudatus, In Chicago Area Waterways, John Belcik

Master's Theses

Oriental Weatherfish (Misgurnus anguillicaudatus), native to Southeast Asia, are freshwater fish belonging to the family Cobitidae (loaches). They are benthic fish with the ability to breathe atmospheric air, and exhibit an unusual behavior of swimming vertically in the water column in response to changes in barometric pressure. Oriental Weatherfish appear to be successful invaders to North American waterways. Within the last century they have been sighted in freshwater systems throughout the United States, yet the distribution and source of this invasion are largely unknown. This study investigates the distribution patterns, surveying methods, and population genetics of the Oriental Weatherfish within …

Mammary Extracellular Matrix Directs Differentiation Of Testicular And Embryonic Stem Cells To Form Functional Mammary Glands In Vivo, Robert D. Bruno, Jodie M. Fleming, Andrea L. George, Corinne A. Boulanger, Pepper Schedin, Gilbert H. Smith

School of Medical Diagnostics & Translational Sciences Publications

Previously, we demonstrated the ability of the normal mammary microenvironment (niche) to direct non-mammary cells including testicular and embryonic stem cells (ESCs) to adopt a mammary epithelial cell (MEC) fate. These studies relied upon the interaction of transplanted normal MECs with non-mammary cells within the mammary fat-pads of recipient mice that had their endogenous epithelium removed. Here, we tested whether acellular mammary extracellular matrix (mECM) preparations are sufficient to direct differentiation of testicular-derived cells and ESCs to form functional mammary epithelial trees in vivo. We found that mECMs isolated from adult mice and rats were sufficient to redirect testicular derived …

High-Throughput Single-Molecule Mapping Links Subtelomeric Variants And Long-Range Haplotypes With Specific Telomeres, Eleanor Young, Steven Pastor, Ramakrishnan Rajagopalan, Jennifer Mccaffrey, Justin Sibert, Angel C. Y. Mak, Pui-Yan Kwok, Harold Riethman, Ming Xiao

School of Medical Diagnostics & Translational Sciences Publications

Accurate maps and DNA sequences for human subtelomere regions, along with detailed knowledge of subtelomere variation and long-range telomereterminal haplotypes in individuals, are critical for understanding telomere function and its roles in human biology. Here, we use a highly automated whole genome mapping technology in nano-channel arrays to analyze large terminal human chromosome segments extending from chromosome-specific subtelomere sequences through subtelomeric repeat regions to terminal (TTAGGG) n repeat tracts. We establish detailed maps for subtelomere gap regions in the human reference sequence, detect many new large subtelomeric variants and demonstrate the feasibility of long-range haplotyping through segmentally duplicated subtelomere regions. …

Tissue Specific Microenvironments: A Key Tool For Tissue Engineering And Regenerative Medicine, Patrick C. Sachs, Peter A. Mollica, Robert D. Bruno

School of Medical Diagnostics & Translational Sciences Publications

The accumulated evidence points to the microenvironment as the primary mediator of cellular fate determination. Comprised of parenchymal cells, stromal cells, structural extracellular matrix proteins, and signaling molecules, the microenvironment is a complex and synergistic edifice that varies tissue to tissue. Furthermore, it has become increasingly clear that the microenvironment plays crucial roles in the establishment and progression of diseases such as cardiovascular disease, neurodegeneration, cancer, and ageing. Here we review the historical perspectives on the microenvironment, and how it has directed current explorations in tissue engineering. By thoroughly understanding the role of the microenvironment, we can begin to correctly …

Isolation Of A Novel Phage Otoolekemple52, Thomas O. Raymond

UROP Posters

A bacteriophage is a virus capable of infecting bacteria like ubiquitous soil-dwelling genus Bacillus. Within the Bacillus genus, there is the “ACT family” made up of B. thuringiensis, B. cereus, and B. anthracis, which are highly related but with different pathogenic characteristics. Because of this, phages isolated using a species in this group may have a broad host range encompassing several species from Bacillus. Since B. cereus and B. anthracis can result in fatal to mild sickness in humans, the non-pahtogenic B. thuringiensis kurstaki was used to discover and characterize novel phages. The phage OTooleKemple52 was isolated …

Identification Of “Kratom” (Mitragyna Speciosa) Alkaloids In Commercially Available Products, Julia Grzymkowski, Michelle R. Peace, Justin Poklis

UROP Posters

“Kratom” is the common name for the botanical mitragyna speciosa. It is a tree native to Southeast Asia in which leaves contain the psychoactive alkaloids mitragynine and 7-hydroxymitragynine. Kratom is often ingested as teas, chewed, or smoked. It acts as a stimulant in small doses and as an opioid in large doses. Overdoses can result in vomiting, seizures, and death. Recently the Drug Enforcement Agency (DEA) placed Kratom on Schedule 1, but, due to public outcry, it was almost immediately removed.

Eleven kratom based products were obtained from various tobacco shops, “headshops” and via the internet including: Choice brand …

Characterization Of A Putative Hemolysin Expressed By Sneathia Amnii, A Preterm Birth-Associated Pathogen, Lizette Carrasco, Kimberly Jefferson

UROP Posters

The gram-negative bacteria Sneathia amnii is a poorly-characterized commensal of the female urogenital tract frequently associated with adverse clinical outcomes such as bacterial vaginosis (BV), amnionitis, and preterm labor. To investigate its potential role in virulence, we sought to identify and characterize virulence determinants produced by S. amnii in an effort to better understand the pathogenesis of infectious preterm birth. Through sequencing of the Sn35 genome (type strain of S. amnii), we identified two genes with amino acid sequence similarity and structural similarity to the filamentous hemagglutinin (FHA) protein of Bordetella pertussis and its Type Vb transporter. Because S. amnii …

The Extension Of Rbc Longevity And Functionality In The Prevention Of Graft Versus Host Disease, Shanmuka Gadiraju, Megh Kumar

UROP Posters

Given today’s current scientific method of preservation, red blood cells (RBCs) donated or drawn from live humans have a storage life of approximately 42 days, after which the blood will be discarded due to of degradation of the RBCs. The mechanism that drives said degradation is known as oxidative stress, in which the cells’ inability to balance out the creation and excretion of free radicals causes a conformational change in the shape and efficacy of RBCs. In order to counteract the oxidative actions upon the cells, it has been thought that the addition of reducing agents, specifically ascorbic acid, the …

Dredging Land Reclamation Causing Mucus Development In Massive Spherical Corals In The Spratly Islands, South China Sea: The Effects On China’S Fishing Industry, Tiffany K. Ho

UROP Posters

Images from Asia Maritime Transparency Initiative depicted huge masses of white coral mucus secreted from coral reefs in the Spratly Islands of the South China Sea, an area where several land reclamation projects are occurring. The purpose of this research was to understand how increased sedimentation levels from the dredging land reclamation method affects mucus development in massive corals, such as Acropora, located in these reefs. Journal articles that focused on the biology of coral mucus, bacterial communities associated with coral tissue, mucus, and seawater, coral mortality from different environment impacts, coral coverage of reefs in Spratly Islands, and symbiotic …

Separation Of Blood Mixtures Using Fluorescently Labeled Antibodies, Dani Jabado

UROP Posters

Identifying and analyzing biological mixture samples at a crime scene are of paramount concern for forensic scientists, especially if that type of evidence contains only one cell type. The presence of multiple contributors in a biological evidence sample reduces the probative value of DNA evidence and can sometimes lead to its eventual loss of value. As such, this study was performed in an attempt to examine and evaluate flow cytometry analysis as a means to separate blood mixture samples labeled with fluorescent antibodies. Fluorescein Isothiocyanate (FITC) antibodies were specifically targeted and bound to HLA (Human Leukocyte Antigens) markers present on …

Effects Of Mutating Ctra-Binding Sites Within The Pile Promoter Of Caulobacter Crescentus, Sarah Chong

Honors Theses

This project investigated the regulation of pilA by the global transcriptional regulator CtrA in the dimorphic bacterium Caulobacter crescentus. The pilA gene encodes the pilin subunits which are polymerized into helical filaments to produce pili, and the gene is directly activated by CtrA such that filaments are produced after cell separation. The pilA promoter harbors three regions that have been shown to bind CtrA (Binding Regions 1, 2, and 3), and multiple CtrA recognition sites are found in these regions, which is unusual for CtrA-dependent promoters. However, none of the binding sites match the CtrA consensus binding sequence. The canonical …

Interaction Graphs Derived From Activation Functions And Their Application To Gene Regulation, Simon Joyce

Graduate Dissertations and Theses

Interaction graphs are graphic representations of complex networks of mutually interacting components. Their main application is in the field of gene regulatory networks, where they are used to visualize how the expression levels of genes activate or inhibit the expression levels of other genes.

First we develop a natural transformation of activation functions and their derived interaction graphs, called conjugation, that is related to a natural transformation of signed digraphs called switching isomorphism. This is a useful tool for the analysis of interaction graphs used throughout the rest of the dissertation.

We then discuss the question of what restrictions, if …

Comparative Effectiveness Of An Exercise And Sedentary Break Intervention On Mood Profile And Dietary Behavior In Young Adults: Pilot Study, Hannah Dau

Honors Theses

Exercise and sedentary behavior are both important subsets of PA (Physical Activity) to study, with emerging research demonstrating that sedentary behavior may predict mental health outcomes independent of PA. Additionally, a correlation has been observed between diet and PA, but few studies on this topic have employed an intervention design. Thus, the purpose of this study was to examine whether changes in PA and sedentary behavior influence mood profile and dietary behavior. The PA intervention consisted of progressively increasing their vigorous-intensity PA (jogging) over a 4-week period among an inactive population. The sedentary group was asked not to exercise, but …

The Prevalence Of Food Insecurity Within The University Of Mississippi Community And Knowledge Of And Opinions About The University Of Mississippi Food Bank, Megan Marie Eubanks

Honors Theses

The purpose of this research was to determine the prevalence of food insecurity within the University of Mississippi community. The project also investigated whether the University of Mississippi (UM) community supports and/ or knows about the UM Food Bank. A survey to determine perceived levels of food insecurity and knowledge of and opinions about the UM Food Bank was dispersed through Qualtrics Survey Software via University email to one-third of the UM faculty, staff, graduate students (including Pharmacy and Law), and undergraduate students. The final survey response count was 356 (response rate: 6.48%). Data collected for questions pertaining to food …