Life Sciences Commons^™

Effect Of Temperature On Wheat Streak Mosaic Disease Development In Winter Wheat, Everlyne N. Wosula, Satyanarayana Tatineni, Stephen N. Wegulo, Gary L. Hein

Department of Plant Pathology: Faculty Publications

Temperature is one of the key factors that influence viral disease development in plants. In this study, temperature effect on Wheat streak mosaic virus (WSMV) replication and in planta movement was determined using a green fluorescent protein (GFP)-tagged virus in two winter wheat cultivars. Virus-inoculated plants were first incubated at 10, 15, 20, and 25°C for 21 days, followed by 27°C for 14 days; and, in a second experiment, virus-inoculated plants were initially incubated at 27°C for 3 days, followed by 10, 15, 20, and 25°C for 21 days. In the first experiment, WSMV-GFP in susceptible ‘Tomahawk’ wheat at 10°C …

Detection And Characterization Of Xanthomonas Vasicola Pv. Vasculorum (Cobb 1894) Comb. Nov. Causing Bacterial Leaf Streak Of Corn In The United States, J. M. Lang, E. Ducharme, J. Ibarra Caballero, E. Luna, T. Hartman, M. Ortiz-Castro, K. A. Korus, J. Rascoe, T. A. Jackson-Ziems, K. Broders, J. E. Leach

Department of Plant Pathology: Faculty Publications

Bacterial leaf streak of corn (Zea mays) recently reached epidemic levels in three corn-growing states and has been detected in another six states in the central United States. Xanthomonas vasicola was identified as the causal agent of this disease. A multilocus sequence alignment of six housekeeping genes and comparison of average nucleotide identity from draft genome sequence were used to confirm phylogenetic relationships and classification of this bacteria relative to other X. vasicola strains. X. vasicola isolates from Nebraska and South Africa were highly virulent on corn and sugarcane and less virulent on sorghum but caused water-soaking symptoms …

Plant Disease Management, Tamra A. Jackson-Ziems, Anthony O. Adesemoye, Loren J. Giesler, Robert M. Harveson, Stephen N. Wegulo, Joshua J. Miller, James D. Harbour

Department of Plant Pathology: Faculty Publications

Fungicides are an important component of the pesticide program for some Nebraska fields. While not all fields of corn, dry bean, sorghum, soybean, sugarbeet, sunflower, and wheat will require a fungicide application, it’s critical that you know the correct product for the disease in your field when you do need it.

Identification. The first step with any disease management program is to make sure you have correctly identified the problem. Identification is critical as there are many bacterial diseases with symptoms similar to fungal diseases, and fungicides will have no activity on them. For help identifying crop diseases, visit the …

What's New In Plant Pathology, Joshua J. Miller, Anthony O. Adesemoye, Loren Giesler, Robert M. Harveson, Tamra A. Jackson-Ziems, Stephen N. Wegulo, James D. Harbour, Terra Hartman

Department of Plant Pathology: Faculty Publications

Changes to the Disease Management Section of the 2017 Guide for Weed, Disease, and Insect Management in Nebraska

Bacterial Leaf Streak of Corn—An Emerging Disease in Nebraska and First Report in the United States

Pest and Plant Diagnostic Clinic Position Change

New Products … Ethos XB … Majestene

Table 1. Foliar products for disease control that were updated in the 2017 Guide for Weed, Disease, and Insect Management in Nebraska

Table 2. Seed treatment products for disease control that were updated in the 2017 Guide for Weed, Disease, and Insect Management in Nebraska

Table 3. Biological products that were updated …

Response Of Sorghum Stalk Pathogens To Brown Midrib Plants And Soluble Phenolic Extracts From Near Isogenic Lines, Deanna L. Funnell-Harris, Patrick M. O'Neill, Scott E. Sattler, Tammy Gries, Mark A. Berhow, Jeffrey F. Pedersen

Department of Plant Pathology: Faculty Publications

Sorghum [Sorghum bicolor (L.) Moench] has drawn attention as potential feedstock for lignocellulosic biofuels production, and reducing lignin is one way to increase conversion efficiency. Little research has been previously conducted to assess the response of reduced lignin sorghum lines to the Fusarium stalk rot pathogens Fusarium verticillioides and Fusarium proliferatum and the charcoal rot pathogen, Macrophomina phaseolina. Loss of function mutations in either the Brown midrib (Bmr) 6 or 12 gene that both encode a monolignol biosynthetic enzyme in the pathway that produces subunits of the lignin polymer, results in reduced lignin content. Near-isogenic bmr6, …

Best Practices For Population Genetic Analyses, Niklaus J. Grünwald, Sydney E. Everhart, B. J. Knaus, Z. N. Kamvar

Department of Plant Pathology: Faculty Publications

Population genetic analysis is a powerful tool to understand how pathogens emerge and adapt. However, determining the genetic structure of populations requires complex knowledge on a range of subtle skills that are often not explicitly stated in book chapters or review articles on population genetics. What is a good sampling strategy? How many isolates should I sample? How do I include positive and negative controls in my molecular assays? What marker system should I use? This review will attempt to address many of these practical questions that are often not readily answered from reading books or reviews on the topic, …

Phenotypic And Genotypic Characterization Of Relevant Sclerotinia Sclerotiorum Isolates, Thomas J. Justo Miorini, Anthony G. Pannullo, T. Hornby, Robert Higgins, Sydney E. Everhart, James R. Steadman

Department of Plant Pathology: Faculty Publications

Knowledge of pathogen population structure is useful to identify isolates for screening cultivars and lines for resistance. For S. sclerotiorum, causal agent of white mold in more than 400 plant species, including common bean and soybean, breeding for resistance is particularly challenging. The objective of this study was to characterize phenotypic and genotypic variation of S. sclerotiorum isolates from soybean production areas of the U.S.A. (15), Brazil (75), and Argentina (5) to compare them with 366 isolates from dry bean characterized previously (Everhart et al., 2016).

Best Practices For Population Genetic Analyses, Niklaus J. Grünwald, Sydney E. Everhart, B. J. Knaus, Zhian N. Kamvar

Department of Plant Pathology: Faculty Publications

Population genetic analysis is a powerful tool to understand how pathogens emerge and adapt. However, determining the genetic structure of populations requires complex knowledge on a range of subtle skills that are often not explicitly stated in book chapters or review articles on population genetics. What is a good sampling strategy? How many isolates should I sample? How do I include positive and negative controls in my molecular assays? What marker system should I use? This review will attempt to address many of these practical questions that are often not readily answered from reading books or reviews on the topic, …

Control Of White Mold Of Dry Bean And Residual Activity Of Fungicides Applied By Chemigation, Thomas J.J. Miorini, Carlos G. Raetano, Sydney E. Everhart

Department of Plant Pathology: Faculty Publications

Sclerotinia sclerotiorum is a necrotrophic fungal pathogen that causes white mold of dry bean (Phaseolus vulgaris L.). Chemigation with fungicides is used for disease control, but effectiveness of this application method and impact of irrigation level on residual fungicide activity in the plant over time under field conditions has not been well characterized. To assess the best method of application and fungicide for disease control, we conducted field studies in three field sites in São Paulo State in Brazil. Contact fungicide, fluazinam, was applied via center pivot at three irrigation levels (2.5, 5.1, 10.1 mm) at the Itaí field …

Conversion Of An Instantaneous Activating K+ Channel Into A Slow Activating Inward Rectifier, Dirk Baumeister, Brigitte Hertel, Indra Schroeder, Sabrina Gazzarrini, Stefan M. Kast, James L. Van Etten, Anna Moroni, Gerhard Thiel

James Van Etten Publications

The miniature channel, Kcv, is a structural equivalent of the pore of all K⁺ channels. Here, we follow up on a previous observation that a largely voltage-insensitive channel can be converted into a slow activating inward rectifier after extending the outer transmembrane domain by one Ala. This gain of rectification can be rationalized by dynamic salt bridges at the cytosolic entrance to the channel; opening is favored by voltage-sensitive formation of salt bridges and counteracted by their disruption. Such latent voltage sensitivity in the pore could be relevant for the understanding of voltage gating in complex Kv channels.

Structure Of The N-Glycans From The Chlorovirus Ne-Jv-1, Immacolata Speciale, Irina Agarkova, Garry Duncan, James L. Van Etten, Cristina De Castro

James Van Etten Publications

Results from recent studies are breaking the paradigm that all viruses depend on their host machinery to glycosylate their proteins. Chloroviruses encode several genes involved in glycan biosynthesis and some of their capsid proteins are decorated with N-linked oligosaccharides with unique features. Here we describe the elucidation of the N-glycan structure of an unusual chlorovirus, NE-JV-1, that belongs to the Pbi group. The host for NE-JV-1 is the zoochlorella Micractinium conductrix. Spectroscopic analyses established that this N-glycan consists of a core region that is conserved in all of the chloroviruses. The one difference is that the residue 3OMe-l-rhamnose is …

Glucose-Abl1-Tor Signaling Modulates Cell Cycle Tuning To Control Terminal Appressorial Cell Differentiation, Margarita Marroquin-Guzman, Guangchao Sun, Richard Wilson

Department of Plant Pathology: Faculty Publications

The conserved target of rapamycin (TOR) pathway integrates growth and development with available nutrients, but how cellular glucose controls TOR function and signaling is poorly understood. Here, we provide functional evidence from the devastating rice blast fungus Magnaporthe oryzae that glucose can mediate TOR activity via the product of a novel carbon- responsive gene, ABL1, in order to tune cell cycle progression during infection-related development. Under nutrient-free conditions, wild type (WT) M. oryzae strains form terminal plant-infecting cells (appressoria) at the tips of germ tubes emerging from three-celled spores (conidia). WT appressorial development is accompanied by one round …

Kentucky Water Resources Research Institute Annual Technical Report Fy 2016, Kentucky Water Resources Research Institute, University Of Kentucky

KWRRI Annual Technical Reports (USGS’s 104b Grant Program)

The 2016 Annual Technical Report for Kentucky consolidates reporting requirements for the Section 104(b) base grant award into a single document that includes: 1) a synopsis of each student research enhancement project that was conducted during the period, 2) citations for related publications, reports, and presentations, 3) a description of information transfer activities, 4) a summary of student support during the period, and 5) notable awards and achievements.

No funds were requested for general program administration activities. However, travel funds were provided to support the participation of the director and associate director in the annual meeting of the National Institutes …

Is High Folic Acid Intake A Risk Factor For Autism?—A Review, Darrell Wiens, M. Catherine Desoto

Faculty Work

Folate is required for metabolic processes and neural development. Insuring its adequate levels for pregnant women through supplementation of grain-based foods with synthetic folic acid (FA) in order to prevent neural tube defects has been an ongoing public health initiative. However, because women are advised to take multivitamins containing FA before and throughout pregnancy, the supplementation together with natural dietary folates has led to a demographic with high and rising serum levels of unmetabolized FA. This raises concerns about the detrimental effects of high serum synthetic FA, including a rise in risk for autism spectrum disorder (ASD). Some recent studies …

Phytophthora Sojae Infecting Soybean: Pathotype Diversity, New Sources Of Resistance And Interaction With The Soybean Cyst Nematode, Rawnaq Nazneen Chowdhury

Electronic Theses and Dissertations

Phytophthora root and stem rot, caused by Phytophthora sojae Kaufmann and Gerdemann, is an important disease of soybean (Glycine max L.) in South Dakota. To gain a better understanding of the importance of P. sojae in South Dakota, specifically pathotype diversity, identification of new resistance sources and the interaction with the soybean cyst nematode (Heterodera glycines Ichinohe, SCN), this research was undertaken with the following objectives - 1) to characterize the pathotype diversity of P. sojae causing Phytophthora root and stem rot on soybean in commercial fields in South Dakota; 2) to compare inoculation methods to evaluate for …

Temporal Changes In The Larval Placopecten Magellanicus Population In A Small-Scale Fishery Closure Area In Coastal Maine, Usa, Jessica P. Batchelder

Honors Theses

The Midcoast Maine Collaborative Scallop Project was established in 2013 by fishers, scientists, and policy makers to determine if a small-scale closure area could restore the local Atlantic sea scallop (Placopecten magellanicus) population to an area in coastal Maine that previously supported high scallop densities. These stakeholders established a three by one mile closure area in the Lower Muscle Ridge Channel to assess the response of the adult and larval scallop populations. Understanding the larval dynamics in a closure area is key to evaluating the recovery potential of the population and for future population stock levels. This study …

Examining Interactions Between Opsins And Carotenoid Biosynthetic Proteins In Halophilic Archaea, Alexandru M. Plesa

Honors Theses

Organisms have evolved numerous specialized molecules for constantly responding to environmental changes. Examples of such molecules are the light-driven proton-pump rhodopsins, such as bacteriorhodopsin (BR) and cruxrhodopsin (cR), and the carotenoid pigments, such as retinal and bacterioruberin. In halophilic Archaea, retinal can covalently bind bacterioopsin (BO) and cruxopsin (CO) to form the corresponding protein complexes, and its biosynthesis is indirectly controlled by the activity of the lycopene elongase (Lye) enzyme, which converts lycopene, a retinal precursor, to a form of bacterioruberin. Interestingly, opsins were shown to inhibit the activity of Lye, thereby promoting retinal biosynthesis and indirectly regulating the apoprotein-cofactor …

The Role Of Sibling Configuration In Identity And Career Development, Alyssa Sullinger

Electronic Theses and Dissertations

This synthetic literature review examines the characteristics of sibling configurations— which refer to the ordinal position of siblings, age spacing, and sex composition—in a traditional family setting. A general review of the literature on sibling configurations and relationships is presented, and their potential roles in the development of personality traits, self-concept and identity, and career choices are explored. This synthesis describes how sibling birth rank is affiliated with generalized personality traits and likelihood of siblings with these traits identifying with corresponding career interest-types associated with Holland’s vocational theory. Suggestions for future research include empirical studies investigating these connections, such the …

Molecular Analysis Of The Mating System Of A Population Of Fantail Darter (Etheostoma Flabellare) In Bates Fork, Greene Co., Pa, Ashley Seitz

Electronic Theses and Dissertations

In May 2013, we examined the mating system of the Fantail Darter, Etheostoma flabellare, from a population inhabiting Bates Fork, a small tributary of the Monongahela River in Greene County, PA. Guarding adult male Fantail Darters excavate an area under a flat rock in moderately flowing rifles. Females select a male or his territory and deposit clusters of eggs on the underside of the nest rock. The guarding male provides all parental care. The locations of 23 nests were mapped over a 139m² stream segment before collecting embryos and attending males for a genetic parentage analysis. DNA was …

First Circumglobal Assessment Of Southern Hemisphere Humpback Whale Mitochondrial Genetic Variation And Implications For Management, Howard C. Rosenbaum, Francine Kershaw, Martín Mendez, Cristina Pomilla, Matthew S. Leslie, Ken P. Findlay, Peter B. Best, Timothy Collins, Michel Vely, Marcia H. Engel, Robert Baldwin, Gianna Minton, Michael Meÿer, Lilian Flórez-González, M. Michael Poole, Nan Hauser, Claire Garrigue, Muriel Brasseur, John Bannister, Megan Anderson, Carlos Olavarría, C. Scott Baker

Research outputs 2014 to 2021

The description of genetic population structure over a species' geographic range can provide insights into its evolutionary history and also support effective management efforts. Assessments for globally distributed species are rare, however, requiring significant international coordination and collaboration. The global distribution of demographically discrete populations for the humpback whale Megaptera novaeangliae is not fully known, hampering the definition of appropriate management units. Here, we present the first circumglobal assessment of mito - chondrial genetic population structure across the species' range in the Southern Hemisphere and Arabian Sea. We combine new and existing data from the mitochondrial (mt)DNA control region that …

Biodiversity Monitoring Using Environmental Dna: Can It Detect All Fish Species In A Waterbody And Is It Cost Effective For Routine Monitoring?, Lia Smith

Theses: Doctorates and Masters

The challenges associated with environmental monitoring such as the impact on the environment and the financial costs are problems we face when trying to conserve freshwater systems around the world. The need for precise and accurate results that are cost effective is important so that we can achieve our conservation goals.

The overall aim of this study was to explore Next-Generation - metabarcoding for the detection of feral and native freshwater fish species based on the DNA shed by individual organisms into the water column. Cytochrome c oxidase I (COI) primers were developed for this study using DNA from six …

Residence Time In Coastal Canopies, Maryam Abdolahpour

Theses: Doctorates and Masters

Aquatic canopies provide important ecosystem services such as improved water quality, oxygen flux, sediment stabilisation and trapping and recycling of nutrients. The ecological health of coastal canopies and the significant ecosystem services they provide depends largely on the continuous exchange of dissolved and particulate materials across the canopy boundaries. In coastal environments, where flow is typically wavedominated, vertical mixing is believed to be the dominant process controlling residence time and, therefore, exchange. However, experiments have shown that wave-driven flows over rough boundaries, such as canopies, generate strong onshore mean currents (75% of the orbital velocity far above the canopy) near …

Relations Between Downy/Powdery Mildew Diseases Andsome Phenolic Compounds In Vitis Spp., Ari̇f Atak, Zeki̇ye Göksel, Hüseyi̇n Çeli̇k

Turkish Journal of Agriculture and Forestry

Powdery mildew and downy mildew are among the most important diseases of grapevine. The relationship between these diseases and phenolic components has become increasingly important in recent years. This study evaluated changes of total phenolics, total antioxidant activity, and phenolic compounds (gallic acid and rutin hydrate) in some Vitis species. Vitis labrusca cultivars or genotypes, Vitis vinifera cultivars, interspecies hybrids, and a Vitis rotundifolia cultivar's healthy and infected leaves were examined. The contents of healthy material and of samples of plant material infected with both microorganisms (Uncinula necator (Schw.) Burr and Plasmopara viticola (Berk. & M.A. Curtis) Berl & De …

Characterization Of Morphological Traits Of Local And Globalpersimmon Varieties And Genotypes Collected From Turkey, Bi̇lge Yilmaz, Ayli̇n Genç, Berken Çi̇men, Meral İncesu, Turgut Yeşi̇loğlu

Turkish Journal of Agriculture and Forestry

Genetic variations are highly important in terms of plant breeding. These variations occur either spontaneously or artificially by mutations and sexual hybridizations in order to achieve specific breeding objectives. In this study, persimmon genetic resources collected from Turkey and preserved ex situ with commercial cultivars in a germplasm orchard located at Çukurova University, Turkey, were characterized based on their morphological traits. The collection was composed of traditional genotypes and local accessions together with global varieties. For the morphological characterization, 59 morphological and agronomic traits were investigated: 9 related to plant growth, 5 to leaf characteristics, 7 to flower traits, 32 …

Variation In Damage Levels By Codling Moth To Ten Applecultivars In An Organic Orchard In Poland, Witold Danelski, Dorota Kruczynska, Pawel Bielicki, Elzbieta Rozpara

Turkish Journal of Agriculture and Forestry

This study was conducted in an experimental ecological orchard in central Poland in 2011-2013. The experiment assessed the variation in damage to the fruit of ten apple cultivars by the codling moth Cydia pomonella (L.) under an organic system of apple cultivation. The cultivars were divided into two groups according to their susceptibility to apple scab Venturia inaequalis (Cooke) Wint. The first group of apple trees (A) consisted of cultivars resistant to scab (Enterprise, Gold Milenium, Rajka, Rewena, and Topaz), while the second group (B) consisted of cultivars with reduced susceptibility to scab (Delbard Jubile, Ligolina, Pinova, Piros, and Szampion). …

Change Of Arginine Content And Some Physiological Traits Under Midseason Drought In Peanut Genotypes With Different Levels Of Drought Resistance, Chorkaew Aninbon, Sanun Jogloy, Nimitr Vorasoot, Suporn Nuchadomrong, Corley Holbrook, Craig Kvien, Aran Patanothai

Turkish Journal of Agriculture and Forestry

Peanut production areas frequently suffer from drought, which can cause severe yield losses, increased aflatoxin, and compositional changes in seed. Midseason drought is generally the most detrimental to seed yields and in altering seed protein composition. The purpose of this study was to investigate the effect of midseason drought on arginine content in peanut genotypes with different levels of drought resistance. The experiment was conducted under field conditions for 2 years. Two water regimes (well-watered conditions and no irrigation during 30-60 days after planting) were assigned as main plots, and five peanut genotypes were arranged in subplots. Arginine content of …

De Novo Transcriptome Assembly And Ssr Marker Development In Apricot (Prunus Armeniaca), Muhammed Ali̇ Köse, Necati̇ Çeti̇nsağ, Kahraman Gürcan

Turkish Journal of Agriculture and Forestry

Apricot (Prunus armeniaca) is an important fruit crop worldwide. We have performed a de novo transcriptome assembly for 7 apricot accessions (`Stark Early Orange' (SEO), `Hacıhaliloğlu' (HH), `Perfection', `Iğdır', `Roxana', `Esen1', and `Esen2'), which yielded a total number of transcripts ranging from 30,363 for `SEO' to 59,751 for `Iğdır'. The pool of the reads produced from 7 accessions were assembled into 85,766 transcripts, with an average of 1165.69 nt. Functional annotation (Gene Ontology- GO and Kyoto Encyclopedia of Genes and Genomes- KEGG) was performed successfully for the transcripts. Simple sequence repeats (SSRs) were searched in the transcript pool and 14,722 …

Evaluation Of Disease Intensity And Molecular Identification Of Zymoseptoria Tritici Causing Septoria Leaf Blotch On Wheat In The Eastern Mediterranean Region Of Turkey, Gülsüm Ünal, Mukaddes Kayim, Tahsi̇n Ay, Amin Mohammed Yones

Turkish Journal of Agriculture and Forestry

Wheat is one of the most important crops in Turkey. Production of this crop is constrained by the disease Septoria leaf blotch, which is a major bottleneck in wheat production in the Eastern Mediterranean Region of Turkey. In this study, 260 different wheat fields were surveyed for the estimation of prevalence and severity of Septoria leaf blotch. Out of 100% of the total wheat crop fields, 58.91% were infected with this disease. The mean value of Septoria leaf blotch virulence was 11.62%. Out of 142 diseased wheat crop samples, 74 isolates were used for the pathogenicity test. Forty-seven isolates from …

The Effect Of Post-Translational Modifications On Icer's Function And Localization, Dina H. Edani

Theses, Dissertations and Culminating Projects

Inducible cAMP early repressor (ICER) is an endogenous repressor of cAMPresponsive element (CRE) with antiproliferative properties that acts as a potential suppresser for tumors especially melanoma. ICER activity and cellular localization are orchestrated by the performance of the post-translational modifications (PTMs). Ubiquitination and sumoylation are two of the most important types of PTMs that control diverse groups of biological processes for ICER protein. The goal of this project is to study how post-translational modifications alter the function of the transcriptional repressor Inducible cAMP Early Repressor (ICER) in melanoma cells. Since ICER ubiquitination and sumoylation processes take place on the interaction …

Evaluation Of Ecto-Mycorrhizae As A Determinant Of Chestnut Growth And Stress Response, Pabitra Aryal

Masters Theses

Although agriculture focuses on row crops throughout much of the Midwest, chestnut (Castanea spp.) appears to be an agroforestry crop well suited as a sustainable alternative to row crops in areas prone to erosion. As ectomycorrhizal (ECM) colonization is often crucial for tree establishment and production, I addressed the importance of ECM colonization on chestnut performance by assessing 1) natural ECM colonization in an established chestnut orchard and 2) the effect of experimental ECM inoculation on seedling establishment and drought response in a greenhouse. In the established orchard, I selected 50 Chinese-American hybrid chestnuts (C. mollisima x C. dentata …