Life Sciences Commons^™

Modeling Gross Primary Production Of Midwest Maize And Soybean Croplands With Satellite And Gridded Weather Data, Gunnar Malek-Madani

Department of Geography: Dissertations, Theses, and Student Research

The gross primary production (GPP) metric is useful in determining trends in the terrestrial carbon cycle. Models that determine GPP utilizing the light use efficiency (LUE) approach in conjunction with biophysical parameters that account for local weather conditions and crop specific factors are beneficial in that they combine the accuracy of the biophysical model with the versatility of the LUE model. One such model developed using in situ data was adapted to operate with remote sensing derived leaf area index (LAI) data and gridded weather datasets. The model, known as the Light Use Efficiency GPP Model (EGM), uses a four …

Foraging Behavior Of Spring Bees And Their Agricultural Implications, Michael D. Gregory

Biological Sciences Theses & Dissertations

Colony Collapse Disorder has greatly reduced honey bee populations in the last decade. Native bees have been largely neglected in research, and their floral preferences may have agricultural implications because native bees ameliorate the demand to rely solely on non-native bees. In this work, pollinator visitation to flowers with manipulated ultraviolet floral patterns was monitored. Populations of wild showy golden-eye in Colorado, plus cultivar populations of black-eyed Susan and lawn populations of buttercups in Virginia were monitored for pollinator landings to compare preference for unmanipulated ultraviolet-absorptive floral guide preferences. Another number, a proxy for pollen load, was manipulated on strawberry …

Atypical Teratoid/ Rhabdoid Tumor Of Brain: A Clinicopathologic Study Of Eleven Patients And Review Of Literature, Nasir Ud Din, Abrar Barakzai, Aisha Memon, Sheema Hasan, Zubair Ahmad

Department of Pathology and Laboratory Medicine

Creative Commons Attribution LicenseBackground: Atypical teratoid/ rhabdoid tumor (AT/RT) is a rare aggressive embryonal central nervous system(CNS) tumor of infancy and early childhood. Majority of the cases arise in the posterior fossa, and remaining in thecerebrum. Aims: To analyze the clinicopathologic features of AT/RT on a cohort of cases. Materials and methods:All reported cases of AT/RT at the Department of Pathology and Laboratory Medicine, Aga Khan University Hospital(AKUH) from 2007 to 2016 were reviewed for clinical and pathological features. Immunohistochemical stain for INI-1was performed in all 11 cases. Follow up was obtained. Results: A total of 11 cases were identified. …

A Threshold Of Transmembrane Potential Is Required For Mitochondrial Dynamic Balance Mediated By Drp1 And Oma1, Edith Jones, Norma Gaytan, Iraselia Garcia, Alan Herrera, Manuel Ramos, Divya Agarwala, Maahrose Rana, Wendy Innis-Whitehouse, Erin Schuenzel, Robert Gilkerson

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

As an organellar network, mitochondria dynamically regulate their organization via opposing fusion and fission pathways to maintain bioenergetic homeostasis and contribute to key cellular pathways. This dynamic balance is directly linked to bioenergetic function: loss of transmembrane potential across the inner membrane (Dwm) disrupts mitochondrial fission/fusion balance, causing fragmentation of the network. However, the level of Dwm required for mitochondrial dynamic balance, as well as the relative contributions of fission and fusion pathways, have remained unclear. To explore this, mitochondrial morphology and Dwm were examined via confocal imaging and tetramethyl rhodamine ester (TMRE) flow cytometry, respectively, in cultured 143B osteosarcoma …

Neuroscience Changes More Than You Can Think, Paul S. Davies, Peter A. Alces

Faculty Publications

In this Essay, we consider the contribution of a startling new book, Law & Neuroscience (L&N), by Owen Jones, Jeffrey Schall, and Francis Shen. It is a law school course book (a genre not often the focus of a scholarly review essay) that supports fundamental inquiry into the relationship between emerging neuroscientific insights and doctrinal conceptions in the law. We believe that the book shifts the paradigm and so may profoundly affect the course of normative evaluation of law. In this Essay, we trace and evaluate the “argument” of the book and suggest ways in which its contribution to the …

Each To Their Own Cure: Faculty Who Teach Course-Based Undergraduate Research Experiences Report Why You Too Should Teach A Cure, Erin E. Shortlidge, Gita Bangera, Sara Brownell

Biology Faculty Publications and Presentations

Course-based undergraduate research experiences (CUREs) meet national recommendations for integrating research experiences into life science curricula. As such, CUREs have grown in popularity and many research studies have focused on student outcomes from CUREs. Institutional change literature highlights that understanding faculty is also key to new pedagogies succeeding. To begin to understand faculty perspectives on CUREs, we conducted semi-structured interviews with 61 faculty who teach CUREs regarding why they teach CUREs, what the outcomes are, and how they would discuss a CURE with a colleague. Using grounded theory, participant responses were coded and categorized as tangible or intangible, related to …

The Importance Of Increasing Milk Quality By Deceasing The Somatic Cell Count (Scc), Kelci Dalton, C. Israelsen, A.J. Young

All Current Publications

No abstract provided.

Natural Killer (Nk) Cells And Their Involvement In Different Types Of Cancer. Current Status Of Clinical Research, Isadora Zaharescu, Adina D. Moldovan, Cristiana Tanase

Journal of Mind and Medical Sciences

Natural killer cells are the main agents of innate immunity. Since 1970, various studies have repeatedly confirmed their involvement in decreasing local tumor growth and also decreasing the risk of metastasis, due to their cytotoxic effects and also through the release of immunostimulatory cytokines such as IFN-gamma. In the 1990s, several studies demonstrated the existence of certain inhibiting and stimulating receptors of these cells, leading to the concept of “induced self”, thus explaining why tumors with MHC-1 are destroyed and autologous cells without it are saved out. Recognition and destruction of tumor cells by the NK cells are the result …

Enzyme-Dependent Fluorescence Recovery Of Nadh After Photobleaching To Assess Dehydrogenase Activity Of Isolated Perfused Hearts., Angel Moreno, Sarah Kuzmiak-Glancy, Rafael Jaimes, Matthew W Kay

Pharmacology and Physiology Faculty Publications

Reduction of NAD(+) by dehydrogenase enzymes to form NADH is a key component of cellular metabolism. In cellular preparations and isolated mitochondria suspensions, enzyme-dependent fluorescence recovery after photobleaching (ED-FRAP) of NADH has been shown to be an effective approach for measuring the rate of NADH production to assess dehydrogenase enzyme activity. Our objective was to demonstrate how dehydrogenase activity could be assessed within the myocardium of perfused hearts using NADH ED-FRAP. This was accomplished using a combination of high intensity UV pulses to photobleach epicardial NADH. Replenishment of epicardial NADH fluorescence was then imaged using low intensity UV illumination. NADH …

2016 Oyster Reef Restoration Project Funded By The Aquatic Resources Mitigation Program, Raymond E. Grizzle, Krystin M. Ward

PREP Reports & Publications

This report describes the results of the construction and initial monitoring phase of an oyster restoration project conducted in 2016 by the University of New Hampshire (UNH) and The Nature Conservancy (TNC), funded by the New Hampshire Aquatic Resources Mitigation Program. The overall goal of the project was to construct 5 acres of new oyster reef habitat in an area adjacent to a live natural reef northwest of Nannie Island, in the Town of Newington, NH, off Woodman Point. The report is organized according to the four major tasks listed as deliverables in the subaward to UNH from TNC.

Nonlinear Responses Of Soil Respiration To Precipitation Changes In A Semiarid Temperate Steppe, Yuan Miao, Hongyan Han, Yue Du, Qian Zhang, Lin Jiang, Dafeng Hui, Shiqiang Wan

Biology Faculty Research

Extreme precipitation events are predicted to occur more frequently and will have significant influences on terrestrial ecosystem carbon (C) cycling in the future. However, response patterns of soil respiration to precipitation changes remain uncertain in terrestrial ecosystems. A field experiment with seven precipitation treatments (i.e. from −60% to +60% of ambient precipitation to form a drought to wet precipitation gradient) was conducted over three growing seasons (2010–2012) in a semiarid temperate steppe of Northern China. Results showed a nonlinear response pattern of soil respiration along the experimental precipitation gradient, with soil respiration suppressed by decreased precipitation and enhanced by increased …

New Neotropical Rhinotragini And A New Country Record For Nicaragua (Coleoptera: Cerambycidae: Cerambycinae), James E. Wappes, Antonio Santos-Silva

Insecta Mundi

Nine new species of Rhinotragini (Coleoptera: Cerambycidae: Cerambycinae) are described from the Neotropical region: Odontocera galileoae (Mexico); Odontocera mthomasi (Guatemala); Ecliptoides vandenberghei (Nicaragua); Eclipta ricei and Odontocera skelleyi (Costa Rica); Eclipta nearnsi (Panama); Odontocera stangei (Venezuela); Chariergodes lingafelteri and Ischasia martinsi (Costa Rica and Panama). Ischasia rufina Thomson, 1864 is formally excluded from the fauna of Costa Rica and Panama, and Nicaragua is added as a new country record for Eclipta ficta Bezark, Martins and Santos-Silva, 2013. Notes on Ecliptoides monostigma (Bates, 1869) are provided in the “Diagnosis” of E. vandenberghei.

High resolution version attached as a Supplementary file (below).

Reactivity Of Ketyl And Acetyl Radicals From Direct Solar Actinic Photolysis Of Aqueous Pyruvic Acid, Alexis J. Eugene, Marcelo I. Guzman

Chemistry Faculty Publications

The variable composition of secondary organic aerosols (SOA) contributes to the large uncertainty for predicting radiative forcing. A better understanding of the reaction mechanisms leading to aerosol formation such as for the photochemical reaction of aqueous pyruvic acid (PA) at λ ≥ 305 nm can contribute to constrain these uncertainties. Herein, the photochemistry of aqueous PA (5-300 mM) continuously sparged with air is re-examined in the laboratory under comparable irradiance at 38° N at noon on a summer day. Several analytical methods are employed to monitor the time series of the reaction, including (1) the derivatization of carbonyl (C═O) functional …

Direct Drilling Comes To Australia Via W.A., Geoff Pearce

All other publications

The story which follows tells how Imperial Chemical Industries (ICI) from the U.K. changed the method of planting cereal crops used in W.A. for 40 years, by replacing cultivation with a herbicide spray. The main reason for cultivation is to prevent the growth of weeds in the crop. There are other benefits to be gained.

Topological And Thermodynamic Factors That Influence The Evolution Of Small Networks Of Catalytic Rna Species, Jessica Anne Mellor Yeates, Philippe Nghe, Niles Lehman

Chemistry Faculty Publications and Presentations

An RNA-directed recombination reaction can result in a network of interacting RNA species. It is now becoming increasingly apparent that such networks could have been an important feature of the RNA world during the nascent evolution of life on the Earth. However, the means by which such small RNA networks assimilate other available genotypes in the environment to grow and evolve into the more complex networks that are thought to have existed in the prebiotic milieu are not known. Here, we used the ability of fragments of the Azoarcus group I intron ribozyme to covalently self-assemble via genotype-selfish and genotype-cooperative …

Mutational Analysis Of The Qrrq Motif In The Yeast Hig1 Type 2 Protein Rcf1 Reveals A Regulatory Role For The Cytochrome C Oxidase Complex, Joshua Garlich, Valentina Strecker, Ilka Wittig, Rosemary A. Stuart

Biological Sciences Faculty Research and Publications

The yeast Rcf1 protein is a member of the conserved family of proteins termed the hypoxia-induced gene (domain) 1 (Hig1 or HIGD1) family. Rcf1 interacts with components of the mitochondrial oxidative phosphorylation system, in particular the cytochrome bc₁(complex III)-cytochrome c oxidase (complex IV) supercomplex (termed III-IV) and the ADP/ATP carrier proteins. Rcf1 plays a role in the assembly and modulation of the activity of complex IV; however, the molecular basis for how Rcf1 influences the activity of complex IV is currently unknown. Hig1 type 2 isoforms, which include the Rcf1 protein, are characterized in part by the presence …

Undergraduate Research On General Aviation Hypoxia: A Student's Perspective, Timothy B. Holt, Jacqueline Luedtke, Claire G. Schindler

Publications

The problem this study addresses is the uncertainty of the common circumstances that general aviation pilots find themselves in that create a hypoxic state, as well as whether or not that pilot reported the occurrence to the proper establishments. The results of this study showed not only those that were impacted the greatest by hypoxia, but also a caring concern for reporting these events. The key elements for this research were:

• Level of flying experience that encountered hypoxia

• Reporting statistics

• Reasons for not reporting the event

• Suggestions for bettering flight physiology training

Smokejumper Obituary: Ford, Dean W. (Pilot 0000), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Dollars From The Sea: Jacksonville And The Ocean Business, Committee Of 100 Jacksonville Area Chamber Of Commerce

City and Regional Planning -- Florida

Book details Jacksonville's oceanographic history 1967-1974

Draft Genome Sequences Of Three Cellulolytic Bacillus Licheniformis Strains Isolated From Imperial Geyser, Amphitheater Springs, And Whiterock Springs Inside Yellowstone National Park, Joshua A. O'Hair, Hui Li, Santosh Thapa, Matthew Scholz, Suping Zhou

Agricultural and Environmental Sciences Faculty Research

Novel cellulolytic microorganisms are becoming more important for rapidly growing biofuel industries. This paper reports the draft genome sequences of Bacillus licheniformis strains YNP2-TSU, YNP3-TSU, and YNP5-TSU. These cellulolytic isolates were collected from several hydrothermal features inside Yellowstone National Park.

Where Did The Birds Go?, Brinnlie Harward, Kim Sullivan, Josh Wardle

Biology Posters

Birds on campus have had an extremely high death rate near University Inn in past years. The trees on the west side of the building are within the kill zone. The kill zone is 15-30 feet away from the building.

Honey Fungus: A Silent Killer, Michael Gudmundson, Jim Lutz

Biology Posters

Armillaria root disease is found in many temperate and tropical forests throughout the world. It is responsible for on average 2-3 % of mortalities in infected forests. This root disease is caused by many species of fungus from the Armillaria genus. They are commonly referred to as Honey Fungus. This fungus spreads mainly through the interaction of tree roots. The Wind River Forest Dynamics Plot shows evidence of an infection by Armillaria. However the Extent of the infection has not been studied or mapped. Research Question : How much of the WFDP is infected and what are the effects of …

Bird Strikes At Usu, Jonas Johnson, Kim Sullivan

Biology Posters

According to the American Bird Conservancy, up to one billion birds are killed in the United States every year by window collisions.

Global Analysis Of Population Growth And Decline, Mark Sneddon, William D. Pearse

Biology Posters

Species of plants and animals have populations that are declining at a rapid rate and possibly face extinction. To combat this decline, we must first understand where and why species are declining. We compared known species population growth rates in the COMPADRE (7024 different plant populations) and COMADRE (1927 different animal populations) databases to a variety of possible factors and other databases.

Transcript Levels Of Salt Tolerant Candidate Genes In Turfgrasses, Thomas Sprouse, Shaun Bushman, Paul Johnson

Biology Posters

Cool season turfgrasses have necessary functions in the landscape, but are associated with excessive water use. Cities have begun to reuse water for outdoor purposes as a response to a shrinking water supply, this ‘effluent’ water has higher salt content. This high salt content puts turfgrasses under increased stress. The focus of our research is to investigate the involvement of two genes in salt tolerance among turfgrass species: an H-type thioredoxin (Trx) that reduces oxidative damage within salt stressed cells, and a vacuolar (v-type) ATPase subunit that transports +H ions across the vacuole membrane to maintain osmotic potential under higher …

Will A Game Cause Increased Fruit/Vegetable Intake And Physical Activity In Elementary School Children?, Derek Trimble

Biology Posters

Background Incentives increase healthy lifestyle choices. Schools don’t have financial resources for an incentive program. Research Question Is there a way to increase fruit and vegetable intake and physical activity in elementary school children at little or no cost to the school?

Transformation Of Lactic Acid Bacteria, Bryan Coburn

Biology Posters

Lactococcus lactis (strain JB704) bacterial cells were transformed at 2500 Volts, 25 µF, and 200 Ω with the pTW8 vector. However, bacterial cells were grown and pre-treated differently. One culture of recipient cells was grown in MRS without 1% glycine and received no pre-treatment, were pre-treated for 30’ with water, or were pre-treated for 30’ with 100 mM lithium acetate and 10 mM dithiothreitol (DTT); a second culture of recipient cells was grown in MRS with 1% glycine and received no pre-treatment, were pretreated for 30’ with water, or were pre-treated for 30’ with 100 mM lithium acetate and 10mM …

Generation Of Polyclonal Rabbit Antisera Specific To The Zika Virus Capsid Protein, Michael C. Berentzen, Jordan C. Frank, Sang-Im Yun, Byung-Hak Song, Young-Min Lee

Biology Posters

Zika virus (ZIKV), a mosquito-borne flavivirus, is an emerging zoonotic pathogen closely related to Japanese encephalitis virus, West Nile virus, dengue virus, and yellow fever virus. Although ZIKV infection generally produces only mild symptoms in some infected individuals, it has recently been associated with a growing number of neurological diseases, including Guillain-Barré syndrome in ZIKV-infected adults and microcephaly in infants born to ZIKV-infected women. Like all flaviviruses, ZIKV has a plus-strand RNA genome encoding ten functional proteins (designated C, prM, E, NS1, NS2A, NS2B, NS3, NS4A, NS4B, and NS5). Of these ten, the C (capsid) protein is an essential structural …

Virus Survival Without Hosts, Cody J. Bills, Craig W. Day

Biology Posters

It is important to always clean up using proper chemicals following working with a virus. Failure to do so may leave active virus on a surface or in a medium and present a potential hazard. This study was done to determine if viruses from the Flaviviridae, Adenoviridae, and Picornaviridae families can remain active for more than three weeks on a dry surface or in a liquid medium.

It Pays To Protect The Birds: Estimated Costs Of Collision-Proofing Skywalks On Usu Campus, Rachel Sagers, Kim Sullivan

Biology Posters

No abstract provided.