Chemical Engineering Commons^™

Metabolic Modeling And Omics-Integrative Analysis Of Single And Multi-Organism Systems: Discovery And Redesign, Mohammad Mazharul Islam

Department of Chemical and Biomolecular Engineering: Dissertations, Theses, and Student Research

Computations and modeling have emerged as indispensable tools that drive the process of understanding, discovery, and redesign of biological systems. With the accelerating pace of genome sequencing and annotation information generation, the development of computational pipelines for the rapid reconstruction of high-quality genome-scale metabolic networks has received significant attention. These models provide a rich tapestry for computational tools to quantitatively assess the metabolic phenotypes for various systems-level studies and to develop engineering interventions at the DNA, RNA, or enzymatic level by careful tuning in the biophysical modeling frameworks. in silico genome-scale metabolic modeling algorithms based on the concept of optimization, …

Utilization Of Electric Arc Furnace Dust As A Solid Catalyst In Biodiesel Production, Khaled El-Araby Khodary, Marwa Mohamed Naeem, Mai H. Roushdy

Chemical Engineering

World’s energy sources like petrochemical oils, natural gas and coal cause global warming and environmental pollution. Therefore, the traditional energy sources must be replaced by the renewable energy resources. Biodiesel has been recognized as one of the effective, green, renewable and sustainable fuels. This paper investigates the production of biodiesel from sunflower oil by using electric arc furnace dust (EAFD) as a heterogeneous solid catalyst. Four reaction variables, i.e., the reaction time, methanol-to-oil (M/O) molar ratio, reaction temperature and EAFD loading, were chosen to determine their effect on biodiesel production. The effect of the all reaction variables on the biodiesel …

Degumming Of Hemp Fibers Using Combined Microwave Energy And Deep Eutectic Solvent, Bulbul Ahmed

LSU Master's Theses

Hemp is considered as one of the sustainable agricultural fiber materials. Degumming or surface modification of hemp bast is needed to produce single fibers for ensuing textile and industrial applications. The traditional degumming process necessitates a high amount of alkali, which causes detrimental environmental pollution. This study offers a new method to degum hemp fibers with reduced use of harmful alkali and precious water resources. In this work, hemp bast fibers were degummed by using combined microwave energy and deep eutectic solvent (DES). The properties of hemp fibers manufactured by this method were investigated and compared with the traditional alkali …

Gas Evolution Phenomenon Of Methane In Base Fluids Of Non-Aqueous Drilling Muds Under Controlled Depressurization, Damilola Ojedeji

LSU Master's Theses

As wells become more complex and drilling conditions to reach targets prove even more challenging, being able to detect influx event early and safely handle these influxes has become one of the most important focus areas for improvement in well control safety. The high solubility of formation gas in non-aqueous drilling fluids however makes kick detection and safe handling of kicks more complicated. Recent studies are beginning to incorporate desorption kinetics in well control models to simulate the transient multiphase flow phenomenon associated with gas kicks in non-aqueous drilling fluids to foster safe handling of kicks. However, there is currently …

Integrating Design Thinking In Chemical Engineering Coursework For Enhanced Student Learning, J. P. Stengel, S. S. Jerpoth, Kirti M. Yenkie

Henry M. Rowan College of Engineering Departmental Research

In the engineering discipline, it is of utmost importance to give value to applied learning because as engineers, we are expected to innovate, and innovations happen when theoretical ideas are implemented successfully. Design thinking is one such approach that can enhance the value of theoretical concepts and motivate the students to visualize their ideas in more meaningful ways. The five stages of design thinking include: (i) Empathize, (ii) Define, (iii) Ideate, (iv) Prototype, and (v) Test. The traditional engineering curriculum focuses on the last four stages and thus leads to a skewed perspective among students with regards to problem definition, …

Water Regulation For Enhancing Soil Quality Using Cactus Mucilage: A Theoretical And Experimental Analysis, Khuloud Alrashdi

USF Tampa Graduate Theses and Dissertations

As water is one of the primary sources of life, it is essential in an endless number of systems and processes to be utilized efficiently in nature and in practical applications. One of these applications includes farming, which depletes a lot of water as the water irrigation systems cover large soil areas. While water is a critical factor in growing crops, a question here stands, can the irrigation process be transformed? This is the overarching goal of my work since it is centered on studying if cactus mucilage, a natural substance, is capable of improving water absorption processes on crops …

The Impact Of Micro Porous Layer On Liquid Water Evolution Inside Pemfc Using Lattice Boltzmann Method, Mitchell Sepe, P. Satjaritanun, I. V. Zenyuk, N. Tippayawong, Sirivatch Shimpalee

Faculty Publications

Proton exchange membrane fuel cells (PEMFCs) require a gas diffusion layer to aid in fuel transport to the catalyst sites. A microporous layer (MPL) is often added to the GDL to improve liquid saturation inside gas diffusion media. In this work, the lattice Boltzmann method was applied to four GDL samples with the addition of an MPL. Three injection orientations were used to study liquid evolution through the samples. Each orientation used four different injection pressures, ranging from 5,000 Pa to 8,000 Pa. Saturation data for GDL samples with and without an MPL were compared. Results showed that when adding …

Fischer–Tropsch Synthesis For Light Olefins From Syngas: A Review Of Catalyst Development, Arash Yahyazadeh, Ajay K. Dalai, Wenping Ma, Lifeng Zhang

Center for Applied Energy Research Faculty and Staff Publications

Light olefins as one the most important building blocks in chemical industry can be produced via Fischer–Tropsch synthesis (FTS) from syngas. FT synthesis conducted at high temperature would lead to light paraffins, carbon dioxide, methane, and C5+ longer chain hydrocarbons. The present work focuses on providing a critical review on the light olefin production using Fischer– Tropsch synthesis. The effects of metals, promoters and supports as the most influential parameters on the catalytic performance of catalysts are discussed meticulously. Fe and Co as the main active metals in FT catalysts are investigated in terms of pore size, crystal size, and …

Hydrochloric Acid Modification And Lead Removal Studies On Naturally Occurring Zeolites From Nevada, New Mexico, And Arizona, Garven M. Huntley, Rudy Luck, Michael Mullins, Nick Newberry

Michigan Tech Publications, Part 1

Four naturally occurring zeolites were examined to verify their assignments as chabazites AZLB-Ca and AZLB-Na (Bowie, Arizona) and clinoptilolites NM-Ca (Winston, New Mexico) and NV-Na (Ash Meadows, Nevada). Based on powder X-ray diffraction, NM-Ca was discovered to be mostly quartz with some clinoptilolite residues. Treatment with concentrated HCl (12.1 M) acid resulted in AZLB-Ca and AZLB-Na, the chabazite-like species, becoming amorphous, as confirmed by powder X-ray diffraction. In contrast, NM-Ca and NV-Na, which are clinoptilolite-like species, withstood boiling in concentrated HCl acid. This treatment removes calcium, magnesium, sodium, potassium, aluminum, and iron atoms or ions from the framework while leaving …

Epoxy Curing: Paramount Or Trivial? A Cure Path Dependent Inquiry, Jared Bates

Dissertations

The presented research delves into epoxy network formation corroborating reactant concentration profiles and physical property development throughout cure, providing an experimental basis for burgeoning molecular dynamics and coarse-grained simulation methodologies. Herein, three primary subjects were investigated: the first two examine neat and toughened epoxide/amine network formation with respect to various cure profiles aimed at altering reaction pathways, the final chapter intends to augment traditionally utilized activation energy (E_a) methodologies.

Neat and toughened epoxide/amine slurries were monitored in-situ throughout cure via near infrared (NIR) spectroscopy and rheological techniques. Functional group conversion and moduli development were related with specific attention …

Computational Investigation Of Biological Membranes, Allyson Karmazyn

Theses - ALL

Lipids are the building blocks of biological membranes, and the types of lipids that compose these cellular envelopes influence the physicochemical properties of the chemicals that can enter or exit the cell across the membrane. This work focuses on the lipid membrane compositions of eukaryotic (red blood cells) and prokaryotic (Pseudomonas aeruginosa) membranes. By analyzing the lipid-lipid and lipid-protein interactions results of the computational simulations, insights into lipid aggregation, bilayer leaflet behavior, membrane asymmetry, and small molecule transport through protein channels were obtained. The differences between prokaryotic and eukaryotic cell membranes are qualitative known; however, this work provides these concepts …

Lipoprotein-Induced Increases In Cholesterol And 7-Ketocholesterol Result In Opposite Molecular-Scale Biophysical Effects On Membrane Structure, Manuela A.A. Ayee, Irena Levitan

Faculty Work Comprehensive List

Under hypercholesterolemic conditions, exposure of cells to lipoproteins results in a subtle membrane increase in the levels of cholesterol and 7-ketocholesterol, as compared to normal conditions. The effect of these physiologically relevant concentration increases on multicomponent bilayer membranes was investigated using coarse-grained molecular dynamics simulations. Significant changes in the structural and dynamic properties of the bilayer membranes resulted from these subtle increases in sterol levels, with both sterol species inducing decreases in the lateral area and inhibiting lateral diffusion to varying extents. Cholesterol and 7-ketocholesterol, however, exhibited opposite effects on lipid packing and orientation. The results from this study indicate …

Development Of Computational Antibiotic Screening Platform Across Bacterial Outer Membrane Proteins, Yinghui Dai

Dissertations - ALL

Antibiotics are medicines used to treat bacterial infections by either killing bacteria or stopping them from reproducing. Throughout the use of antibiotics, bacteria has developed a variety of defense mechanisms against antibiotics and thus diminishing their effectiveness. Antibiotic resistance is a growing threat and becomes a global crisis as it is able to constantly evolve and rapidly spread. In the face of increasing bacterial resistance to all known antibiotics, there is an urgent need to accelerate the antibiotic discovery pipeline and discover new classes of antibiotics. A major bottleneck in the discovery of novel antibiotics is the limited permeability of …

Enhanced Oil Recovery In Tight Rocks Using The “Slot-Drill” Completion, Hassan Amer

LSU Master's Theses

Enhanced oil recovery (EOR) is essential in shale/tight formations because primary recovery typically produces less than 10% of the original hydrocarbon in-place (OHIP). This work presents a novel “slot-drill” EOR technology, which involves injecting gas through a horizontal fracture that is cut into the formation near the top of the reservoir (using a tensioned abrasive cutting cable mounted to the drillstring) and producing oil from a second slot-drilled horizontal fracture near the bottom of the reservoir.

The dusty-gas diffusion model was implemented in a compositional simulator to account for the diffusion mechanism expected during the injection of gases in this …

Mutational Analysis Of Latency Associated Peptide For Therapeutic Application, Johnny Will Stephens

USF Tampa Graduate Theses and Dissertations

TGF-β is an important protein for regulation of the immune system, and has been linked to promotion of tumor progression and cancer growth. Inhibiting TGF-β has been shown to be an effective therapeutic technique for fighting multiple cancer types. Engineering TGF-β’s natural inhibitor, Latency Associated Peptide (LAP), to improve its biophysical properties has potential to increase therapeutic efficacy.

Rosetta and FoldX can be used in concert to engineer stabilizing mutations of proteins. In accordance with this, PyRosetta and FoldX were used to predict stabilizing mutations of LAP. The most stabilizing mutations from each program were combined with mutually predicted mutations. …

Nanoparticles For Targeted Drug Delivery To Cancer Stem Cells: A Review Of Recent Advances, Yavuz Nuri Ertas, Keyvan Abedu Dorcheh, Ali Akbari, Esmaiel Jabbari

Faculty Publications

Cancer stem cells (CSCs) are a subpopulation of cells that can initiate, self-renew, and sustain tumor growth. CSCs are responsible for tumor metastasis, recurrence, and drug resistance in cancer therapy. CSCs reside within a niche maintained by multiple unique factors in the microenvironment. These factors include hypoxia, excessive levels of angiogenesis, a change of mitochondrial activity from aerobic aspiration to aerobic glycolysis, an upregulated expression of CSC biomarkers and stem cell signaling, and an elevated synthesis of the cytochromes P450 family of enzymes responsible for drug clearance. Antibodies and ligands targeting the unique factors that maintain the niche are utilized …

Preparation And Characterization Of Single Layer Conducting Polymer Electrochromic And Touchchromic Devices, Sharan Kumar Indrakar

USF Tampa Graduate Theses and Dissertations

Electrochromic devices (ECDs) have triggered great interest because of their potential applicability in energy-efficient buildings and low power display systems, including reflective type smart windows/mirrors and wearable-flexible devices. In the past decades, electrochromic technologies with different device structures and materials have been proposed. The idea of employing a simple device structure with a durable, cost effective electrolyte is crucial to designing and manufacturing high-performance ECDs. With this idea in mind, this thesis describes the various efforts to develop a simple ECD comprising of a composite single active layer gel electrolyte, sandwiched between two transparent conducting electrodes, lasting over 10,000 cycles …

Phase-Field Modeling Of The Polymer Membrane Formation Process For Micro- And Ultra-Filtration, Michael Rosario Cervellere

Graduate Theses and Dissertations

Porous polymer membrane filters are widely used in separation and filtration process. Micro- and ultra-filtration membranes are commonly used in biopharmaceutical applications such as filtering viruses and separating proteins from a carrier solution. The formation of these membrane filters via phase inversion is a complex and interconnected process where varying casting conditions can have a wide variety of effects on the final membrane morphol- ogy. Tailoring membrane filters for specific performance characteristics is a tedious and time consuming process. The time and length scales of membrane formation make it extremely difficult to experimentally observe membrane formation. Modeling the membrane formation …

Heterogeneous Extended Langmuir Model With A Truncated Multi-Normal Energy Distribution For Fitting Unary Data And Predicting Mixed-Gas Adsorption Equilibria, Sofia Tosso

Theses and Dissertations

A heterogeneous extended Langmuir model (HEL) that uses a truncated frequency energy distribution based on a one, two or three normal distributions is presented to predict gas adsorption mixtures of single, binary, and ternary gas experimental data involving CO2, H2S and C3H8 on H-modernite reported in the work of Ritter et al (1986) in terms of both solid phase molar fractions and total loadings. These models were initially fitted against single gas data and then used to predict binary data and to establish the type of perfect correlations, whether positive or negative, exist amongst these three species. The models then …

Solvent Effect Modeling In Heterogenous Catalysis, Mehdi Zare

Theses and Dissertations

In recent years, the biorefining industry and biofuels have emerged as a major American energy sector. Biofuels are fuels produced from plant and animal material, also referred to as biomass. This includes wood products, manure, and corn, among other materials. Compared to fossil fuels, biofuels are significantly more environmentally friendly and thus pose less of a threat to environmental health. In 2019, the United States consumed around 14.54 billion gallons of ethanol and around 1.81 billion gallons of biodiesel. By 2030, the United States is expected to consume around 95 Mtoe of biofuels. In order to meet current demand and …

Distributed Modeling Approach For Electrical And Thermal Analysis Of High-Frequency Transistors, Amirreza Ghadimi Avval

Graduate Theses and Dissertations

The research conducted in this dissertation is focused on developing modeling approaches for analyzing high-frequency transistors and present solutions for optimizing the device output power and gain. First, a literature review of different transistor types utilized in high-frequency regions is conducted and gallium nitride high electron mobility transistor is identified as the promising device for these bands. Different structural configurations and operating modes of these transistors are explained, and their applications are discussed. Equivalent circuit models and physics-based models are also introduced and their limitations for analyzing the small-signal and large-signal behavior of these devices are explained. Next, a model …

Investigation Of Membrane Based Processes For Biomedical Applications, Efecan Pakkaner

Graduate Theses and Dissertations

As substantial developments were achieved in nanotechnology and polymer engineering, especially in the last few decades, the use of membranes and membrane-based procedures was found to be expanding into more and more research and development areas; including biological engineering, life sciences and biomedical engineering. Not only have they been the main focus of meaningful research, but they have also been the main pieces of the solutions to very thorny problems encountered within a wide range of applications from microfluidics to water treatment, thanks to their versatility, cost-effectiveness and biocompatibility, when compared to conventional separation techniques. To celebrate and embrace these …

Investigation Of Polymer-Plasticizer Blends For Btex Detection Using Quartz Crystal Microbalance, Abhijeet Iyer

USF Tampa Graduate Theses and Dissertations

Volatile organic compounds (VOCs) are chemicals that evaporate easily and become gases at ambient temperature and pressure. The EPA has made the monitoring of VOCs mandatory due to their health impacts, which range from headaches and nausea to cancer. The current techniques used for VOC monitoring such as photoionization, gas chromatography, mass spectroscopy, and e-noses sensors are expensive, time-intensive, demand rigorous sample preparation, and cannot quantify the VOCs in the air. Chemical sensors based on piezoelectric transduction like the quartz crystal microbalance (QCM) show promising results in terms of providing cost-effective real-time data, robustness, and low power requirements. In this …

A Portable Point-Of-Care Device Using Joule Heating And Latent Energy Storage For The Temperature Regulation Of Isothermal Nucleic Acid Amplification Tests, Aubrey Lynn Schultz

Graduate Theses and Dissertations

Accurate and early diagnosis of infectious diseases extremely important. Rapid diagnosis allows for effective treatment and increases the chance for recovery without complications. Additionally, the ability to test the populace frequently, swiftly, and affordably significantly aids in containing wide-scale outbreaks. In terms of specificity and sensitivity, nucleic acid amplification tests (NAAT) are one of the best options for diagnosing infectious diseases. Isothermal NAATS present a unique opportunity to create diagnostic tests deployed at a Point-of-Care (POC) level. Specifically, loop-mediated isothermal amplification (LAMP) and recombinase polymerase amplification (RPA) have the potential to deliver reliable POC diagnostics in low-resource settings. When designing …

Investigation Of Iron-Nickel Based Nanoparticles As Catalysts For Oxygen Evolution Reaction (Oer), Prashant Acharya

Graduate Theses and Dissertations

Hydrogen fuel is increasingly seen as an appealing alternative by both the scientific and the industrial communities in the drive towards a clean energy future. Hydrogen, unlike fossil-based fuels, does not release carbon dioxide, a chief component of greenhouse gases, upon combustion. However, more than 95% of the hydrogen in the world is still produced by burning fossil fuels as this method is currently the only economically feasible option at a large industrial scale.

Water electrolysis shows a lot of potential in both hydrogen generation and in the storage of energy from renewable sources such as wind and sunlight. Likewise, …

Electrochemical Deposition In Energy Storage Devices, Witness Atutala Martin

Graduate Theses and Dissertations

Metals, whether in a solid or soluble ion form, are a vital part of any electrochemical storage system. More so, Li metal is widely considered as the ideal anode because of its low density and low electrochemical potential (-3.04 V vs. the standard hydrogen electrode – SHE). However, just like most metals, it does not plate or strip evenly during cycling which can lead to cycling performance issues, short cycling lifespans, and even safety concerns brought about by dendrites that can cause internal short-circuiting within cells. This research focused on investigating the electroplating of metals in both aqueous and non-aqueous …

An Investigation Of Strong Electrostatic Adsorption Using Formed Commercial Supports, Connor Brendan Mcdonough

Theses and Dissertations

Strong electrostatic adsorption (SEA) is a well-tested procedure for the synthesis of supported monometallic and bimetallic nanoparticles with ultrasmall size (< 2 nm). Where, previous studies have laid the foundation for SEA using a variety of powdered supports, catalysts in this form are not suited for large volume chemical applications where pressure drop is critical to the process economics. Although there is no fundamental difference between the surface functional groups on powdered and extruded supports, the present study examined electrostatic adsorption as it relates to proton diffusion, precursor diffusion, and capillary imbibition.

Three formed alumina spheres and one carbon extrudate were selected for study. The alumina spheres, provided by BASF, were developmental materials with varying pore size distributions between 12 and 24800 angstroms. The carbon, provided by ADM and manufactured by CABOT, was strictly microporous in structure and was included to investigate the differences in mass transport as a function of support material.

Results indicated, a significant limitation in the approach to pH equilibrium comparing formed alumina spheres with the same …

Mechanisms Of Spontaneous Curvature Inversion In Compressed Graphene Ripples For Energy Harvesting Applications Via Molecular Dynamics Simulations, James M. Mangum, Ferdinand Harerimana, Millicent N. Gikunda, Paul M. Thibado

Physics Faculty Publications and Presentations

Electrically conductive, highly flexible graphene membranes hold great promise for harvesting energy from ambient vibrations. For this study, we built numerous three-dimensional graphene ripples, with each featuring a different amount of compression, and performed molecular dynamics simulations at elevated temperatures. These ripples have a convex cosine shape, then spontaneously invert their curvature to concave. The average time between inversion events increases with compression. We use this to determine how the energy barrier height depends on strain. A typical convex-to-concave curvature inversion process begins when the ripple’s maximum shifts sideways from the normal central position toward the fixed outer edge. The …

Facile Fabrication And Characterization Of Kraft Lignin@Fe3o4 Nanocomposites Using Ph Driven Precipitation: Effects On Increasing Lignin Content, Frankie A. Petrie, Justin M. Gorham, Robert T. Busch, Serhiy O. Leontsev, Esteban E. Ureña-Benavides, Erick S. Vasquez

Chemical and Materials Engineering Faculty Publications

This work offers a facile fabrication method for lignin nanocomposites through the assembly of kraft lignin onto magnetic nanoparticles (Fe3O4) based on pH-driven precipitation, without needing organic solvents or lignin functionalization. Kraft lignin@Fe3O4 multicore nanocomposites fabrication proceeded using a simple, pH-driven precipitation technique. An alkaline solution for kraft lignin (pH 12) was rapidly injected into an aqueous-based Fe3O4 nanoparticle colloidal suspension (pH 7) under constant mixing conditions, allowing the fabrication of lignin magnetic nanocomposites. The effects of increasing lignin to initial Fe3O4 mass content (g/g), increasing in ratio from 1:1 to 20:1, are discussed with a complete chemical, structural, and …

Flavour Chemicals, Synthetic Coolants And Pulegone In Popular Mint-Flavoured And Menthol-Flavoured E-Cigarettes., Esther E. Omaiye, Wentai Luo, Kevin J. Mcwhirter, James F. Pankow, Prue Talbot

Civil and Environmental Engineering Faculty Publications and Presentations

The Food and Drug Administration (FDA) has recently banned flavours from pod-style electronic cigarettes (e-cigarettes), except for menthol and tobacco. JUUL customers have quickly discovered that flavoured disposable e-cigarettes from other manufacturers, such as Puff, are readily available. Our goal was to compare flavour chemicals, synthetic coolants and pulegone in mint-flavoured/menthol-flavoured e-cigarettes from JUUL and Puff, evaluate the cytotoxicity of the coolants and perform a cancer risk assessment for pulegone, which is present in both JUUL pods and disposable Puff products.