Bioresource and Agricultural Engineering Commons^™

Development Of A User-Friendly Shelf-Life Model To Evaluate The Suitability Of Sustainable Materials In Roasted And Ground Coffee Fractional Packs, Matthew Baxley

All Theses

Roasted and ground coffee is a shelf stable product yet quite sensitive to oxidative staling. A consumer acceptance-based shelf-life modeling system was proposed with intent for the rapid determination of suitable coffee packages. This model requires as input the oxygen consumption rate (OCR) of the coffee, barrier values of packages, and the size of the packaging. Within the time period tested, it was shown that this model accurately predicted the oxygen uptake of coffee over time. Four bio-based packaging systems with barrier layers including mPLA, mPE, mcellophane, and paper were compared against a control (mPET). These materials displayed a range …

Nutritional-Environmental Trade-Offs In Potato Storage And Processing For A Sustainable Healthy Diet, Aubin Payne, Ebenezer M. Kwofie, Prince Agyemang, Jamie Baum

Biological and Agricultural Engineering Faculty Publications and Presentations

Over the last decade, poor diets and limited access to nutritious foods have been critical drivers of micronutrient deficiency in human health. However, food fortification at an industrialized scale in developed countries has helped eliminate deficiency-related diseases. In developing countries, fortified foods and biofortified materials have been delivered to nutrient-deficient communities. While these strategies have produced significant and acclaimed results, reports from the Food and Agricultural Organization suggest that over a quarter of the world’s population suffers from micronutrient deficiency. This implies that there are still declines in micronutrients in food products at different nodes along the food value chain …

Optimal And Robust Control Problems Of Microalgae Cultivation, Mariana Rodriguez-Jara, Luis A. Ricardez-Sandoval, Carlos E. Ramirez-Castelan, Hector Puebla

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Modeling Overdraft-Driven Nitrate Transport In Shallow Wells For Mitigation And Scenario Planning, Jonathan Cronk

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

In Nebraska, average nitrate concentrations in groundwater have doubled since 1974, making water quality management more important than ever. As droughts, heat waves, and floods become more common climate events, understanding their impacts will be necessary to make informed management decisions. Emerging literature describes that drought correlates to an increase in the concentration of nitrate-N at domestic and irrigation wells, however the relative contributions of the mechanisms thought to be responsible is currently unknown.

This research assessed the impact of recharge and pumping rate changes as two mechanisms affecting nitrate-N concentration during drought, assessed the relationship between well depth and …

An Amplification-Free Crispr-Sers Biosensor For Specific, Sensitive And Rapid Detection Of Salmonella Typhimurium In Poultry, Fei Jia, Bingyan Li, Yawen He, Yafang Shen, Juhong Chen, Xingmin Li, Yanbin Li

Biological and Agricultural Engineering Faculty Publications and Presentations

CRISPR (Clustered regularly interspaced short palindromic repeats) has been a cutting-edge biotechnology in both gene editing and biosensing due to its desirable features, such as high base resolution and set-and-forget operation. However, as a nucleic acid detection method, an DNA/RNA amplification procedure is still inevitable in CRISPR biosensors. In this study, a highly-ordered nanopore array SERS substrate, coated with silver nanoparticles, was fabricated and utilized as a platform for the specific detection of Salmonella Typhimurium (S. Typhimurium) without the time-consuming DNA amplification step. The smart sensing strategy was established by introducing an ssDNA labeled with a Raman active molecule …

A Text Analytics Model For Agricultural Knowledge Discovery And Sustainable Food Production: A Case Study From Oklahoma Panhandle, Ali Bagheri, Saleh Taghvaeian, Dursun Delen

Department of Agricultural and Biological Systems Engineering: Faculty Publications

With recent increases in the use of social media in agricultural communities, many farmers are showing more and more interest in participating in social media and sharing different aspects of their profession with peers and policymakers. However, researchers have not explored this valuable data source well enough to help improve agribusiness decision-making. This study aims to investigate the potential capability and richness of social media for agricultural knowledge discovery, which can help monitor, detect, and predict critical agricultural events and activities and develop more sustainable food production and agricultural economy. This research utilizes text-mining tools and techniques to collect, process, …

Statistical And Machine Learning Approaches To Describe Factors Affecting Preweaning Mortality Of Piglets, Md Towfiqur Rahman, Tami M. Brown-Brandl, Gary A. Rohrer, Sudhendu R. Sharma, Vamsi Manthena, Yeyin Shi

Department of Agricultural and Biological Systems Engineering: Faculty Publications

High preweaning mortality (PWM) rates for piglets are a significant concern for the worldwide pork industries, causing economic loss and well-being issues. This study focused on identifying the factors affecting PWM, overlays, and predicting PWM using historical production data with statistical and machine learning models. Data were collected from 1,982 litters from the United States Meat Animal Research Center, Nebraska, over the years 2016 to 2021. Sows were housed in a farrowing building with three rooms, each with 20 farrowing crates, and taken care of by well-trained animal caretakers. A generalized linear model was used to analyze the various sow, …

Statistical And Machine Learning Approaches To Describe Factors Affecting Preweaning Mortality Of Piglets, Md Towfiqur Rahman, Tami M. Brown-Bandl, Gary A. Rohrer, Sudhendu R. Sharma, Vamsi Manthena, Yeyin Shi

Department of Agricultural and Biological Systems Engineering: Faculty Publications

High preweaning mortality (PWM) rates for piglets are a significant concern for the worldwide pork industries, causing economic loss and well-being issues. This study focused on identifying the factors affecting PWM, overlays, and predicting PWM using historical production data with statistical and machine learning models. Data were collected from 1,982 litters from the U.S. Meat Animal Research Center, Nebraska, over the years 2016 to 2021. Sows were housed in a farrowing building with three rooms, each with 20 farrowing crates, and taken care of by well-trained animal caretakers. A generalized linear model was used to analyze the various sow, litter, …

Statistical And Machine Learning Approaches To Describe Factors Affecting Preweaning Mortality Of Piglets, Md Towfiqur Rahman, Tami M. Brown-Bandl, Gary A. Rohrer, Sudhendu R. Sharma, Vamsi Manthena, Yeyin Shi

Department of Agricultural and Biological Systems Engineering: Faculty Publications

High preweaning mortality (PWM) rates for piglets are a significant concern for the worldwide pork industries, causing economic loss and well-being issues. This study focused on identifying the factors affecting PWM, overlays, and predicting PWM using historical production data with statistical and machine learning models. Data were collected from 1,982 litters from the U.S. Meat Animal Research Center, Nebraska, over the years 2016 to 2021. Sows were housed in a farrowing building with three rooms, each with 20 farrowing crates, and taken care of by well-trained animal caretakers. A generalized linear model was used to analyze the various sow, litter, …

A Review Of Three-Dimensional Vision Techniques In Food And Agriculture Applications, Lirong Xiang, Dongyi Wang

Biological and Agricultural Engineering Faculty Publications and Presentations

In recent years, three-dimensional (3D) machine vision techniques have been widely employed in agriculture and food systems, leveraging advanced deep learning technologies. However, with the rapid development of three-dimensional (3D) imaging techniques, the lack of a systematic review has hindered our ability to identify the most suitable imaging systems for specific agricultural and food applications. In this review, a variety of 3D imaging techniques are introduced, with their working principles and applications in agriculture and food systems. These techniques include Structure lighting-based 3D imaging, Multiview 3D imaging system, Time of Flight (ToF)-based 3D imaging system, Lighting Detection and Ranging (LiDAR), …

Upscaling Wetland Methane Emissions From The Fluxnet-Ch4 Eddy Covariance Network (Upch4 V1.0): Model Development, Network Assessment, And Budget Comparison, Gavin Mcnicol, Etienne Fluet-Chouinard, Zutao Ouyang, Sara Knox, Zhen Zhang, Tuula Aalto, Sheel Bansal, Kuang Yu Chang, Min Chen, Kyle Delwiche, Sarah Feron, Mathias Goeckede, Jinxun Liu, Avni Malhotra, Joe R. Melton, William Riley, Rodrigo Vargas, Kunxiaojia Yuan, Qing Ying, Qing Zhu, Pavel Alekseychik, Mika Aurela, David Billesbach, David I. Campbell, Jiquan Chen, Housen Chu, Ankur R. Desai, Eugenie Euskirchen, Jordan Goodrich, Timothy Griffis, Manuel Helbig, Takashi Hirano, Hiroki Iwata, Gerald Jurasinski, John King, Franziska Koebsch, Randall Kolka, Ken Krauss, Annalea Lohila, Ivan Mammarella

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Wetlands are responsible for 20%–31% of global methane (CH4) emissions and account for a large source of uncertainty in the global CH4 budget. Data-driven upscaling of CH4 fluxes from eddy covariance measurements can provide new and independent bottom-up estimates of wetland CH4 emissions. Here, we develop a six-predictor random forest upscaling model (UpCH4), trained on 119 site-years of eddy covariance CH4 flux data from 43 freshwater wetland sites in the FLUXNET-CH4 Community Product. Network patterns in site-level annual means and mean seasonal cycles of CH4 fluxes were reproduced accurately in tundra, boreal, and temperate regions (Nash-Sutcliffe Efficiency ∼0.52–0.63 and 0.53). …

Creating An Automatic Lowering Function For Quarter-Scale Tractor Pulling Sled, Sam Wilkins

Honors Program: Senior Projects (Public)

As the agricultural industry works to continuously integrate innovative technology and improve production efficiency, improved on-board data acquisition and transmission will be necessary for all agricultural machines. To make this a reality, the utilization of controller area network (CAN) technology will be crucial. Therefore, it is important for all agricultural engineers to have foundational knowledge of CAN bus systems and the standards that govern their use in industry. The UNL quarter-scale tractor team regularly utilizes CAN buses on their tractors and testing equipment. One such testing machine is the team’s pulling sled, which uses CAN messages to transport important information …

Resilin Distribution And Abundance In Apis Mellifera Across Biological Age Classes And Castes, Audrey Anderson, Noah Keime, Chandler Fong, Andrew Kraemer, Carol Fassbinder-Orth

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The presence of resilin, an elastomeric protein, in insect vein joints provides the flexible, passive deformations that are crucial to flapping flight. This study investigated the resilin gene expression and autofluorescence dynamics among Apis mellifera (honey bee) worker age classes and drone honey bees. Resilin gene expression was determined via ddPCR on whole honey bees and resilin autofluorescence was measured in the 1m-cu, 2m-cu, Cu-V, and Cu2-V joints on the forewing and the Cu-V joint of the hindwing. Resilin gene expression varied significantly with age, with resilin activity being highest in the pupae. Autofluorescence of the 1m-cu and the Cu-V …

Hydrothermal Carbonization Of Biomass Wastes: Sustainability And Geochemistry, Michael A. Kruge, Teresa A. Centeno, Alvaro Amado-Fierro, José Manuel González-Lafuente, Ruben Forjan-Castro, José Luis Gallego

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

Introduction. To reduce the stream of solid waste going to landfills, innovative means for beneficial use are essential. The diversity and volume of organic wastes pose singular problems and opportunities for recovery and circularity. Common processes for organics include conversion to biofuels and carbonization to biochar, typically done by torrefaction (dry pyrolysis). Research on biochar explores its potential as pollutant adsorbent, agricultural or polluted soil amendment, biofuel (directly or as feedstock), and for carbon sequestration (Ighalo et al., 2022; Cavali et al., 2023). Recently, other processes at lower temperatures such as hydrothermal carbonization (HTC) offer new possibilities (Seshadri et al., …

Degredation Of Organic Pollutants In Flocculated Liquid Digestate Using Photocatalytic Titanate Nanofibers: Mechanism And Response Surface Optimization, Yiting Xiao, Yang Tian, Yuanhang Zhan, Jun Zhu

Biological and Agricultural Engineering Faculty Publications and Presentations

Titanate nanofibers (TNFs) were synthesized using a hydrothermal method and were employed for the first time in this study to photocatalytically degrade organic pollutants found in flocculated liquid digestate of poultry litter. The photocatalytic performance of TNFs, with a bandgap of 3.16 eV, was tested based on degradation of organic pollutants and removal of color. Five combinations of pollutant concentration and pH were examined (0.2 to 1.3 g·L⁻¹ at pH 4 to 10). Central composite design (CCD) and response surface methodology (RSM) were applied in order to optimize the removal rates of volatile fatty acids (VFA) and chemical oxygen …

Alkaline Pretreatment And Air Mixing For Improvement Of Methane Production From Anaerobic Co-Digestion Of Poultry Litter With Wheat Straw, Yuanhang Zhan, Jun Zhu, Yiting Xiao, Leland C. Schrader

Biological and Agricultural Engineering Faculty Publications and Presentations

Alkaline pretreatment (AL) and air mixing (air) both have the potential to improve anaerobic co-digestion (Co-AD) of poultry litter with wheat straw for methane production. In this study, the effects of the combination of AL (pH 12 for 12 h) and air mixing (12 mL·d⁻¹) on the Co-AD process were investigated. The substrate hydrolysis was enhanced by AL, with soluble chemical oxygen demand increased by 4.59 times and volatile fatty acids increased by 5.04 times. The cumulative methane yield in the group of Co-AD by AL integrated with air (Co-(AL + air)), being 287 mL·(g VS_added) …

Modeling The Moisture Content And Drying Rate Of Zucchini (Cucurbita Pepo L.) In A Solar Hybrid Dryer Using Ann And Anfis Methods, Halil Nusret Bulus, Aytac Moralar, Soner Celen

The Philippine Agricultural Scientist

Estimating product drying kinetics is critical to obtain the best drying process without compromising product quality and necessitates the development of numerical drying models. This research aims to compare the prediction models developed using artificial neural network (ANN) and adaptive network-based fuzzy inference system (ANFIS), two popular machine learning approaches in the recent years. Zucchini slices were chosen as samples and dried in a solar-assisted microwave belt dryer at 0.245 m/min belt speed and microwave powers of 0.7, 1, and 1.4 kW. On the data set obtained by computing the moisture content and drying rate values, prediction models were developed …

Plant Height Estimation Using Rtk-Gnss Enabled Unmanned Aerial Vehicle (Uav) Photogrammetry, Pascal Izere

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Using Unmanned Aerial Vehicle (UAV) based remote sensing technology to provide high-throughput plant phenotypic traits has shown a great potential of eliminating manual measurements. For example, the use of UAV imaging to estimate plant height is of great interest to plant breeders and agronomists. Height is linked to a plant’s physical growth, light competition, health, biomass, and yield; thus, its accurate estimation is crucial in breeding. Conventionally, accurate height estimation by UAV platforms relies heavily on the use of ground control points (GCPs) for geometric calibration due to the relatively low positioning accuracy of regular differential global navigation satellite system …

Influence Of Ultrasound Machine Settings On Quantitative Measures Derived From Spatial Frequency Analysis Of Muscle Tissue, Scott K. Crawford, Stephanie A. Kliethermes, Bryan C. Heiderscheit, Greg Bashford

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Background Ultrasound is a powerful tool for diagnostic purposes and provides insight into both normal and pathologic tissue structure. Spatial frequency analysis (SFA) methods characterize musculoskeletal tissue organization from ultrasound images. Both sonographers in clinical imaging and researchers may alter a minimized range of ultrasound settings to optimize image quality, and it is important to know how these small adjustments of these settings affect SFA parameters. The purpose of this study was to investigate the effects of making small adjustments in a typical default ultrasound machine setting on extracted spatial frequency parameters (peak spatial frequency radius (PSFR), Mmax, Mmax%, and …

Non-Destructive Evaluation Of White Striping And Microbial Spoilage Of Broiler Breast Meat Using Structured-Illumination Reflectance Imaging, Ebenezer O. Olaniyi

Theses and Dissertations

Manual inspection is a prevailing practice for quality assessment of poultry meat, but it is labor-intensive, tedious, and subjective. This thesis aims to assess the efficacy of an emerging structured illumination reflectance imaging (SIRI) technique with machine learning approaches for assessing WS and microbial spoilage in broiler breast meat. Broiler breast meat samples were imaged by an in house-assembled SIRI platform under sinusoidal illumination. In first experiment, handcrafted texture features were extracted from direct component (DC, corresponding to conventional uniform illumination) and amplitude component (AC, unique to the use of sinusoidal illumination) images retrieved from raw SIRI pattern images build …