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Articles 1291 - 1320 of 9777

Full-Text Articles in Veterinary Medicine

Metabolomic Profiles Of Mammary Gland Secretion In Relation To Dam’S Weight, Litter Size, Parity Number, And Kid’S Growth In Black Bengal Goat, Tien Vo Thi Phuong Jan 2022

Metabolomic Profiles Of Mammary Gland Secretion In Relation To Dam’S Weight, Litter Size, Parity Number, And Kid’S Growth In Black Bengal Goat, Tien Vo Thi Phuong

Chulalongkorn University Theses and Dissertations (Chula ETD)

Black Bengal goat, a small size meat-type goat which is known to have high litter size and low milk yield. Kids born from high litter size dams are at high risk of mortality. Colostrum contains high quantities of nutrients, growth factors, and passive antibodies, and is essential for kid survival and development. However, metabolomic profiles of mammary secretion in goats are still limited. The aims of this study were to investigate metabolomic profiles of mammary secretion of purebred Black Bengal goats and their relationships regarding to litter size, parity, dam health, and kid growth. Forty-three colostrum samples (D0) were collected …


Effects Of Fingerroot (Boesenbergia Rotunda) Powder On Egg Performance, And Quality, Egg Yolk Malondialdehyde In Laying Hens, Miftah Nurfarid Jan 2022

Effects Of Fingerroot (Boesenbergia Rotunda) Powder On Egg Performance, And Quality, Egg Yolk Malondialdehyde In Laying Hens, Miftah Nurfarid

Chulalongkorn University Theses and Dissertations (Chula ETD)

This study aimed to determine the effect of fingerroot powder supplementation on the performance of laying hens, egg quality, and malondialdehyde in the egg yolk. A total of 192 Hy-Line brown laying hens aged 43 weeks were divided into four treatment groups with 48 hens in each group (8 replicates; 6 birds each). The treatments were the control (basal diet), basal diet supplemented with vitamin E at 250 mg/kg, basal diet plus 20 g fingerroot powder/kg, and basal diet plus 40 g fingerroot powder/kg. Performance parameters were analyzed in the following two experimental period: 1 to 3 week and 4 …


The Acute Physiological Response Of Polar Bears To Helicopter Capture, John P. Whiteman, Henry J. Harlow, George M. Durner, Eric V. Regehr, Steven C. Amstrup, Anthony M. Pagano, Merav Ben-David Jan 2022

The Acute Physiological Response Of Polar Bears To Helicopter Capture, John P. Whiteman, Henry J. Harlow, George M. Durner, Eric V. Regehr, Steven C. Amstrup, Anthony M. Pagano, Merav Ben-David

Biological Sciences Faculty Publications

Many wildlife species are live captured, sampled, and released; for polar bears (Ursus maritimus) capture often requires chemical immobilization via helicopter darting. Polar bears reduce their activity for approximately 4 days after capture, likely reflecting stress recovery. To better understand this stress, we quantified polar bear activity (via collar‐mounted accelerometers) and body temperature (via loggers in the body core [Tabd] and periphery [Tper]) during 2–6 months of natural behavior, and during helicopter recapture and immobilization. Recapture induced bouts of peak activity higher than those that occurred during natural behavior for 2 of 5 bears, …


Identifying Bisphosphonate Protein Biomarkers In Equine Sera Using Mass Spectrometry Methods, Malinda Jayne Alison Porter Jan 2022

Identifying Bisphosphonate Protein Biomarkers In Equine Sera Using Mass Spectrometry Methods, Malinda Jayne Alison Porter

Theses and Dissertations--Veterinary Science

Bone resorptive diseases affect humans and horses, alike. Examples of these diseases include osteoporosis, Paget’s disease, and osteogenesis imperfecta in humans, and navicular disease in the horse (Mitchell et al., 2019; Suva et al., 2021). Bisphosphonates are used to treat these diseases, and may remain in the bone for several years after administration, demonstrating the need for newer drug testing methods.

The purpose of the discovery phase of this study was to use blood samples of in-training horses which had been given an initial administration of the bisphosphonate tiludronate and identify protein biomarkers that changed in response to this class …


The Effect Of Intra-Articular Corticosteroids On The Systemic Messenger Rna Response In An Equine Experimental Inflammation Model, Emma Elaine Partridge Jan 2022

The Effect Of Intra-Articular Corticosteroids On The Systemic Messenger Rna Response In An Equine Experimental Inflammation Model, Emma Elaine Partridge

Theses and Dissertations--Veterinary Science

Intra-articular (IA) corticosteroids are regularly used in equine athletes for the control of joint inflammation. The goal of this study was to utilize an acute synovitis inflammation model to determine the residual effects of IA betamethasone and triamcinolone acetonide on various inflammatory parameters and lameness.

Five mixed-breed, 2-year-old horses were randomly allocated to an IA treatment of the radiocarpal joint with 9 mg of either betamethasone or triamcinolone acetonide. Two weeks following treatment, horses were injected with 1μg of lipopolysaccharide (LPS) diluted in 1 mL of 0.9% sterile saline. Following LPS injection, horses were crossed-over and both sets of injections …


The Effects Of Cannabidiol On Senior Equine Health, Shelley Turner Jan 2022

The Effects Of Cannabidiol On Senior Equine Health, Shelley Turner

Theses and Dissertations--Veterinary Science

Cannabis sativa L., has been revealed to produce hundreds of phytocannabinoids, of which cannabidiol (CBD) is one of the most desired. It has been revealed that CBD can potentially treat inflammation and act as an analgesic in humans without psychoactive effects of delta-9-tetrahydrocannabinol (THC). Recently, there has been interest in understanding the potential health benefits of CBD for horses. With an increasing senior horse population (< 15 years old), alternatives to the use of non-steroidal anti-inflammatory drugs (NSAIDs) such as phenylbutazone, firocoxib, and flunixin meglumine, are desired as these common anti-inflammatory treatments have negative side effects. Because senior horses may have chronic low-grade inflammation, termed inflamm-aging, they are a natural model to investigate the efficacy of CBD on inflammatory responses as well as other health parameters. Given this interest, and due to the lack of research conducted on CBD in the horse, the overall objective of this dissertation work was to conduct both basic and applied research investigating the effects of CBD on equine immune function and health. The first objective was to determine the in vitro effects of CBD as an anti-inflammatory. Peripheral blood mononuclear cells (PBMCs) from senior horses were cultured in vitro with increasing concentrations of pure CBD dissolved in dimethyl sulfoxide (DMSO). These cells were …


Growing South Dakota (Fall 2021 / Winter 2022), College Of Agriculture, Food And Environmental Sciences Jan 2022

Growing South Dakota (Fall 2021 / Winter 2022), College Of Agriculture, Food And Environmental Sciences

Growing South Dakota (Publication of the College of Agriculture, Food and Environmental Sciences)

[Page] 3 SDSU Launches New Professional Program in Veterinary Medicine
[Page] 7 The 6th Generation
[Page] 9 First-Gen Proud
[Page] 11 Student Success
[Page] 21 Alumni News
[Page] 27 CAFES News and Updates
[Page] 45 Jackrabbits Now and Then: A Current Student and Alumni Q&A


Quality Parameters Of Wet And Dry Aged Beef Loins From Cattle Fed High Doses Of Vitamin E, David M. Velazco, Joe A. Sonderman, Nicolas J. Herrera, Chris Calkins Jan 2022

Quality Parameters Of Wet And Dry Aged Beef Loins From Cattle Fed High Doses Of Vitamin E, David M. Velazco, Joe A. Sonderman, Nicolas J. Herrera, Chris Calkins

Nebraska Beef Cattle Reports

The objective of this experiment was to determine if dietary supplementation of high doses of vitamin E (alpha-tocopherol; 2,200 IU per day for 100 days) can impact quality attributes of wet and dry-aged beef strip loins. Steaks from beef cattle supplemented with high doses of vitamin E exhibited less lipid oxidation after wet or dry aging, took longer time to discolor during retail display, and sustained redder color for a longer period under retail display conditions compared to controls. Free amino acids related to positive beef flavor attributes were higher for dry-aged loins compared to traditional wet aged samples loins. …


Beef Quality And Oxidative Stability From Cattle Fed High Levels Of Vitamin E, Nicolas J. Herrera, Joe A. Sonderman, David M. Velazco, Chris Calkins Jan 2022

Beef Quality And Oxidative Stability From Cattle Fed High Levels Of Vitamin E, Nicolas J. Herrera, Joe A. Sonderman, David M. Velazco, Chris Calkins

Nebraska Beef Cattle Reports

Meat color is a major factor for consumer meat purchasing decisions. Aging beef, which can improve tenderness, has been shown to accelerate discoloration in fresh beef, shortening retail display time, and generating negative flavor attributes. The objective of this study was to evaluate supplementing cattle high levels (2,200 International Units/ day) of Vitamin E to sustain meat quality during prolonged retail display in beef strip loins after 2 or 14 days aging compared to commercially-produced loins selected as controls. Results showed a treatment x age effect for Warner-Bratzler shear force and free calcium content, primarily due to aging. A dietary …


Effect Of Feeding Cars On Digestibility And Fatty Acid Flow In Finishing Cattle Diets, John C. Gibbons, Mitchell M. Norman, Tyler J. Spore, Hannah C. Wilson, Kylie Butterfield, Andea K. Watson, Galen E. Erickson, Jonathan W. Wilson Jan 2022

Effect Of Feeding Cars On Digestibility And Fatty Acid Flow In Finishing Cattle Diets, John C. Gibbons, Mitchell M. Norman, Tyler J. Spore, Hannah C. Wilson, Kylie Butterfield, Andea K. Watson, Galen E. Erickson, Jonathan W. Wilson

Nebraska Beef Cattle Reports

An experiment was conducted to evaluate the impact of a liquid feed, Condensed Algal Residue Solubles (CARS) on diet digestibility and fatty acid flow to the small intestine. Three treatments included CARS at 0, 2.5, and 5% of the diet dry matter, replacing steam-flaked corn. The base diet included 73, 70.5, or 68% steam flaked corn, 15% dried distillers grains plus solubles, 8% alfalfa haylage, and 4% supplement. Inclusion of CARS in the diet did not affect dry matter or organic matter intake or digestibility of dry matter, organic matter or neutral detergent fiber. Amount of fatty acid flowing to …


Evaluation Of Green Grass On Nutrient Digestibility And Fatty Acid Flow In Cattle Finishing Diets, Aksel R. Wiseman, Tyler J. Spore, Mitchell M. Norman, Hannah C. Wilson, J. C. Macdonald, Andrea K. Watson, Galen E. Erickson Jan 2022

Evaluation Of Green Grass On Nutrient Digestibility And Fatty Acid Flow In Cattle Finishing Diets, Aksel R. Wiseman, Tyler J. Spore, Mitchell M. Norman, Hannah C. Wilson, J. C. Macdonald, Andrea K. Watson, Galen E. Erickson

Nebraska Beef Cattle Reports

Six ruminally and duodenally cannulated steers were utilized in a 3 × 3 replicated Latin square experiment to test 0, 15, and 30% dietary inclusion of Green Grass (Sunseo Omega 3; Chungcheong Duk-Do, South Korea), a feed comprised of sesame meal, giant kelp, cassava, and sorghum (not currently approved to be fed in the US). Dry matter and fiber intake increased linearly with increased Green Grass inclusion. Dry matter and organic matter digestibility were not affected by Green Grass inclusion. Concentration of saturated fatty acids at the duodenum were similar for Green Grass 0 and Green Grass 15 with a …


Effect Of Biochar As A Feedlot Pen Surface Amendment On Manure Nutrient Capture, J. L. Sperber, Braden C. Troyer, Mitchell M. Norman, Levi J. Mcphillips, Heather Nobert, Andrea K. Watson, Galen E. Erickson Jan 2022

Effect Of Biochar As A Feedlot Pen Surface Amendment On Manure Nutrient Capture, J. L. Sperber, Braden C. Troyer, Mitchell M. Norman, Levi J. Mcphillips, Heather Nobert, Andrea K. Watson, Galen E. Erickson

Nebraska Beef Cattle Reports

Two mass balance experiments were conducted during winter and summer seasons to evaluate the effect of spreading biochar on the feedlot pen surface on manure nutrient retention. The winter experiment (Dec to June) evaluated three treatments including biochar spread to pen surface (approximately 54 lb of biochar per steer), hydrated lime spread to pen surface (cooperation with UNL Environmental Engineering; approximately 68 lb per steer) and negative control (no treatment applied). The summer experiment (June to Nov) evaluated biochar treatment (approximately 68 lb of biochar per steer) against negative control. Biochar utilized in winter and summer was unprocessed and sourced …


Interaction Of Sweet Bran Inclusion And Corn Processing Method In Beef Finishing Diets, Rebecca L. Sjostrand, Levi J. Mcphillips, Braden C. Troyer, Maggie Youngers, Rick Stock, J. C. Macdonald, Galen E. Erickson Jan 2022

Interaction Of Sweet Bran Inclusion And Corn Processing Method In Beef Finishing Diets, Rebecca L. Sjostrand, Levi J. Mcphillips, Braden C. Troyer, Maggie Youngers, Rick Stock, J. C. Macdonald, Galen E. Erickson

Nebraska Beef Cattle Reports

The effects of corn processing method and Sweet Bran concentration on finishing cattle performance and carcass characteristics were evaluated in steam-flaked corn or a blend of high-moisture and dry-rolled corn-based diets. Sweet Bran was included at 0, 20, or 40% of diet dry matter. When cattle were fed 0% Sweet Bran, feeding steam-flaked corn resulted in a 11.7% improvement in feed conversion and heavier hot-carcass weight compared to feeding high-moisture/ dry-rolled corn. As Sweet Bran increased in the diet, there was a linear improvement in feed conversion for high-moisture/dry-rolled corn-fed steers and no change in feed conversion for steam-flaked corn-fed …


Effect Of Rapeseed Inclusion In Late-Summer Planted Oat Pasture On Growing Performance Of Beef Steers, Devin A. Jakub, Hannah E. Riley, Kristin E. Hales, Steven D. Shackelford, Harvey C. Freetly, M. E. Drewnoski Jan 2022

Effect Of Rapeseed Inclusion In Late-Summer Planted Oat Pasture On Growing Performance Of Beef Steers, Devin A. Jakub, Hannah E. Riley, Kristin E. Hales, Steven D. Shackelford, Harvey C. Freetly, M. E. Drewnoski

Nebraska Beef Cattle Reports

An oat monoculture was planted in late summer at 100 lb/ac and compared to oats planted at 50 lb/ac with rapeseed included at 3 lb/ac. Seed cost of the oat monoculture ($20/ac) was greater than the mix ($15/ac). Initial forage yield was not affected by the inclusion of rapeseed with fall oat. Calf gain was significantly greater and cost of gain was significantly decreased when rapeseed was included due to the combination of greater gains and lesser seed cost. Including rapeseed in late summer planted oats may be beneficial for producers who want to graze growing calves in the fall.


Interaction Of Urea With Frequency And Amount Of Distillers Grains Supplementation On Growing Steer Rumen Digestion Parameters, Haley F. Linder, Joshua E. Sebade, Tyler J. Spore, M. E. Drewnoski, J. C. Macdonald Jan 2022

Interaction Of Urea With Frequency And Amount Of Distillers Grains Supplementation On Growing Steer Rumen Digestion Parameters, Haley F. Linder, Joshua E. Sebade, Tyler J. Spore, M. E. Drewnoski, J. C. Macdonald

Nebraska Beef Cattle Reports

Ruminally cannulated steers were used in 8 × 6 row-column design with 8 animals and 6 periods. Treatment design was a 2 × 2 × 2 factorial, with factors including amount of supplementation, frequency of supplementation, and inclusion of urea. Hay dry matter intake was reduced by increased amount of supplementation and by decreased frequency of supplementation. Total VFA concentration did not differ among treatments. Rumen ammonia-N concentration was impacted by an interaction of amount of supplementation and inclusion of urea but there was no effect of supplementation frequency. In situ NDF disappearance did not differ between daily and alternate …


Comparison Of Partially Confined And Traditional Cow-Calf Systems, Zac E. Carlson, Levi J. Mcphillips, Galen E. Erickson, M. E. Drewnoski, J. C. Macdonald Jan 2022

Comparison Of Partially Confined And Traditional Cow-Calf Systems, Zac E. Carlson, Levi J. Mcphillips, Galen E. Erickson, M. E. Drewnoski, J. C. Macdonald

Nebraska Beef Cattle Reports

Production of cow-calf pairs and grow/finish performance of calves from a partially-confined, fall-calving, intensive cow-calf system were compared to a traditional, spring-calving, extensive cow-calf system. Body condition was lower at breeding and weaning for the fall-calving alternative system compared to the traditional, spring-calving system. Conception, calving, and weaning rates were not different among treatments. Weaning weights were lower for the fall-calving alternative system than traditional, spring-calving system. Following weaning, calves were grown for 117 d and then subsequently finished to the same target fatness for both systems. In the grower phase, gain was greater and feed conversion improved for the …


Factors Influencing Intestinal Parasite In Black-And-White Ruffed Lemurs (Varecia Variegata), Eliette Noromalala Jan 2022

Factors Influencing Intestinal Parasite In Black-And-White Ruffed Lemurs (Varecia Variegata), Eliette Noromalala

All Master's Theses

Ecological factors, such as feeding behavior and climatic seasonality, might influence intestinal parasite infection and patterns in non-human primates. Here, we examined if frugivory levels and climate (i.e., temperature and rainfall) were associated with parasite patterns in black-and-white ruffed lemurs (Varecia variegata). Feeding data using 5-min focal sampling, climate data, and fecal samples from V. variegata (n = 23) at the “Mangevo” site were collected from February through May 2019. Microscopic examinations of fecal flotation and sedimentation were done to identify and count parasites. Nematoda (Callistoura vauceli, and Strongyloides sp.) Ciliophora (Balantidium sp.), Coccidia ( …


Effects Of Supplemented Intra- And Extra-Cellular Trehalose On Cryopreservation Of Feline Oocytes, Saengtawan Arayatham Jan 2022

Effects Of Supplemented Intra- And Extra-Cellular Trehalose On Cryopreservation Of Feline Oocytes, Saengtawan Arayatham

Chulalongkorn University Theses and Dissertations (Chula ETD)

Study 1 aimed at examining the effects of different stages of oocyte maturation and trehalose concentrations on freezing ability and developmental capability of feline oocytes. The immature and matured feline oocytes were cryopreserved and thawed. They were assessed for developmental competence. The effects of different concentrations of trehalose (0, 0.125, 0.25, 0.5, 1 M) on the freezing ability of feline oocytes were tested. The cryopreservation generally induced poor embryo development, while immature oocytes were more susceptible to cryodamage compared with the matured oocytes (P<0.05). Incubation of oocytes with high concentrations of trehalose (0.5, 1 M) significantly reduced the developmental competence. Optimal concentrations of trehalose during cryopreservation of immature and matured oocytes were different (0.125 M and 0.25 M, respectively). It is concluded that stages of meiotic maturation affected the freezing ability of feline oocytes. Optimal concentration of trehalose was differently required for immature and matured feline oocytes. Study 2 aimed at examining the effect of membrane-permeable trehalose on the freezing ability of feline oocytes matured in vitro. intracellular trehalose (trehalose hexaacetate; Tre-(OAc)6) was synthesized from trehalose precursor and subjected to spectroscopic characterization. The membrane permeability of the Tre-(OAc)6 was investigated by incubating oocytes with different concentrations of Tre-(OAc)6 (3, 15, and 30 mM) and optimum concentration and the toxicity of Tre-(OAc)6 were subsequently assessed. The effects of Tre-(OAc)6 on freezing ability in terms of apoptotic gene expression and developmental competence of in-vitro matured oocytes were examined, respectively. The Tre-(OAc)6 permeated into the ooplasm of cat oocytes in a dose- and time-dependent manner. The highest concentration of intracellular trehalose was detected when the oocytes were incubated for 24 h with 30 mM Tre-(OAc)6. For the toxicity test, incubation of oocytes with 3 mM Tre-(OAc)6 for 24 h did not affect maturation rate and embryo development. However, high doses of Tre-(OAc)6 (15 and 30 mM) significantly reduced maturation and fertilization rates (P < 0.05). In addition, frozen-thawed oocytes treated with 3 mM Tre-(OAc)6 significantly upregulated anti-apoptotic (BCL-2) gene expression compared with the control (0 mM) and other Tre-(OAc)6 concentrations (15 and 30 mM). Oocyte maturation in the presence of 3 mM Tre-(OAc)6 prior to cryopreservation significantly improved oocyte developmental competence in terms of cleavage and blastocyst rates when compared with the control group (P < 0.05). Our results lead us to infer that increasing the levels of intracellular trehalose by Tre-(OAc)6 during oocyte maturation improves the freezing ability of feline oocytes, albeit at specific concentrations. Study 3 aimed at examining the effects of combination of intra-cellular (Tre-(OAc)6) and extra-cellular (α,α-trehalose) trehalose on freezing ability of feline oocytes. Optimal concentrations of Tre-(OAc)6 (0, 1.5, and 3 mM) and trehalose (0, 0.125, 0.25, and 0.5 M) were investigated for cryopreservation of matured feline oocytes. The combination of the two optimal concentrations were subsequently examined. The results showed that 3 mM of Tre-(OAc)6 improved post-thawed developmental competence, while extra-cellular trehalose at 0.25 M significant enhanced freezing ability of feline oocytes (P<0.05). The combination of intra- and extra-cellular trehalose significantly improved developmental capability of frozen-thawed matured feline oocytes compared to non-trehalose control.


Metaproteomic Analysis Of Gut Resistome In The Cecal Microbiota Of Fattening Pigs Raised Without Antibiotics, Pamornya Buthasane Jan 2022

Metaproteomic Analysis Of Gut Resistome In The Cecal Microbiota Of Fattening Pigs Raised Without Antibiotics, Pamornya Buthasane

Chulalongkorn University Theses and Dissertations (Chula ETD)

Improper use of antibiotics in swine could reduce commensal bacteria and possibly increase pathogen infections via the gut resistome. This study aimed to compare the metaproteomic profiles of gut resistome and related metabolism in the cecal microbiota of fattening pigs raised under antibiotic-free (ABF) conditions with those of ordinary industrial pigs (controls, CTRL). The top three relative abundant microbials in both groups were Escherichia coli, Ruminococcus and Lactobacillus, followed by Bacteroides and Bifidobacterium. E. coli, Lactobacillus and Bacteroides were found to be increased in the CTRL group, whereas Ruminococcus and Clostridium were greater in the ABF group. The highest abundance …


Defining And Assessing Sentience, Barry O. Hughes Jan 2022

Defining And Assessing Sentience, Barry O. Hughes

Animal Sentience

Precisely what is meant by the term sentience and how does it overlap with being conscious? We accept that animals have feelings but how do we know what they are and can we measure them? It is important that we clarify the terminology underlying these difficult concepts. Over the last 50 years a scientific discipline has developed to tackle these questions in a systematic way. We have to avoid thoughtless anthropomorphism yet we have to try to relate sentience in animals, as appropriate, to corresponding experiences in humans.


Accuracy Of A Sacral Drilling With A Custom 3d Printed Drilling Guide Or Free-Hand Technique In Canine Experimental Sacroiliac Luxation, Daniel Mccarthy Jan 2022

Accuracy Of A Sacral Drilling With A Custom 3d Printed Drilling Guide Or Free-Hand Technique In Canine Experimental Sacroiliac Luxation, Daniel Mccarthy

LSU Master's Theses

ABSTRACT

The objective of this study was to improve the accuracy of drilling during the repair of sacroiliac luxation with a 3D-printed patient-specific drill guide (3D-GDT) compared to free-hand drilling technique (FHDT). A blinded, randomized, prospective study was performed including sixteen canine cadavers (20-25 kg) euthanized for reasons not related to the study. Dorsal, bilateral, sacroiliac luxations (SILs) were created experimentally. A pelvic CT was performed pre- and post-drilling. The FHDT was drilled followed by 3D-GDT for each sacrum. CT and 3D measurements of craniocaudal and dorsoventral angles were compared between FHDT and 3D-GDT, as well as deviations of entry …


Structural Variant-Based Pangenome Construction Has Low Sensitivity To Variability Of Haplotype-Resolved Bovine Assemblies, Alexander S. Leonard, Danang Crysnanto, Zih-Hua Fang, Michael P. Heaton, Brian L. Vander Ley, Carolina Herrera, Heinrich Bollwein, Derek M. Bickhart, Benjamin D. Rosen, Hubert Pausch Jan 2022

Structural Variant-Based Pangenome Construction Has Low Sensitivity To Variability Of Haplotype-Resolved Bovine Assemblies, Alexander S. Leonard, Danang Crysnanto, Zih-Hua Fang, Michael P. Heaton, Brian L. Vander Ley, Carolina Herrera, Heinrich Bollwein, Derek M. Bickhart, Benjamin D. Rosen, Hubert Pausch

School of Veterinary and Biomedical Sciences: Faculty Publications

Advantages of pangenomes over linear reference assemblies for genome research have recently been established. However, potential effects of sequence platform and assembly approach, or of combining assemblies created by different approaches, on pangenome construction have not been investigated. Here we generate haplotype-resolved assemblies from the offspring of three bovine trios representing increasing levels of heterozygosity that each demonstrate a substantial improvement in contiguity, completeness, and accuracy over the current Bos taurus reference genome. Diploid coverage as low as 20x for HiFi or 60x for ONT is sufficient to produce two haplotype-resolved assemblies meeting standards set by the Vertebrate Genomes Project. …


Does Swab Type Matter? Comparing Methods For Mannheimia Haemolytica Recovery And Upper Respiratory Microbiome Characterization In Feedlot Cattle, William B. Crosby, Lee Pinnell, John T. Richeson, Cory Wolfe, Jake Castle, John Dustin Loy, Sheryl P. Gow, Keun Seok Seo, Sarah F. Capik, Amelia R. Woolums, Paul S. Morley Jan 2022

Does Swab Type Matter? Comparing Methods For Mannheimia Haemolytica Recovery And Upper Respiratory Microbiome Characterization In Feedlot Cattle, William B. Crosby, Lee Pinnell, John T. Richeson, Cory Wolfe, Jake Castle, John Dustin Loy, Sheryl P. Gow, Keun Seok Seo, Sarah F. Capik, Amelia R. Woolums, Paul S. Morley

School of Veterinary and Biomedical Sciences: Faculty Publications

Background: Bovine respiratory disease (BRD) is caused by interactions among host, environment, and pathogens. One standard method for antemortem pathogen identification in cattle with BRD is deep-guarded nasopharyngeal swabbing, which is challenging, costly, and waste generating. The objective was to compare the ability to recover Mannheimia haemolytica and compare microbial community structure using 29.5 inch (74.9 cm) deep-guarded nasopharyngeal swabs, 16 inch (40.6 cm) unguarded proctology swabs, or 6 inch (15.2 cm) unguarded nasal swabs when characterized using culture, real time-qPCR, and 16S rRNA gene sequencing. Samples for aerobic culture, qPCR, and 16S rRNA gene sequencing were collected from the …


An Examination Of Ethical Attitudes Towards Wild Pig (Sus Scrofa) Toxicants In The United States, Keith Carlisle, Erin E. Harper, Stephanie A. Shwiff Jan 2022

An Examination Of Ethical Attitudes Towards Wild Pig (Sus Scrofa) Toxicants In The United States, Keith Carlisle, Erin E. Harper, Stephanie A. Shwiff

United States Department of Agriculture Wildlife Services: Staff Publications

This research aims to understand ethical attitudes of the U.S. public towards the use of a toxicant to control wild pigs (Sus scrofa), a destructive invasive species whose population growth is proving difficult to control through conventional management methods. Using a nationwide self-administered survey with 2,186 completed and returned questionnaires, we found that among six different lethal control methods, toxicant usage was the only method that a majority of respondents (51%) found to be unethical, with no significant differences between rural and urban respondents or between respondents from counties with wild pigs and counties where the species is absent. The …


Frugivory And Seed Dispersal By Carnivorans, John P. Draper, Julie K. Young, Eugene W. Schupp, Noelle G. Beckman, Trisha B. Atwood Jan 2022

Frugivory And Seed Dispersal By Carnivorans, John P. Draper, Julie K. Young, Eugene W. Schupp, Noelle G. Beckman, Trisha B. Atwood

United States Department of Agriculture Wildlife Services: Staff Publications

Seed dispersal is critical to the ecological performance of sexually reproducing plant species and the communities that they form. The Mammalian order Carnivora provide valuable and effective seed dispersal services but tend to be overlooked in much of the seed dispersal literature. Here we review the literature on the role of Carnivorans in seed dispersal, with a literature search in the Scopus reference database. Overall, we found that Carnivorans are prolific seed dispersers. Carnivorans’ diverse and plastic diets allow them to consume large volumes of over a hundred families of fruit and disperse large quantities of seeds across landscapes. Gut …


Aboveground Carbon Responses To Experimental And Natural Hurricane Impacts In A Subtropical Wet Forest In Puerto Rico, Hervé Chevalier, Nicholas V.L. Brokaw, Sheila E. Ward, Jess K. Zimmerman, Aaron B. Shiels, John Bithorn, Samuel Matta Carmona Jan 2022

Aboveground Carbon Responses To Experimental And Natural Hurricane Impacts In A Subtropical Wet Forest In Puerto Rico, Hervé Chevalier, Nicholas V.L. Brokaw, Sheila E. Ward, Jess K. Zimmerman, Aaron B. Shiels, John Bithorn, Samuel Matta Carmona

United States Department of Agriculture Wildlife Services: Staff Publications

Climate change and disturbance make it difficult to project long-term patterns of carbon sequestration in tropical forests, but large ecosystem experiments in these forests can inform predictions. The Canopy Trimming Experiment (CTE) manipulates two key components of hurricane disturbance, canopy openness and detritus deposition, in a tropical forest in Puerto Rico. We documented how the CTE and a real hurricane affected tree recruitment, biomass, and aboveground carbon storage over 15 years. In the CTE treatments, we trimmed branches, but we did not fell trees. We expected that during the 14-year period after initial canopy trimming, regrowth of branches and stems …


Behavioral States In Space And Time: Understanding Landscape Use By An Invasive Mammal, Steven M. Gray, John M. Humphreys, Robert A. Montgomery, Dwayne R. Etter, Kurt C. Vercauteren, Daniel B. Kramer, Gary J. Roloff Jan 2022

Behavioral States In Space And Time: Understanding Landscape Use By An Invasive Mammal, Steven M. Gray, John M. Humphreys, Robert A. Montgomery, Dwayne R. Etter, Kurt C. Vercauteren, Daniel B. Kramer, Gary J. Roloff

United States Department of Agriculture Wildlife Services: Staff Publications

Animal movement models can be used to understand species behavior and assist with implementation of management activities. We explored behavioral states of an invasive wild pig (Sus scrofa) population that recently colonized central Michigan, USA, 2014–2018. To quantify environmental factors related to wild pig movement ecology and spatio‐temporal landscape use, we predicted wild pig behavioral states relative to land cover type, landscape structure (i.e., edge and patch cohesion), and weather conditions. We used global positioning system (GPS)‐collars and monitored 8 wild pigs from 2014–2018. We fit local convex hulls and calculated movement metrics revealing 3 wild pig behavioral states (resting, …


Capture-Recapture Reveals Heterogeneity In Habitat-Specific Mongoose Densities And Spatiotemporal Variability In Trapping Success In St. Kitts, West Indies, Caroline C. Sauvé, Are R. Berentsen, Amy Gilbert, Anne Conan, Luis Cruz-Martinez, Patrick A. Leighton Jan 2022

Capture-Recapture Reveals Heterogeneity In Habitat-Specific Mongoose Densities And Spatiotemporal Variability In Trapping Success In St. Kitts, West Indies, Caroline C. Sauvé, Are R. Berentsen, Amy Gilbert, Anne Conan, Luis Cruz-Martinez, Patrick A. Leighton

United States Department of Agriculture Wildlife Services: Staff Publications

The small Indian mongoose (Urva auropunctata) is a non-native invasive species across the Caribbean and a rabies reservoir on at least four islands in the region. Although previous studies reported mongoose density estimates in their non-native range, the variability in trapping designs, study seasonality, and analytical methods among studies precludes direct comparisons. This study is the first to report mongoose densities for the island of St. Kitts, West Indies. Our objective was to quantify mongoose densities across four habitats characteristic for the island. High capture and recapture rates in this study resulted in detailed estimates of spatial heterogeneity …


Dammed Water Quality—Longitudinal Stream Responses Below Beaver Ponds In The Umpqua River Basin, Oregon, John R. Stevenson, Jason B. Dunham, Steven M. Wondzell, Jimmy Taylor Jan 2022

Dammed Water Quality—Longitudinal Stream Responses Below Beaver Ponds In The Umpqua River Basin, Oregon, John R. Stevenson, Jason B. Dunham, Steven M. Wondzell, Jimmy Taylor

United States Department of Agriculture Wildlife Services: Staff Publications

Beaver-related restoration (BRR) has gained popularity as a means of improving stream ecosystems, but the effects are not fully understood. Studies of dissolved oxygen (DO) and water temperature, key water quality metrics for salmonids, have demonstrated improved conditions in some cases, but warming and decreased DO have been more commonly reported in meta-analyses. These results point to the contingencies that can influence outcomes from BRR. We examined water quality related to beaver ponds in a diverse coastal watershed (Umpqua River Basin, OR, USA). We monitored water temperature 0–400m above and below beaver ponds and at pond surfaces and bottoms across …


Invasive Rodent Responses To Experimental And Natural Hurricanes With Implications For Global Climate Change, Aaron B. Shiels, Gabriela E. Ramírez De Arellano, Laura Shiels Jan 2022

Invasive Rodent Responses To Experimental And Natural Hurricanes With Implications For Global Climate Change, Aaron B. Shiels, Gabriela E. Ramírez De Arellano, Laura Shiels

United States Department of Agriculture Wildlife Services: Staff Publications

Hurricanes cause dramatic changes to forests by opening the canopy and depositing debris onto the forest floor. How invasive rodent populations respond to hurricanes is not well understood, but shifts in rodent abundance and foraging may result from scarce fruit and seed resources that follow hurricanes. We conducted studies in a wet tropical forest in Puerto Rico to better understand how experimental (canopy trimming experiment) and natural (Hurricane Maria) hurricane effects alter populations of invasive rodents (Rattus rattus [rats] and Mus musculus [mice]) and their foraging behaviors. To monitor rodent populations, we used tracking tunnels (inked and baited cards …