Biology Commons^™

Is There A Difference In Bird Diversity Among Prairie And Lake Habitats In Central Minnesota?, Emmi Edel, Morgan Cromwell, Maddy Fuller, Preston Mcgraw

Celebrating Scholarship and Creativity Day (2018-)

Biodiversity plays an essential role in ecosystem stability. Habitat changes from human activities also threaten this role. Our study examined how habitat type and urbanization affect the number of birds and bird diversity across two campuses in central Minnesota. The first campus is rural Saint John’s University (SJU), and the second is suburban College of Saint Benedict (CSB). We predicted that more bird species would be in habitats with water than habitats without water bodies. We also predicted that bird species numbers would be more significant on SJU, which has a large natural area, which CSB lacks. Observations were conducted …

Attention Deficits & The Biological Foundations Of Effective Learning Strategies, Matthew Scribner

Celebrating Scholarship and Creativity Day (2018-)

This capstone project will conduct a focused literature review on learning strategies for individuals with Attention Deficits Disorders. The project will explore various study strategies and modifications that have been found effective in improving learning outcomes for individuals with ADHD. Specifically, the project will delve into the neurobiological mechanisms underlying ADHD, focusing on how impairments in attention, executive function, and working memory might affect learning. It will also explore how specific modifications to study techniques can help mitigate these challenges and enhance learning outcomes. My interest in this topic stems from both my academic background as a teaching assistant in …

Positive Impact Of Mangroves On Periwinkle Snail (Littoraria Angulifera) Population Size, Anna Jones, Eva Kolbow, Lucy Petschel, Morgan Stone

Celebrating Scholarship and Creativity Day (2018-)

Mangroves play a crucial role as shoreline aquatic nurseries and provide infrastructure along bodies of water to protect inland areas from extreme weather and storm surges. Mangroves also provide a secure habitat for animals, and trap and filter pollutants. Their stilt roots provide shelter for fish species and are critical to the survival of many small species that use this ecosystem. We investigated mangrove periwinkle snail populations on the red mangrove species (Rhizophora mangle). Data was collected along Pigeon Creek, San Salvador Island, Bahamas in March 2025. We hypothesized that there is a relationship between mangrove density and snail population …

The Effect Of Anthropogenic Sound On Foraging Behavior In Bluegill Sunfish (Lepomis Macrochirus), Dayna Wiley

Celebrating Scholarship and Creativity Day (2018-)

Anthropogenic noise can have adverse effects on fish populations. High-amplitude noise can cause hearing damage and interfere with essential behaviors, including feeding, migration, and reproduction. Studies suggest that fish regularly exposed to boat noise in lakes exhibit different behavioral responses compared to populations in quieter environments. Bluegill sunfish (Lepomis macrochirus) were collected via angling from a “Quiet Lake” (Lake Sagatagan, Collegeville, MN) with no motor use, and a “Loud Lake” (Upper Spunk Lake, Avon, MN) with frequent motor use. Bluegill foraging behavior was examined in response to daily playback of motorboat traffic. Bluegill (n = 5 individuals per trial; n …

Spatiotemporal Changes In The Imperiled And Diverse Mussel Assemblage Of The Spring River In Kansas In Response To Known And Emerging Pollutants, Joshua Holloway

Electronic Theses & Dissertations

Kansas was historically home to 50 species of freshwater mussels, of which 42 remain extant. The Spring River of southeastern Kansas is home to 34 of the remaining 42 mussels, many of which are imperiled. Elevated metal concentrations that resulted from past lead and zinc mining in the Tri-State Mining District historically imperiled Spring River mussels, but this threat has abated over the last 20 years. Ammonia pollution may have replaced the threat of metals, however, with potentially severe consequences for Spring River mussels. Our objectives were to evaluate contemporary mussel assemblage structure, in addition to spatiotemporal trends in the …

Sympatric Behavior Of Tree Squirrels In An Urban Environment, Ryan L. Snyder

Undergraduate Honors Thesis Collection

The eastern gray squirrel (Sciurus carolinensis) and fox squirrel (Sciurus niger) are ubiquitous in urban ecosystems like university campuses despite the habitat loss and fragmentation often associated with urbanization. While populations of both species usually do not overlap in their native geographic ranges, gray and fox squirrels are sometimes forced into coexistence in urban habitats where fewer green spaces are available. The coexistence of both species at Butler University in Indianapolis, Indiana refutes the competitive exclusion principle, and niche partitioning is likely necessary for them to coexist. This study assessed the activity patterns of fox and gray squirrels at Butler …

Whole-Genome Assembly And Annotation Of The Firecracker Penstemon (Penstemon Eatonii), David E. Jarvis, Mikel R. Stevens, Payton Carter, Ying Fei Lin, Kate E. Jaggi, Gabriela Jijon, Teal Kalt, Jouber Calixto, Samantha Standring, Kaitlin Torres, Kayla B. Stephensen, Hayley Mangelson, Noah H. Williams, Carolyn A. Wessinger, Peter J. Maughan, Paul B. Frandsen

Faculty Publications

The penstemons are ornamental annual flowering plants native to the Intermountain West and Rocky Mountains and commonly used for urban landscaping. Elite commercial penstemons are generally susceptible to abiotic stresses, including drought, root rot, cold, and high salinity. Firecracker penstemon (Penstemon eatonii), however, is much more tolerant to these stresses than most elite cultivars. Importantly, firecracker penstemon has been reported to hybridize with many other penstemons and therefore provides the opportunity to develop more tolerant elite cultivars through strategic crossing. To facilitate the study and utilization of firecracker penstemon, we sequenced and annotated the genome of a P. …

Hotter Days, Sleepless Nights: The Effects Of Climate Change On Sleep, Arianne Johnson

Celebrating Scholarship and Creativity Day (2018-)

This literature review explores the intersection between environmental changes and human health. It has been found that climate change through rising temperatures, extreme weather events, and poor air quality, disrupts human sleep. This lack of sleep is linked to many physical and mental health concerns in humans. By examining previous research on the topic, this review emphasizes the need to incorporate sleep health in climate adaptation and public health strategies

Differential Regulation Of The Prkacaa Promoter In Zebrafish Melanoma Cell Lines, Maria Fiuk

Theses, Dissertations and Culminating Projects

The Inducible cAMP Early Repressor (ICER) comprises a group of isoforms that function as transcription factors within the cyclic AMP (cAMP) signaling pathway. These isoforms are encoded by the cAMP Response Element Modulator (CREM) gene. The cAMP signaling pathway and its associated transcriptional regulators have been implicated in the development of resistance to BRAF/MEK-targeted therapies in melanoma. Recent findings from our laboratory demonstrated that transgenic ICER expression in a zebrafish melanoma model promotes the formation of aggressive melanomas. Cell lines were established from tumors expressing ICER, as well as from control tumors expressing Green Fluorescent Protein (GFP). To begin characterizing …

Neuronal Tol-1 Integrates Microbial And Metabolic Cues To Modulate Feeding And Aversion In C. Elegans, Gursimran Singh Gujral

Theses, Dissertations and Culminating Projects

Toll-like receptors (TLRs) are key mediators of innate immunity, but emerging evidence suggests that they also play critical roles in the functioning of the central nervous system. This thesis explores the function of TOL-1, the Caenorhabditis elegans homolog of mammalian TLRs, in sensory neurobiology and behavioral responses to nutritive food. In particular, carbon dioxide and ethanol are commonly encountered in microbial environments and can signal metabolically active food sources or potential pathogens. Using tol-1 loss-of-function mutants, neuronal rescue lines, and a combination of molecular, tissue imaging, and behavioral assays, we demonstrate that TOL-1 functions in chemosensory neurons to regulate feeding …

Arthroscopy And The Future Of Surgery: Personal And Public Health Benefits, Preston T. Koski

Honors Thesis

Arthroscopy focuses on operating on the body using probes and working through keyhole incisions on the skin. This rapidly evolving field has seen many innovations in its technology, aided by advances in optical and surgical capabilities. Moreover, it presents many advantages over traditional surgery that directly impact the patient. Shorter recovery time and lessened scarring, reduced postoperative pain and opioid dependence, and less risk of infection are key benefits over open surgery. These benefits can also be applied to areas of public health. Minimizing the burden on hospital resources, reducing the environmental impact of surgery, and improving cost-effectiveness in healthcare …

Agrichemical Surfactant And Pathogen Impacts On The Blue Orchard Bee (Osmia Lignaria Say, Hymenoptera: Megachilidae), Mary-Kate F. Williams

All Graduate Theses and Dissertations, Fall 2023 to Present

Pathogens that infect commercially reared bee species, such as honey bees and bumble bees, have been extensively studied within the last several years, and studies that explore pathogen impacts on solitary bee health are significantly fewer. Consistent pesticide exposure methods are limited to honey bees and do not outline exposure routes to solitary bees, including how to test chemical impacts on immature stages. My research investigated blue orchard bee survival, development, and immune response following pathogen exposure while simultaneously studying organosilicone surfactant (OSS) exposure and possible synergisms between these two stressors. In my first research chapter (Chapter 2), I define …

The Effects Of Prenatal Cigarette Smoke Exposure On Developmental Milestones, Megan Jacobs

College of Arts & Sciences Senior Theses

In Kentucky, a reported 12.7% of mothers smoke cigarettes during pregnancy. Nicotine readily crosses the placental and blood-brain barriers, with fetal blood concentrations reaching 15% higher than maternal levels. By stimulating and desensitizing nicotinic acetylcholine receptors in the autonomic nervous system, nicotine disrupts uteroplacental blood flow, potentially altering fetal growth and development.

To investigate the effects of prenatal cigarette smoke exposure (CSE) on developmental milestones, C57Bl6 mice were exposed to either cigarette smoke (CSE, n = 30) or filtered room air (Sham, n = 20) for 3 hours daily from two days before mating until the day before birth. Offspring …

Risky Genes: The Impact Of Social Determinants Of Health On Dna Methylation In Indigenous Communities, Ella Martin

Celebrating Scholarship and Creativity Day (2018-)

Epigenetics is the study of molecular modifications to DNA structure that do not impact the sequence of the DNA itself. This biological study works to link health outcomes later in life with environmental interactions that affect our genetic predispositions. These complex factors can greatly impact longevity and quality of life. DNA methylation is one type of epigenetic mark that happens through natural biological processes. However, this marking has been shown to be detrimental to the process of aging and can be accelerated by harmful exposures such as stress, substance-use, or chemicals in the environment. Exposure to these compounds is exasperated …

Movement Ecology Of Sandhills Chub, A Carolina Endemic, Zachary Adam Ramsey

Electronic Theses and Dissertations

Fish movement studies have traditionally focused on species that support commercial and recreational fisheries, but recently more focus has been given to non-game, stream fishes because of their recognized importance in maintaining biodiversity within these ecosystems. Stream fish movement is described as being “restricted” and following a leptokurtic distribution via diffusive spread related to environmental and biological factors. Many studies of stream fish movement ecology in North America have occurred in high-gradient streams with coarse substrate in mountains or in streams of the interior plains. Sandhills streams of the southeastern USA are characterized as warm-water, low gradient, and dominated by …

Flow Field Surrounding Bluegill (Lepomis Macrochirus) During Suction-Feeding, Jensine Caroline Coggin

Electronic Theses and Dissertations

Suction-feeding is a common method for capturing prey by aquatic organisms and contributed to the diversification of fishes by enabling them to consume a wide range of prey. Suction-feeding is a complex fish-fluid interaction governed by various hydrodynamic forces: inertia, unsteady, viscous, and pressure gradients. These forces are described by the coupling between the flow physics equations (Navier-Stokes) and the dynamic behavior of the fish (motion and forces). However, the distribution of the pressure field that drives this process, and the extent to which suction-feeding is three-dimensional, remain underexplored. I estimated the pressure within the flow field surrounding the mouth …

Advancing Mitochondrial Dna Visualization And Dynamics In Plants: Application Of The Mt-Hi-Ness Fluorescent Marker, Madeleine H. Faber

Honors Program: Senior Projects (Public)

Mitochondrial DNA (mtDNA) plays a crucial role in cellular energy production and inheritance, yet its dynamics and exchange remain poorly understood in plant systems due to limitations in visualization techniques. Traditional visualization methods such as exogenous DNA stains and fluorescent protein markers present challenges in specificity and live-cell imaging. To address this challenge, we adapted the MT-HI-NESS fluorescent marker, originally developed for mammalian cells, for use in plant mitochondrial studies. Using Arabidopsis thaliana as a model system, we employed mitochondrial targeting sequences (IVD and AOX) to ensure accurate localization and to confirm mtDNA binding specificity. The validation process included fluorescence-based …

Effects Of Cadmium And Diet On Metal Accumulation And Kidney Cell Death Pathways., Justin Xu

College of Arts & Sciences Senior Theses

Cadmium (Cd) is a non-biodegradable environmental toxin and accumulates in the body with an estimated half-life of 30-45 years. Humans can be exposed to Cd through diet, drinking water, tobacco smoking, and industrial pollution. Cd can especially accumulate in the kidney due to the release of Cd from protein-metal complexes when filtering blood in the tubules causing oxidative stress and inducing kidney injury. Obesity is another risk factor for kidney disease therefore we examined the dual effects of Cd and obesity on the accumulation of essential metals in mouse kidneys. Starting in utero and continuing until 24 weeks postweaning, male/female …

Understanding The Properties Of Repair Protein P26 For Dry-State Preservation Of Biological Materials., Hannah Skaggs

College of Arts & Sciences Senior Theses

The preservation of complex biological materials in the frozen state has been well established and plays a critical role in the advancement of clinical applications and the pharmaceutical industry. Cryopreservation of complex biological materials has several clinical applications, including vaccine preservation, bone marrow transplants, cell therapeutics, and increasing the shelf life of red blood cells (RBCs) for transfusion. However, many challenges are present, including the use of toxic protective agents and the financial burden of maintaining extremely low temperatures between 193.15 and – 77.6 K (Parihar, Kumar et al. 2023). Lyophilization, or freeze-drying, presents an opportunity to mitigate such challenges. …

Recombinant Expression And Purification Of Porphyromonas Gingivalis Tyrosine Kinase 1 In Escherichia Coli., Laura K. Hanna

College of Arts & Sciences Senior Theses

The goal of this study was to optimize the expression and purification of Porphyromonas gingivalis Tyrosine Kinase 1 (Ptk1) in recombinant Escherichia coli containing the plasmids Gro_ESL and Ptk1, with a His₆ tag_, to obtain a highly pure protein sample. Various experimental conditions were tested to determine the most effective parameters for protein expression and purification, including adjustments in induction timing, buffer composition, and purification techniques.

Optimal protein expression was achieved when cells were induced at an optical density (OD) of 0.3 to 0.4. β-D-1-thiogalactopyranoside (IPTG), which activates the lac operon, was used to induce Ptk1 expression. A …

Evaluation Of Escherichia Coli Lithium Binding Properties, David Andrew Gonzalez

Theses (2016-Present)

Lithium is a commonly used element in everyday items such as batteries, electronics and industrial applications. With the common use of lithium comes the problem of what to do with lithium waste. This problem calls for the need of an efficient environmentally friendly recovery process. This study investigates the potential of Escherichia coli for lithium biosorption in aqueous solutions. Although the roles of copper and Bacillus coagulans were initially explored for comparative biosorption potential, they were not used in experimental trials. This study explores the potential of E. coli and its potential for lithium biosorption in water solutions. Lithium chloride …

Growth Of Methanogens Using Pyrite As An Energy Source: Implications For Life On Mars, Mckenzie K. Ragan

Biological Sciences Undergraduate Honors Theses

The search for life beyond Earth has been the motivating factor for many scientist’s research in the past and currently. Specifically, the efforts have largely been focused on Mars. Mars exhibits qualities that are similar to the life-harboring characteristics of Earth, creating the possibility for life to exist on Mars. Mars’ subsurface conditions may be ideal for specific microorganisms to thrive, providing a haven away from the harsh surface conditions (Mancinelli, 2000). It is known that one of the most important elements to support life, H₂O is found in the subsurface of Mars, along with an atmosphere lacking …

Metabolic Responses Of Adipose-Derived Stem Cells In Collagen I Hydrogels, Caroline R. King

Biological Sciences Undergraduate Honors Theses

Peripheral nerve injury affects approximately 44 in 1 million people in the United States every year and can lead to incomplete nerve recovery and loss of motor and sensory function. A significant amount of energy is required for nerve injury repair. A lack of energy allocation to the injury site hinders repair. Current treatments include hollow nerve guidance conduits, decellularized nerve grafts, and autografts. However, they are limited by factors such as donor site morbidity and sustained immunosuppressive treatments. Using three-dimensional collagen I hydrogels laden with adipose-derived stem cells (ASCs) can assist in neural regeneration. Three-dimensional collagen scaffolds aim to …

The Expression Of Intestinal Tight Junction Proteins Induced By 1,25-Dihydroxyvitamin D3-Glycosides Supplementation To Reduce Bacterial Chondronecrosis With Osteomyelitis Lameness In Broilers, Kennedy M. Hicks

Biological Sciences Undergraduate Honors Theses

Bacterial Chondronecrosis with Osteomyelitis (BCO) is a leading cause of lameness in broiler chickens, impacting animal welfare and commercial poultry production. Supplementation using organic trace minerals, vitamin D, probiotics, and prebiotics has been studied to mitigate BCO lameness incidences in broiler chickens. Our previous study demonstrated that feeding Panbonis®-G-1,25(OH)₂D₃ from Solanum glaucophyllum, containing 1 µg/kg G-1,25(OH)₂D₃, to broilers for the first 28 days of their production cycle reduced BCO lameness by approximately 50%. In this study, we investigated the impact of 1,25-dihydroxy vitamin D₃ supplementation on the expression of tight junction …

Immune Function Modulation By Temperature On Isolated Rainbow Trout Macrophages, Abby Hunter

Biological Sciences Undergraduate Honors Theses

Fever is an evolutionary mechanism that enhances immune function, yet the molecular and metabolic responses to fever temperatures in ectothermic species remain poorly understood. In this study, we investigated how fever temperatures (19° C) influence macrophage function and metabolic activity in rainbow trout (Oncorhynchus mykiss), rather than normal temperatures (16° C). Using a rainbow trout monocytic cell line, RTS11, and primary head kidney-derived macrophages (HKCs), we examined the effects of fever temperatures on nitric oxide (NO) production, gene expression, protein synthesis, and energy metabolism. We found that fever temperatures increased NO production in both cell types, with further …

The Impact Of Dimerization And Condensate Formation On Notch Signaling Outcomes, Tyler Michael William Lawton

Boise State University Theses and Dissertations

Communication between cells is the cornerstone of multicellular life. This communication is facilitated through signal transduction, wherein an environmental que activates a transducer on the surface of the cell or within it. This signal is recognized and transmitted in a way that integrates every other signal that the cell is receiving at the time, culminating in a dynamic dance of molecular components producing finely tuned responses to the cellular environment. Notch signaling facilitates direct communication between neighboring cells, as well as response to various microenvironmental stimuli, to influence cell differentiation and fate. As insinuated above, these communication pathways do not …

The Effects Of Pfos Exposure On Zebrafish Dopaminergic Neurodevelopment, Allison G. Fletcher

Departmental Honors & Graduate Capstone Projects

Per- and polyfluoroalkyl substances (PFAS) are a group of environmental contaminants that cause disruptions to the nervous and endocrine systems. Perfluorooctanesulfonate (PFOS) is considered one of the most disruptive PFAS to the nervous system, and may disrupt neurodevelopment of the dopaminergic system, which has been linked to neurodevelopmental disorders like Attention Deficit/Hyperactivity Disorder (ADHD) in humans. I hypothesized that early life PFOS exposure disrupts the development of the dopaminergic system. To test this hypothesis, I exposed zebrafish to 0.05, 0.5, and 5.0 mg/L PFOS through 5 days of embryonic and larval development. To assess acute effects of PFOS on the …

Regulation Of The Hypothalamic-Pituitary-Adrenal Axis Through Corticotropin-Releasing Factor Receptor 2 Activation And Androgens Acting On Androgen Receptors In Mice Exposed To Repeat Stress Conditions, David Reilly

Biological Sciences

The hypothalamic-pituitary adrenal (HPA)-axis is the body’s main neuroendocrine mechanism for regulating stress. It has been shown in both animal and human models that anxiety and depression like behavior is more prevalent in females compared to males. Studies have shown evidence that suggests there are sex differences in the HPA-axis that likely contribute to the observed sex difference. It has been shown that anxiety related behavior and HPA-axis responsiveness is correlated with androgens acting on androgen receptors (AR). The role of androgens acting on AR has a more unclear role in stress behavior and HPA-axis regulation when subjected to chronic …

Investigating The Effects Of Sod1 Knockout On Oxidative Stress And Stress Coping Styles In Zebrafish Using Crispr Technology, Tai Prauner, Ryan Wong

Theses/Capstones/Creative Projects

Reactive oxygen species are byproducts of cellular metabolism that, when not efficiently neutralized, can damage DNA, proteins, and lipids. Superoxide dismutase 1 (SOD1) is an antioxidant enzyme that converts superoxide radicals into less harmful molecules. While its molecular function is well documented, the role of SOD1 in shaping stress-related behavior remains underexplored. This project aimed to establish foundational tools for studying the behavioral impact of SOD1 knockout across proactive and reactive stress-coping styles in zebrafish.

To support future gene-editing experiments, microinjection and breeding protocols were refined across wildtype AB, proactive, and reactive zebrafish lines. No embryos were injected with CRISPR-Cas9 …

Ghosts In Glass: Ghost Crabs As Judges Of Glass Sand For Coastal Restoration, Emily Parrish

Honors Theses

Over 60% of the Gulf of Mexico coastline is actively eroding, which has resulted in thousands of miles of lost coastline over the last 100 years. This drastic loss of coastal land highlights the dire need for coastal restoration across the entirety of the Gulf Coast. A vital aspect of restoring these eroded areas is replenishing eroded substrate, traditionally conducted through offshore dredging of substrates which comes with high economic and ecological costs. Recycled glass sand may be able to fill this role and reduce our reliance on dredging while lowering the amount of glass waste entering landfills each year. …