Biology Commons^™

Noninvasive Monitoring Techniques: The Use Of Scat-Sourced Dna And Camera Traps To Monitor Mammalian Carnivore Species At The Ucf Arboretum, Zachary Montealegre

Honors Undergraduate Theses

The 800-acre University of Central Florida Arboretum Natural Lands functions as a conservation area, recreational space, and research site, making it essential to understand the ecological community it supports. Traditional wildlife monitoring methods such as mark-recapture and blood sampling can be effective but may stress animals or disrupt natural behaviors. To minimize these impacts, this study used non-invasive techniques, specifically scat-based DNA analysis and camera trapping, to assess carnivore species' presence. Two ecologically similar sites within the Arboretum were selected. Suspected carnivore scat was collected twice weekly over two months using both structured and opportunistic sampling. DNA was extracted, amplified, …

Invasion Of Microplastics Into The Reproductive Tissues Of Feral And Domestic Felines, Emma K. Quade

Honors Undergraduate Theses

Although plastics have many useful properties in modern society, once these materials are introduced into the environment, they can cause extensive damage. Following degradation into microplastics (MP), plastic particles less than 5 mm in size, these contaminants can make their way into a variety of different environments and organisms. There are many studies that have investigated the prevalence of MP in marine environments, but fewer studies have looked into terrestrial systems, and even less that have focused on contamination in companion animals. This study sought to investigate the invasion of MP into the reproductive tissues of felines, Felis catus, …

Assessing The Impact Of Storing Water Samples At Ambient Temperature On Plankton Metabarcoding, Stephanie N. Lievano

Honors Undergraduate Theses

Increasing incidence of Harmful Algal Blooms (HABs) has led to fish kills, air quality hazards, and economic impacts. One economic impact is on tourism, one of the main sources of Florida’s income, where billions of dollars are lost to such events. The Florida Fish and Wildlife Conservation Commission Fish and Wildlife Research Institute (FWC-FWRI), with the help of collaborators, collects water samples from across the state for HAB monitoring. These samples are stored at ambient temperature for up to 24 hours which could directly affect data analyses. Here, in collaboration with FWRI-FWC, I investigated whether this storage technique affects plankton …

Friends In Niche Places: An Examination Of Anole Abundance And Habitat Use In An Urban Environment Using Point Transect Distance Sampling, Ethan Gau

Honors Undergraduate Theses

Lizards in the genus anolis occupy a wide range of ecological niches, often sharing the same environment due to niche partitioning. In central Florida, the main species of anoles found are the native A. carolinensis and the invasive A. sagrei, two generalist anole species that partition into trunk-crown and trunk-ground niches in each other’s presences respectively. I surveyed the UCF main campus using Apollo Circle as the border for my study area, and I used point sampling to estimate the population abundance and density, while also collecting data on perch substrate, height, and canopy coverage. Population estimates for A. …

A Sensory Ecology Of Fear: Moonlight-Mediated Predation Risk And Foraging Behavior In Neotropical Electric Fish, Chiu Lok Poon

Graduate Studies Theses and Dissertations 2026

Animals must forage to acquire energy for survival and reproduction, yet foraging exposes them to predators. This creates a trade-off between energy intake and safety, wherein the perception of predation risk alone can alter activity patterns. Within this trade-off, risk, energetic needs, and sensory adaptations vary, shifting the balance and favoring different foraging strategies. Using Neotropical electric fish as a study system, I investigated how foraging under predation risk is shaped across biological scales, including environmental dynamics, interspecific sensory differences, activity-timing mechanisms, and intraspecific variations. These nocturnal fish emit continuous electric signals to sense their environment, allowing non-invasive monitoring of …

Seagrass Persistence In The Indian River Lagoon And Lake Worth Lagoon, Florida, Kelly Kibler, Melinda Donnelly, Vincent Encomio, Madison Giuntoli, Manisha Thenuwara, Brice Bennett, Laura Andrade Barron, Mariam Sonbol, Wynter Raine Seppala, Namritha Ramakrishnan, Jennifer Jordan Báez, Beth Orlando, Irene Arpayoglou, Melissa Meisenburg

Indian River Lagoon Shorelines

The spatial dataset: UCF_seagrasspersistence_IRL_LWL.shp was created with support from the Indian River Lagoon National Estuaries Program and Florida Sea Grant. These projects cumulatively led to creation of a living shoreline restoration prioritization model and hydrodynamic habitat suitability models for 1,550 km (963 miles) of estuarine shorelines in Indian River Lagoon (IRL) and Lake Worth Lagoon (LWL). The dataset presented herein represents persistence of seagrass throughout waters of the IRL and LWL.

Living Shoreline Prioritization And Hydrodynamic Habitat Suitability Models For Restoration In The Indian River Lagoon And Lake Worth Lagoon, Florida, Kelly M. Kibler, Melinda J. Donnelly, Vincent Encomio, Madison Giuntoli, Manisha Thenuwara, Brice Bennett, Laura Andrade Barron, Mariam Sonbol, Wynter Raine Seppala, Namritha Ramakrishnan, Jennifer Jordan Báez, Beth Orlando, Irene Arpayoglou, Melissa Meisenburg

Indian River Lagoon Shorelines

The spatial dataset: UCF_shorelinemodel_IRL_LWL.shp, was created with support from the Indian River Lagoon National Estuaries Program and Florida Sea Grant. These projects cumulatively led to creation of a living shoreline restoration prioritization model and hydrodynamic habitat suitability models for 1,550 km (963 miles) of estuarine shorelines in Indian River Lagoon and Lake Worth Lagoon.

The dataset presented herein includes:

1. shoreline data from >15,000 transects collected in the field,
2. shoreline wave climate data created through hydrodynamic modeling and frequency analysis of historic data,
3. categorization of potential risk for shoreline boat wake impact,
4. persistence of seagrass within 210 m of the shoreline, …

Investigating Soil Co2 Flux Among Varying Soil Types During Inundation Conditions, Jennifer Volk, Arya Patel

The Pegasus Review: UCF Undergraduate Research Journal

Land use change has contributed to the increase of carbon dioxide (CO₂) release, exacerbating global greenhouse gas (GHG) emissions. CO₂ is also naturally produced in the soil via microbial respiration which breaks down soil organic matter (SOM). Several studies have investigated factors affecting CO₂ flux from soils, but few have compared CO₂ flux from a range of soil types under controlled conditions with varying water levels. This study subjected intact soil cores from six different soil types to varied periods of inundation and dry events using the same water and timing. During each event, CO …

Evaluation Of Variable Selection Techniques On The Genetic Architecture Of Flowering Time In Maize, Felix Yeboah

Data Science and Data Mining

In this project, we investigate several variable selection procedures to give an overview of how well they perform on a genomic dataset using three different penalized regression approaches. Comparisons between different methods were performed. These methods include Ridge, lasso, and Elastic Net. We utilized 4494 observations with 7389 SNPs gene scores to predict time to male flowering (dtoa). We assessed the performance of these three models in terms of mean square error. Not surprisingly, Lasso and Elastic Net perform better than Ridge Regression. Overall, Elastic Net performed better in predicting the time of male flowering (dtoa).

Ai-Infused Discussion Boards: Enhancing Engagement, Reflection, And Academic Integrity In Anatomy And Physiology Education, Wade Dauberman

Teaching Repository of AI-Infused Learning

This paper presents the design, implementation, and evaluation of an AI-infused discussion board assignment that promotes ethical AI engagement, enhances student learning in anatomy and physiology, and addresses academic integrity concerns in higher education.

Salinity Effects On Cu(Ii) Bioremediation By Chlamydomonas Reinhardtii Microalgae, Jennifer Hughes

Honors Undergraduate Theses

Microalgae offer a sustainable approach to wastewater treatment by removing pollutants such as excess nutrients, CO₂, and heavy metals. Among various species, Chlamydomonas reinhardtii shows strong potential in removing Cu(II) ions from wastewater. In addition, salinity stress in C. reinhardtii has been linked to morphological and metabolic changes that enhance lipid and phytochemical production. While salinity stress has been studied for enhancing biofuel production, its impact on microalgal removal of heavy metals, particularly Cu(II), remains largely unexplored. Understanding how varying salinity conditions affect both algal growth and the efficiency of Cu(II) remediation could provide critical insights for improving integrated wastewater …

Florida Statewide Coastal Restoration Guide, Melinda J. Donnelly, Matthew Martin, Christen Fleming, Kelly Kibler, Linda Walters, Patrick Shearer, Lauren Jennison, Erika Lin, George Zaragoza

Faculty Scholarship and Creative Works

The Statewide Coastal Restoration Guide (SCRG) is a comprehensive planning resource developed through a collaboration between Florida Department of Environmental Protection (FDEP), University of Central Florida (UCF), and Resource Environmental Solutions (RES) to strengthen and unify shoreline restoration efforts across Florida. With over 4,500 miles of estuarine shoreline, Florida’s coasts are vital to the state’s ecological health, economic prosperity, and community resilience. However, they face increasing threats from sea level rise, stronger storms, erosion, habitat degradation, and development. The SCRG responds to these challenges by providing science-based, non-regulatory guidance for implementing resilient, nature-based restoration strategies that protect both ecosystems and …

‘Who’S Your Daddy?’: Ddradseq Parentage In Broodstock-Offspring Pairs Of Diadema Antillarum In A Population Restoration Initiative, Bianca R. Rosendahl

Undergraduate Scholarship and Creative Works

In the early 1980s Diadema antillarum, or the long-spined urchin, was hit by a catastrophic mass mortality event across the western Atlantic and Gulf of Mexico, inclusive of the Florida Keys. The cause of this die-off event was likely triggered by a pathogen or environmental stressor that decimated native populations by up to 98%. The species has not yet fully recovered and is struggling with recruitment success which is why it may benefit from an ex-situ recovery program. In this study, I used single nucleotide polymorphisms (SNPs) to identify genetic variation and analyze parentage in a captive population of …

Comparative Semiotic Analysis Of Non-Verbal Communication: Apis Mellifera Waggle Dance And Human Kinesic Signaling Systems, Nishtha Tikalal

Honors Undergraduate Theses

There are many parallels between two seemingly disparate forms of non-verbal communication: the waggle dance of Apis mellifera (honeybees) and human kinesic signaling systems. Through a comparative semiotic analysis, this research aims to conduct a comparative semiotic analysis, investigating structural and functional similarities between these communication methods, challenging anthropocentric assumptions about meaning making in the natural world. This research employs a meta-synthesis approach, drawn from a methodological literature review to examine historical representations of bee-human relationships, semiotics of non-verbal communication, and the specific mechanisms of the waggle dance and human kinesics. This methodology involves systematic categorization and analysis of extracted …

Tim/Tam Receptors: A Potential Biomarker For Predicting Sensitivity To Zika Virus-Induced Oncolysis In Non-Small Cell Lung Cancers, Shankari Somasekar

Honors Undergraduate Theses

Non-small cell lung cancers (NSCLC) constitute 80-85% of lung cancers and are the leading cause of cancer-related deaths globally. The most common cause is prolonged smoking. Current treatment options for NSCLC include surgery, radiation, chemotherapy, targeted drug therapy, and immunotherapy. Although these medications are effective in the short term, patients often face issues of drug resistance and debilitating side effects with prolonged use. Currently, the use of Zika virus (ZIKV) is being researched as a possible alternative treatment for cancer, which minimizes side effects and the risk of drug resistance. TIM/TAM proteins are identified as the putative ZIKV receptors on …

The Effectiveness Of Constructed Treatment Wetland Systems At Removing Microplastic Pollution, Katherine L. Johnsen

Honors Undergraduate Theses

Plastics are a highly utilized material in modem society, leading to environmental concerns surrounding plastic pollution. Microplastics, which are defined as plastic particles less than 5mm in size, have additionally become increasingly recognized as a harmful pollutant in aquatic systems. Constructed treatment wetland systems (CTWSs) are highly effective at removal and mitigation of pollutants, including anthropogenic nutrient inputs. This study aims to understand the potential of a CTWS to remove microplastic pollution from tertiary-treated municipal wastewater before discharge into a local natural water body. Microplastic percent removal was determined through the manual quantification of microplastics in triplicate 500mL surface water …

The Influence Of Genes On The Migratory Timing Of Great Reed Warblers, Emily Fackler

Honors Undergraduate Theses

Many organisms migrate; however, there is a lack of knowledge on the mechanisms that drive migration timing, including which genes play a role. The great reed warbler (Acrocephalus arundinaceus), a migratory bird that breeds in Eurasia and overwinters in sub-Saharan Africa, is an excellent model to study the genetics of migration. Each season, some individuals migrate early, whereas others migrate later in the season. In other words, they exhibit differences in their migratory chronotypes. Past research has identified three candidate genes (TOP1, PEAK1, and CPNE4) that influence the migratory chronotypes of another avian species, …

Monitoring Faunal Responses To Biodegradable Oyster Reef Restoration Materials With Camera Traps, Tara L. Blanchard

Honors Undergraduate Theses

Restoration of the oyster reefs has become increasingly crucial due to great population declines around the globe. Intertidal oyster reefs provide essential foraging and loafing grounds to many faunal species, including several threatened/endangered wading bird species. Biodegradable oyster reef restoration materials have been introduced to avoid potential plastic pollution from traditional materials. Studies have shown success regarding oyster recruitment rates to these materials. However, their impacts on fauna using restored oyster reefs are unknown. This project aims to evaluate oyster reef restoration using biodegradable materials to increase faunal diversity, abundance, and foraging behaviors. Camera traps were deployed to observe fauna …

Genetic And Biochemical Analysis Of Novel Borrelia Burgdorferi Genes Bb0244 And Bb0246, Christian J. Ruiz-Rodriguez

Honors Undergraduate Theses

As the cause of the most common vector-borne disease in the US, Borrelia burgdorferi continues to affect an estimated hundreds of thousands of patients each year. The spirochete boasts one of the most complex genomes in comparison to all other prokaryotes as it is fragmented across up to 21 different replicons. Moreover, the functions of a majority of the encoded genes remain unknown. Gene of unknown function, bb0244, along with putative co-transcribed genes bb0245, and bb0246 are hypothesized to be involved in the vital functions of cell division and cell wall biogenesis. B. burgdorferi lacking bb0244 demonstrate a significant growth …

Animating Animal Tracking Data In A Geospatial Context, Bruno V. Pinheiro

Honors Undergraduate Theses

In the field of ecology, animal tracking is core to understanding an animal’s behavior, space-use requirements, and suitable habitat. Utilizing the software created by this project, it is possible to visualize tracking data in its spatial and temporal context. The source code is written in R and leverages the Continuous-Time Movement Modeling (CTMM) package for statistical analysis. Utilizing CTMM, predicted or simulated movement paths can be generated with the user only needing to input their data. The Keyhole Markup Language (KML) is used to write a file containing all the animation parameters the user desires, such as the number of …

Abundance And Habitat Associations Of Bivalves In Mosquito Lagoon, A Preliminary Survey, Mariam Sonbol

Honors Undergraduate Theses

This study investigates the understudied abundance and habitat associations of bivalves in Mosquito Lagoon. Seagrass habitats were found to support the highest diversity of mollusks in earlier surveys (Mikkelsen et al., 1995). Twelve sites, including seagrass-vegetated, unvegetated, and seagrass-restored areas, were sampled in March and May 2024. Habitat characteristics, such as sediment composition and seagrass cover, were analyzed alongside bivalve populations. Across all sites, 6 genera were identified among 44 individuals. Overall abundance and diversity of bivalves collected were low in all sites, and most individuals were juveniles. Sediment characteristics influenced differences in diversity across site types, with restored sites …

Tropicalization Fact Sheet, Linda Walters, Carla Perscky

CEELAB Outreach Materials

The goal of this 2-sided fact sheet is to introduce the topic of tropicalization along our coastlines to young audiences and their families. Tropicalization is defined as, "the transformation of ecosystems by tropical organisms that migrate towards the poles in response to warming minimum winter temperatures."

Microplastics, Macro-Problems: Abundance Of Man-Made Materials In The Waters And Sediments Of Florida State Parks, Luciana M. Banquero, Kate Mclendon, Andres Alatorre, Mackenzie Daniels, Savanna Freeman, Cassidy Starke, Katherine Harris, Sidney J. Busch

The Pegasus Review: UCF Undergraduate Research Journal

Man-made materials (MMM) are pollutants introduced to the environment by human activity. Microplastics (MP) are a type of MMM that threaten living organisms through bioaccumulation. The term MMM also encompasses pollutants produced from natural materials, such as rayon and microfibrillated cellulose, which are used in food packaging. This study aims to determine the extent of MMM pollution within estuaries in two of Florida’s state parks, as well as the effectiveness of using restored vegetation on shorelines to reduce MMM pollution. Tomoka State Park and Gamble Rogers State Park were selected at the request of the Florida Department of Environmental Protection. …

Determining The Extent Of Pioneer Mangrove Acidification On Intertidal Oyster Reefs, Cindy Whitten, Andres Alatorre, Nicole Campbell, Savanna Freeman, Sydney Henderson, Kate Mclendon, Connor Wright, June Davison, Madison Ganci, Katherine Harris

The Pegasus Review: UCF Undergraduate Research Journal

The Indian River Lagoon (IRL) stretches 251 kilometers along Florida’s east coast and is one of the most biodiverse estuaries in North America. Mosquito Lagoon, the northernmost portion of the IRL, is home to mangroves and intertidal oyster reefs that provide numerous ecosystem services. These two habitats are overlapping as climate change drives mangroves poleward. Scientists have documented mangrove expansion and the transition of oyster reef habitat to mangrove islands. Past studies have shown large, adult mangrove stands drive soil acidification. The goal of this study was to understand if stand-alone, or pioneer, Rhizophora mangle (red mangroves) and Avicennia germinans …

Vertebrate Animal Behaviors And Abundances On Estuarine Shorelines Stabilized With Biodegradable Materials Utilizing Wildlife Cameras, Katherine Guise

The Pegasus Review: UCF Undergraduate Research Journal

Living shoreline stabilization is a restoration technique that utilizes natural materials as breakwaters, plus vegetation landward of the breakwaters, to protect coastlines. This research does not provide information about how new, biodegradable restoration materials affect vertebrates that utilize these shorelines. For this project, I monitored 18 restoration sites along Canaveral National Seashore with wildlife trail cameras: 3 made with cement-infused jute breakwaters, 3 with metal gabion oyster shell breakwaters, and 4 with previously used breakwaters manufactured from plastic mesh oyster shell bags. This project used 4 sites as positive controls (intact vegetation) and 4 as negative controls (highly eroded, no …

Investigating Plant Physiological Responses To Global Phylogenetic Diversity Of Glomeromycotina, David Z. Mowbray

Honors Undergraduate Theses

Arbuscular mycorrhizal (AM) fungi are ubiquitous symbionts of terrestrial plant species with associations predominantly characterized as mutualistic. In addition to well-documented enhancement of host growth response, more recent analyses have demonstrated the conferral of host benefits under numerous biotic and abiotic stressors. However, much of the established evidence originates from studies involving limited AM fungal diversity. Accordingly, this study sought to evaluate the potential effects of inoculation on plant host physiological traits within a growth chamber environment, investigate potential correlations between host trait responses, & assess the degree of phylogenetic signal observed in trait responses due to the presence of …

Responses Of A Pine Flatwoods Specialist Treefrog To Prescribed Fire, Ian Biazzo

Electronic Theses and Dissertations, 2020-2023

Coarse outcomes of prescribed fires are well-understood, but fine scale impacts on many assemblages are still unknown. When fire approaches, animals escape to unburned areas, hide in place, or are killed by fire. Treefrogs are unique in their use of trees for most of their adult nonbreeding activities. This reliance on uplands and three-dimensional landscape composition makes them a great model to study prescribed fire impacts. We focused analyses on an upland flatwoods specialist comprising 99% of our captures, the pinewoods treefrog Dryophytes femoralis. We assessed this species' responses to prescribed fire using two separate before-after-control-impact replicated field experiments in …

Refining The Use Of Stable Isotope Analysis In Detecting Wildlife Laundering, Kevin Guilfoyle

Electronic Theses and Dissertations, 2020-2023

The international wildlife trade has caused significant declines in wild populations. Captive breeding can reduce the pressure on wild populations caused by overcollection, but if not properly monitored, wildlife laundering can lead to further population declines. Improving the forensic ability to detect wildlife laundering will assist in monitoring the wildlife trade and enforcing regulations, thereby aiding recovery of wild populations. Stable isotope analysis has grown in importance as a forensic tool, but improvements are needed. Here, stable isotope analysis (δ13C) on eggshells of captive bred and wild sourced island apple snails (Pomacea maculata) distinguished between the two; eggshells of captive …

Variation In Genetic Structure And Dispersal Of Juvenile Green Turtles, Gustavo Stahelin

Electronic Theses and Dissertations, 2020-2023

Sea turtles are long-lived, globally distributed animals with a complex life-history. Individuals from different populations often share the same foraging areas (mixed stock aggregations). Understanding patterns of dispersal and connectivity between reproductive populations and mixed stock aggregations is fundamental for the development of effective conservation plans. Recently, green sea turtle (Chelonia mydas) populations in several reproductive areas have increased, providing an opportunity to evaluate how demographic changes in reproductive areas impact dispersal to, and the composition of, mixed stock aggregations. In this dissertation, I evaluated how dispersal from reproductive populations in the Greater Caribbean to mixed stock aggregations may have …

Clay As A Control Technique For Karenia Brevis: Water Chemistry Dynamics And Physiological Impacts On Benthic Invertebrates, Victoria Devillier

Graduate Thesis and Dissertation 2023-2024

Clay-based compounds are globally the most advanced and widely used method of direct suppression of marine harmful algal blooms, and are currently undergoing investigation as an option to control Karenia brevis blooms in Florida. Before clay may be accepted for widespread use, there are multiple concerns and challenges that must be addressed regarding the environmental safety of this method, such as effects on water quality, the fate of toxins, and potential impacts of clay treatment to non-target organisms. To contribute to ongoing assessments of clay as a potential control method for K. brevis blooms, we conducted experiments with a formulation …