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2022

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Articles 1 - 30 of 1814

Full-Text Articles in Biology

Sialylation And Fucosylation Modulate Inflammasome-Activating Eif2 Signaling And Microbial Translocation During Hiv Infection, Leila B. Giron, Ceylan E. Tanes, Mariane H. Schleimann, Phillip A. Engen, Lisa M. Mattei, Altizel Anzurez, Mohammad Damra, Huanjia Zhang, Kyle Bittinger, Frederic Bushman, Andrew Kossenkov, Paul Denton, Hiroaki Tateno, Ali Keshavarizian, Mohamed Abdel-Mohsen, Alan L. Landay Dec 2022

Sialylation And Fucosylation Modulate Inflammasome-Activating Eif2 Signaling And Microbial Translocation During Hiv Infection, Leila B. Giron, Ceylan E. Tanes, Mariane H. Schleimann, Phillip A. Engen, Lisa M. Mattei, Altizel Anzurez, Mohammad Damra, Huanjia Zhang, Kyle Bittinger, Frederic Bushman, Andrew Kossenkov, Paul Denton, Hiroaki Tateno, Ali Keshavarizian, Mohamed Abdel-Mohsen, Alan L. Landay

Biology Faculty Publications

An emerging paradigm suggests that gut glycosylation is a key force in maintaining the homeostatic relationship between the gut and its microbiota. Nevertheless, it is unclear how gut glycosylation contributes to the HIV-associated microbial translocation and inflammation that persist despite viral suppression and contribute to the development of several comorbidities. We examined terminal ileum, right colon, and sigmoid colon biopsies from HIV-infected virally-suppressed individuals and found that gut glycomic patterns are associated with distinct microbial compositions and differential levels of chronic inflammation and HIV persistence. In particular, high levels of the pro-inflammatory hypo-sialylated T-antigen glycans and low levels of the …

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Microplastics And Genetic Vectors Promoting The Dissemination Of Antimicrobial Resistance In Municipal Wastewater Treatment Processes, Ngoc Dung Pham Dec 2022

Microplastics And Genetic Vectors Promoting The Dissemination Of Antimicrobial Resistance In Municipal Wastewater Treatment Processes, Ngoc Dung Pham

Dissertations

The spread of antimicrobial resistance in the environment and especially its transfer into human pathogens have emerged as global issues. Activated sludge units at municipal wastewater treatment plants are "hotspots" converging a multitude of contaminants, including antibiotics, antibiotic-resistant bacteria (ARB), human pathogens, and microplastics. The prevalence of antibiotics can induce stress response of sludge microbial communities and promote the development of new resistance mechanisms and transmission venues, through which the dissemination of antibiotic resistance genes (ARGs) arises as mediated by mobile genetic elements (MGEs). In this doctoral dissertation, the impacts of microplastics and genetic vectors (i.e., MGEs and bacterial hosts) …

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Fool Me Once: Characterizing The Response Of Notophthalmus Viridescens To Multiple Exposures Of Batrachochytrium Salamandrivorans, Julia A. Mccartney Dec 2022

Fool Me Once: Characterizing The Response Of Notophthalmus Viridescens To Multiple Exposures Of Batrachochytrium Salamandrivorans, Julia A. Mccartney

Graduate Masters Theses

The repertoire of defenses a host may use against a pathogen is often thought of in the context of innate and adaptive immunity. However, the role of host symbionts such as the microbiome are being examined potentially as part of an individual’s defense against disease. Chytridiomycosis, caused by the fungal pathogens Batrachochytrium dendrobatidis (Bd) and Batrachochytrium salamandrivorans (Bsal), is characterized by an infection of the skin often leading to osmotic imbalance and mortality, and has resulted in losses in global amphibian biodiversity. Understanding what may influence the development of resistance to or tolerance of infection is critical to developing prevention …

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Phytochemical And Antibacterial Evaluations Of Chloroform Extract Of Mondia Whitei (Hook F) Skeels, Abdullahi Shehu, Ojochide Inikpi Egwemi, Olufunmilayo Adeola Ajayi, Abdulmumeen Amao Hamid Dec 2022

Phytochemical And Antibacterial Evaluations Of Chloroform Extract Of Mondia Whitei (Hook F) Skeels, Abdullahi Shehu, Ojochide Inikpi Egwemi, Olufunmilayo Adeola Ajayi, Abdulmumeen Amao Hamid

Tanzania Journal of Science

Mondia whitei, also known as Mondia, is an aromatic plant of Apocynaceae family. It is used as aphrodisiac, antidepressant, fertility medication and to improve appetite. The present study aimed to evaluate the phytochemical and antibacterial properties of the plant. The chloroform extract of M. whitei was screened for its antibacterial effects using agar diffusion method against five bacterial strains (Staphylococcus aureus, Pseudomonas aeruginosa, Escherichia coli, Klebsiella pneumoniae and Salmonella typhi). The extract was active against S. typhi, K. pneumoniae and S. aureus at 400, 400 and 200 mg/mL, respectively. The antibacterial activity of the extract was observed in a dose-dependent …

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Impacts Of Climate Change On Small Pelagic Fish Catches In The Coastal Artisanal Fishers Communities Of Tanzania, Lyidia Kapapa, Paul Onyango Onyango, Nibedita Mukherjee, Prosper Mfilinge Dec 2022

Impacts Of Climate Change On Small Pelagic Fish Catches In The Coastal Artisanal Fishers Communities Of Tanzania, Lyidia Kapapa, Paul Onyango Onyango, Nibedita Mukherjee, Prosper Mfilinge

Tanzania Journal of Science

Climate-related effects occur across all regions in Tanzania, affecting primary sectors such as agriculture and fishing. This study investigated the impacts of climatic change on small pelagic catches in fishers in Kilindoni, Kipumbwi and Kilwa Kivinje villages along the Tanzanian coast. We studied how changes in rainfall, sea surface temperature, wind speed and chlorophyll a affect small pelagic fisheries using primary and secondary data. Qualitative and quantitative methods were applied. Primary data collection involved questionnaires, focus group discussions and key informant interviews. Secondary data was obtained from Tanzania Meteorological Agency and remote sensing from Modi's sensor. Results showed an increase …

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Chemical Analysis, Antibacterial Activities And Uses Of Leaves And Calyces Of Hibiscus Sabdariffa Grown In Dodoma, Tanzania, Sartaz Begum, Derick R. Mwakimbwala, Gideon Sangiwa, Valence M.K. Ndesendo Dec 2022

Chemical Analysis, Antibacterial Activities And Uses Of Leaves And Calyces Of Hibiscus Sabdariffa Grown In Dodoma, Tanzania, Sartaz Begum, Derick R. Mwakimbwala, Gideon Sangiwa, Valence M.K. Ndesendo

Tanzania Journal of Science

Preliminary phytochemical screening of aqueous and ethanolic extracts of Hibiscus sabdariffa grown in Tanzania revealed the presence of secondary metabolites like steroids, tannins, saponins, glycosides, terpenoids, flavonoids along with L-ascorbic acid (vitamin C) and iron(II). Furthermore, both leaves and calyces showed antibacterial activities (agar well diffusion method) against selected bacterial species (Escherichia coli, Staphylococcus aureus, Salmonella typhi and Shigella sonnei), but calyces possessed potent antibacterial activities compared to leaves. The results also supported the claimed traditional uses of this plant. When interrogated during the cross-sectional study in Dodoma region, 54% of the respondents claimed the plant is used to treat …

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Antibacterial Potency Of Allium Sativum, Psidium Guajava, Zingiber Officinale Roots Against The Food Poisoning Strains (Escherichia Coli 0157:H7 And Staphylococcus Aureus), Godfrey O. Mauti Dec 2022

Antibacterial Potency Of Allium Sativum, Psidium Guajava, Zingiber Officinale Roots Against The Food Poisoning Strains (Escherichia Coli 0157:H7 And Staphylococcus Aureus), Godfrey O. Mauti

Tanzania Journal of Science

Escherichia coli 0157:H7 and Staphylococcus aureus are notorious food poisoning bacteria of great effect on human health. This study determined the phytochemical constituents of ethanolic, vacuum liquid chromatography (VLC) filtrates of Allium sativum (garlic), Psidium guajava (guava), Zingiber officinale (ginger) and their antibacterial activities on E. coli 0157:H7 and S. aureus. In a laboratory-based controlled experiment, the antibacterial and inhibitory activities of the VLC filtrates in doses of 0.01, 0.02, 0.04, and 0.08g/mL were investigated on E. coli 0157:H7 and S. aureus using the agar well diffusion method and compared with a standard antibiotic. The indices of the zone of …

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Morphological Variabilities And Identification Of Yam (Dioscorea Spp.) Genotypes From Major Growing Regions In Tanzania, Joseph I Massawe, Gladness E Temu Dec 2022

Morphological Variabilities And Identification Of Yam (Dioscorea Spp.) Genotypes From Major Growing Regions In Tanzania, Joseph I Massawe, Gladness E Temu

Tanzania Journal of Science

Yam (Dioscorea spp.) is a vegetatively propagated crop that belongs to the family Dioscoreaceae. In Tanzania, yam is mainly grown as a source of food and income generation, especially for smallholder farmers. In this study, an assessment of morphological variations among 74 genotypes of Dioscorea spp. collected from six major growing regions was conducted. Yam genotypes were maintained and planted at Tanzania Agricultural Research Institute-Kibaha for characterization. Data from fifty morphological variables were subjected to multivariate analysis using principal component analysis and cluster analysis. The first nine principal components with Eigenvalues > 1 accounted for 86.28% of the total variations. Some …

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Antimalarial And Antimicrobial Activities Of Some Heteroleptic Metal(Ii) Complexes Of Sulfadiazine–Vitamin C: Synthesis And Spectroscopic Studies, Ikechukwu P. Ejidike, Mercy O. Bamigboye, Dorcas A. Fadare, Juliana B. Adetunji, Joshua A. Obaleye Dec 2022

Antimalarial And Antimicrobial Activities Of Some Heteroleptic Metal(Ii) Complexes Of Sulfadiazine–Vitamin C: Synthesis And Spectroscopic Studies, Ikechukwu P. Ejidike, Mercy O. Bamigboye, Dorcas A. Fadare, Juliana B. Adetunji, Joshua A. Obaleye

Tanzania Journal of Science

Some new Ni(II), Zn(II), Co(II), Cu(II), and Cd(II) of mixed Sulphadiazine and Vitamin C complexes have been synthesized and characterized by different spectroscopic techniques such as FT-IR, elemental analysis, molar conductivity, and magnetic measurements. Both ligands used for this research work act as bidentate ligands towards the central metal ions coordinating through the nitrogen atoms of >C=N–, NH2 groups of Sulphadiazine and oxygen atoms of OH, CO groups of Vitamin C. Tetrahedral and square-planar geometries have been proposed for the complexes. The complexes are stable under atmospheric conditions. The ligands and their complexes were screened for antimicrobial activities against some …

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Quantifying Life History Energetics Of An Oviparous Elasmobranch Subject To Future Warming Water, Carolyn R. Wheeler Dec 2022

Quantifying Life History Energetics Of An Oviparous Elasmobranch Subject To Future Warming Water, Carolyn R. Wheeler

Graduate Doctoral Dissertations

Marine ectothermic fishes – fishes that do not regulate internal body temperature independent from the water temperature – are some of the most vulnerable organisms to rapid and alarming increases in environmental temperature occurring due to climate change mediated-ocean warming. For tropical fish species that live near their thermal maxima, this warming could be of grave consequence to individuals, populations, and whole marine ecosystems. Certain key life stages such as embryos and reproducing adults may be particularly vulnerable to warming given the excess energetic costs of these life stages, which may disallow compensation for extreme changes in temperature. One taxonomic …

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Isolation And Characterization Of Cellulose Degrading Microorganisms Generating Electricity Using Microbial Fuel Cell, Lama Fayad, Rania Amer, Ahmad Abd El Nabi, Ali Hammoud, Hoda Yusef Dec 2022

Isolation And Characterization Of Cellulose Degrading Microorganisms Generating Electricity Using Microbial Fuel Cell, Lama Fayad, Rania Amer, Ahmad Abd El Nabi, Ali Hammoud, Hoda Yusef

BAU Journal - Science and Technology

Global warming and the accumulation of organic waste constitute a serious environmental problem. Therefore, microbial fuel cells (MFC) are an eco-friendly device that have significant capability for the production of electricity using biodegradable waste as fuel. Microorganisms used as catalysts in the anode compartment, execute a principal function in operating MFCs. The present study was conducted to isolate and to screen potential bioelectricity generating microorganisms from dumpsite soil samples and also to construct a domestic dual-chambered microbial fuel cell (MFC). Streptomyces fimicarius was found to be the best isolate for the degradation of cellulose and the production of bioelectricity. The …

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Genetic Population Dynamics Of The Critically Endangered Scalloped Hammerhead Shark (Sphyrna Lewini) In The Eastern Tropical Pacific, Sydney P. Harned, Andrea Bernard, Pelayo Salinas-De-Leon, Marissa Mehlrose, Jenifer Suarez, Yolani Robles, Sandra Bessudo Lion, Felipe Ladino, Andrés López Garo, Ilena Zanella, Kevin A. Feldheim, Mahmood Shivji Dec 2022

Genetic Population Dynamics Of The Critically Endangered Scalloped Hammerhead Shark (Sphyrna Lewini) In The Eastern Tropical Pacific, Sydney P. Harned, Andrea Bernard, Pelayo Salinas-De-Leon, Marissa Mehlrose, Jenifer Suarez, Yolani Robles, Sandra Bessudo Lion, Felipe Ladino, Andrés López Garo, Ilena Zanella, Kevin A. Feldheim, Mahmood Shivji

Biology Faculty Articles

The scalloped hammerhead shark, Sphyrna lewini, is a Critically Endangered, migratory species known for its tendency to form iconic and visually spectacular large aggregations. Herein, we investigated the population genetic dynamics of the scalloped hammerhead across much of its distribution in the Eastern Tropical Pacific (ETP), ranging from Costa Rica to Ecuador, focusing on young-of-year animals from putative coastal nursery areas and adult females from seasonal aggregations that form in the northern Galápagos Islands. Nuclear microsatellites and partial mitochondrial control region sequences showed little evidence of population structure suggesting that scalloped hammerheads in this ETP region comprise a single …

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New Worm On The Block: Planarians In (Neuro)Toxicology, Danielle Ireland, Eva-Maria S. Collins Dec 2022

New Worm On The Block: Planarians In (Neuro)Toxicology, Danielle Ireland, Eva-Maria S. Collins

Biology Faculty Works

Traditional mammalian testing is too time- and cost-intensive to keep up with the large number of environmental chemicals needing assessment. This has led to a dearth of information about the potential adverse effects of these chemicals, especially on the developing brain. Thus, there is an urgent need for rapid and cost-effective neurotoxicity and developmental neurotoxicity testing. Because of the complexity of the brain, metabolically competent organismal models are necessary to understand the effects of chemicals on nervous system development and function on a systems level. In this overview, we showcase asexual freshwater planarians as an alternative invertebrate (“non-animal”) organismal model …

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Heat Stressed Exercise Elicits Shifts In Cooling Strategies Across Body Mass In Tropical Songbirds, Kristen Dee Oliver Dec 2022

Heat Stressed Exercise Elicits Shifts In Cooling Strategies Across Body Mass In Tropical Songbirds, Kristen Dee Oliver

Biology ETDs

In resting animals, water use positively correlates with metabolic rate, for example smaller animals using proportionally more water per gram of body mass. However, animals also must endure heat and exertion, and evaporative cooling requires additional water use that may not scale similarly with body size. How evaporative water loss allometrically scales with body mass during heat-stressed exercise is poorly resolved, particularly for birds, yet is critically important for understanding the consequences of climate warming on the fitness of bird populations. Here, we evaluated how air temperature (Ta) influenced evaporative water loss during exercise (EWLexercise) across …

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Niche Modeling Of Eight Crayfish Species In Texas, Nathan Schubert Dec 2022

Niche Modeling Of Eight Crayfish Species In Texas, Nathan Schubert

Biology Theses

Freshwater species make up ~10% of all known species and occupy less than one percent of earth’s habitat, which is being degraded by human usage. Crayfish have a large impact on their aquatic or terrestrial environment and can serve as a health indicator of aquatic environments, as they generally require undegraded environments. In many habitats, crayfish make up more than half of the macroinvertebrate biomass, and play important ecological roles, as a food resource for both aquatic and terrestrial species, as predators of fish and invertebrates, and as bioprocessors of vegetation and detritus. The objective of this project was to …

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Therapies For Mitochondrial Disorders, Kayli Sousa Smyth, Anne Mulvihill Dec 2022

Therapies For Mitochondrial Disorders, Kayli Sousa Smyth, Anne Mulvihill

SURE Journal: Science Undergraduate Research Experience Journal

Mitochondria are cytoplasmic, double-membrane organelles that synthesise adenosine triphosphate (ATP). Mitochondria contain their own genome, mitochondrial DNA (mtDNA), which is maternally inherited from the oocyte. Mitochondrial proteins are encoded by either nuclear DNA (nDNA) or mtDNA, and both code for proteins forming the mitochondrial oxidative phosphorylation (OXPHOS) complexes of the respiratory chain. These complexes form a chain that allows the passage of electrons down the electron transport chain (ETC) through a proton motive force, creating ATP from adenosine diphosphate (ADP). This study aims to explore current and prospective therapies for mitochondrial disorders (MTDS). MTDS are clinical syndromes coupled with abnormalities …

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Antibody Epitope Profiling Of The Kshv Lana Protein Using Virscan, Sydney J. Bennett, Dicle Yalcin, Sara R. Privatt, Owen Ngalamika, Salum J. Lidenge, John T. West, Charles Wood Dec 2022

Antibody Epitope Profiling Of The Kshv Lana Protein Using Virscan, Sydney J. Bennett, Dicle Yalcin, Sara R. Privatt, Owen Ngalamika, Salum J. Lidenge, John T. West, Charles Wood

School of Biological Sciences: Faculty Publications

The humoral antibody response against Kaposi sarcoma-associated herpesvirus (KSHV) in infected individuals has been characterized demonstrating the latency-associated nuclear antigen (LANA) as the most antigenic KSHV protein. Despite the antigenicity of the protein, specific LANA epitopes have not been systematically characterized. Here, we utilized a bacteriophage T7 library, which displays 56-amino acid KSHV LANA peptides with 28-amino acid overlap (VirScan), to define those epitopes in LANA targeted by antibodies from a cohort of 62 sub-Saharan African Kaposi sarcoma (KS) patients and 22 KSHV-infected asymptomatic controls. Intra- and inter-patient breadth and magnitude of the anti-LANA responses were quantified at the peptide …

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Droughts Reduce Growth Rates And Increase Vulnerability To Increasingly Frequent And Severe Drying Events In An Aquatic Ectotherm, Thomas M. Luhring, Lyndsie S. Wszola, Grant M. Connette, Christopher M. Schalk Dec 2022

Droughts Reduce Growth Rates And Increase Vulnerability To Increasingly Frequent And Severe Drying Events In An Aquatic Ectotherm, Thomas M. Luhring, Lyndsie S. Wszola, Grant M. Connette, Christopher M. Schalk

School of Biological Sciences: Faculty Publications

Many aquatic organisms are experiencing increasingly severe and frequent droughts and drying events. Simultaneously, drought effects are carrying over to non-drought years as ecosystems remain in incomplete states of recovery. Aquatic organisms are thus faced with fewer sequential years under degraded environmental conditions to prepare for increasingly severe droughts and potential drying events. We assessed the effect of droughts and sex on the growth, mass, and mass-dependent estivation potential of long-lived aquatic salamanders (Greater Sirens, Siren lacertina) that estivate during drying events brought on by severe droughts. We calculated growth rates of S. lacertina based on mark–recapture data spanning …

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Droughts Reduce Growth Rates And Increase Vulnerability To Increasingly Frequent And Severe Drying Events In An Aquatic Ectotherm, Thomas M. Luhring, Lyndsie S. Wszola, Grant M. Connette, Christopher M. Schalk Dec 2022

Droughts Reduce Growth Rates And Increase Vulnerability To Increasingly Frequent And Severe Drying Events In An Aquatic Ectotherm, Thomas M. Luhring, Lyndsie S. Wszola, Grant M. Connette, Christopher M. Schalk

School of Biological Sciences: Faculty Publications

Many aquatic organisms are experiencing increasingly severe and frequent droughts and drying events. Simultaneously, drought effects are carrying over to nondrought years as ecosystems remain in incomplete states of recovery. Aquatic organisms are thus faced with fewer sequential years under degraded environmental conditions to prepare for increasingly severe droughts and potential drying events. We assessed the effect of droughts and sex on the growth, mass, and mass-dependent estivation potential of long-lived aquatic salamanders (Greater Sirens, Siren lacertina) that estivate during drying events brought on by severe droughts. We calculated growth rates of S. lacertina based on mark–recapture data spanning …

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Thermal Tolerance And Physiology Of Eleutherodactylus Coqui Along An Elevational Gradient In Hawai‘I, Karen H. Beard, Susannah S. French, Jack Marchetti Dec 2022

Thermal Tolerance And Physiology Of Eleutherodactylus Coqui Along An Elevational Gradient In Hawai‘I, Karen H. Beard, Susannah S. French, Jack Marchetti

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The purpose of this study was to determine if the thermal tolerance and physiology of the coqui frog changed along HawaiÔiÕs elevation gradient. A short acclimation experiment was used to test the baseline thermal tolerance and physiology, and an extended acclimation experiment to test the acclimation ability of the thermal tolerance and physiology metrics of the coqui frogs collected from low (m), medium (350-550 m) and high elevations (>750 m).

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Roles Of Individual Protein In De Novo Polycomb Protein Recruitment, Piao Ye Dec 2022

Roles Of Individual Protein In De Novo Polycomb Protein Recruitment, Piao Ye

Biological Sciences Theses and Dissertations

Polycomb Group (PcG) proteins are evolutionarily conserved epigenetic transcriptional regulators that maintain the transcriptional repression of silenced genes by maintaining heritable chromatin states. PcG proteins first discovered as repressors of Hox genes in Drosophila, later were shown to regulate a wide range of genes. In mammals, PcG proteins are involved in maintaining pluripotent state of stem cells and controlling cell differentiation. Misexpression of PcG protein leads to cancers like lymphoma and melanoma. PcG proteins maintain rather than initiate transcriptional repression, once PcG – mediated repression is established it can be maintained through an unlimited number of cycles. Most studies of …

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Elevation Influences The Microhabitat Use And Baseline Physiology Of Coqui Frogs In Hawai‘I, Karen H. Beard, Susannah S. French, Jack Marchetti Dec 2022

Elevation Influences The Microhabitat Use And Baseline Physiology Of Coqui Frogs In Hawai‘I, Karen H. Beard, Susannah S. French, Jack Marchetti

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The purpose of this study was to determine whether elevation in HawaiÔi affects the coquiÕs microhabitat use such as substrate choice and height off the forest floor and physiological metrics such as osmolality, oxidative status, and energy metabolites (glucose, free glycerol, and triglycerides).

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Benthic Macroinvertebrate Pre-Assessment Of A Proposed Restoration In The Grand River, Grand Rapids, Mi, Usa, Matthew L. Bain Dec 2022

Benthic Macroinvertebrate Pre-Assessment Of A Proposed Restoration In The Grand River, Grand Rapids, Mi, Usa, Matthew L. Bain

Masters Theses

River restoration is the dominant field of applied water resources management in the United States. Ecological improvement should be the goal of all river restorations, though many restoration projects fail to produce positive results due to limited scope or inadequate assessment methodologies. Pre-restoration, biotic data is essential for such projects as it can be paired with post-restoration data to gauge ecological outcomes. A major restoration effort is now underway in Michigan's longest river, the Grand River, where it flows through downtown Grand Rapids. The primary restoration measures will occur in-stream at local scale. We conducted a pre- restoration survey for …

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Relationships Among Age, Relative Telomere Length, And Dna Methylation In Pteropus Bats, Erika E. Forest Dec 2022

Relationships Among Age, Relative Telomere Length, And Dna Methylation In Pteropus Bats, Erika E. Forest

Masters Theses

Bats are the longest-lived mammalian order relative to body mass, but questions remain about relationships among mechanisms related to aging. Relative telomere length (rTL) decreases with age in most mammals, but the relationship between age and rTL is highly variable among the few bat taxa studied to date. More recently, DNA methylation (DNAm), a type of epigenetic regulation in which methyl groups are added to cytosine-phosphate-guanine (CpG) sites across the genome, has been shown to be highly predictive of age in many species of bats. We examine the relationships among age, rTL, and DNAm in Pteropus pumilus and P. hypomelanus …

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Optimized Production Of Second-Generation Bioethanol From A Spent C4 Grass: Vetiver (Chrysopogon Zizanioides), Sameer Neve, Dibyendu Sarkar, Zhiming Zhang, Rupali Datta Dec 2022

Optimized Production Of Second-Generation Bioethanol From A Spent C4 Grass: Vetiver (Chrysopogon Zizanioides), Sameer Neve, Dibyendu Sarkar, Zhiming Zhang, Rupali Datta

Michigan Tech Publications, Part 1

Vetiver grass (Chrysopogon zizanioides) is well-known for its contaminant phytoextraction potential and its capacity to reduce soil erosion, owing to its massive, dense root system. However, the shoots are not major contributors to either of these processes, and are either not utilized at all or they become part of the waste stream. It is well-recognized that lignocellulosic biomass can serve as a source of raw material to produce second-generation bioethanol. This study investigated the simultaneous saccharification and fermentation (SSF) of acid–alkali pretreated vetiver (VG) shoots by Saccharomyces cerevisiae. Vetiver shoots were obtained from three sources: (1) shoots from VG grown …

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The Y-Chromosome's Role In Sexually Dimorphic Evolution And Mother's Curse Compensation, Tobias Nielsen Dec 2022

The Y-Chromosome's Role In Sexually Dimorphic Evolution And Mother's Curse Compensation, Tobias Nielsen

Electronic Theses and Dissertations, 2020-2023

The Y-chromosome and mitochondria (containing mtDNA) appear entirely dissimilar, the former being a sex chromosome found in the nucleus and the latter an organelle with thousands of copies in the cytoplasm. However, both experience uniparental inheritance, with Y-chromosomes being patrilineal and mitochondria matrilineal. This leads to various other similarities including haploidy, high mutation rates, and limited or lack of genetic recombination. Moreover, the low number of protein-coding genes contained on both led to the belief that neither contributes significantly to the adaptive evolution of complex traits. However, recent studies show the Y-chromosome and mitochondria both influence roughly 10% of male …

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An Amino-Terminal Fragment Of Apolipoprotein E4 Leads To Behavioral Deficits, Increased Phf-1 Immunoreactivity, And Mortality In Zebrafish, Madyson M. Mccarthy, Makenna J. Hardy, Saylor E. Leising, Alex M. Lafollette, Erica S. Stewart, Amelia S. Cogan, Tanya Sanghal, Katie Matteo, Jonathon C. Reeck, Julia T. Oxford, Troy T. Rohn Dec 2022

An Amino-Terminal Fragment Of Apolipoprotein E4 Leads To Behavioral Deficits, Increased Phf-1 Immunoreactivity, And Mortality In Zebrafish, Madyson M. Mccarthy, Makenna J. Hardy, Saylor E. Leising, Alex M. Lafollette, Erica S. Stewart, Amelia S. Cogan, Tanya Sanghal, Katie Matteo, Jonathon C. Reeck, Julia T. Oxford, Troy T. Rohn

Biology Faculty Publications and Presentations

Although the increased risk of developing sporadic Alzheimer’s disease (AD) associated with the inheritance of the apolipoprotein E4 (APOE4) allele is well characterized, the molecular underpinnings of how ApoE4 imparts risk remains unknown. Enhanced proteolysis of the ApoE4 protein with a toxic-gain of function has been suggested and a 17 kDa amino-terminal ApoE4 fragment (nApoE41-151) has been identified in post-mortem human AD frontal cortex sections. Recently, we demonstrated in vitro, exogenous treatment of nApoE41-151 in BV2 microglial cells leads to uptake, trafficking to the nucleus and increased expression of genes associated with cell toxicity …

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Analysis Of Regulatory Element Variation In Autism Spectrum Disorder, Evin Mitchel Padhi Dec 2022

Analysis Of Regulatory Element Variation In Autism Spectrum Disorder, Evin Mitchel Padhi

Arts & Sciences Graduate Student Theses and Dissertations

Autism Spectrum Disorder (ASD) is a highly prevalent neurodevelopmental disorder that affects over 2% of the population. Studies of this disorder have demonstrated that genetics plays a strong role in the underlying etiology and over the past decade, substantial progress has been made in elucidating the genetic architecture. Large-scale studies have now been conducted to identify the genes involved in the genetic architecture by analyzing data from over 40,000 probands. However, the identification and characterization of regulatory elements involved have remained non-trivial for many reasons. Generally, studies that have analyzed whole genome sequencing (WGS) have demonstrated enrichment of de novo …

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Functional Analysis Of Recurrent Non-Coding Variants In Human Melanoma, Paula Maria Godoy Dec 2022

Functional Analysis Of Recurrent Non-Coding Variants In Human Melanoma, Paula Maria Godoy

Arts & Sciences Graduate Student Theses and Dissertations

Worldwide incidence rates of cutaneous melanoma are increasing, and while survival rates for early stages of melanoma are high, rates drop precipitously for metastatic melanomas or those that are unable to be targeted by currently available treatments. As melanomas have a propensity to quickly metastasize, understanding the contributions of melanoma initiation remains critical for early intervention. Onset of melanoma is characterized most by mutations that stimulate mitogen-activated protein kinase (MAPK) signaling, disrupt DNA damage checkpoints, and trigger mechanisms to bypass senescence through elongation of telomeres. Additionally, in zebrafish melanoma models, the earliest cluster of melanoma-initiating cells activate expression of a …

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Understanding Gene Regulation With High-Throughput Genome-Integrated Reporter Assays, Clarice Hong Dec 2022

Understanding Gene Regulation With High-Throughput Genome-Integrated Reporter Assays, Clarice Hong

Arts & Sciences Graduate Student Theses and Dissertations

Proper spatiotemporal gene expression depends on specific interactions between cis-regulatory sequences (CRSs) and chromatin modifications at a genomic location. However, we do not yet understand the rules that determine how CRSs work together to influence gene expression. The goal of this thesis is to systematically assay and quantify how different genomic environments interact with CRSs to control gene expression output using a variety of genome-integrated massively parallel reporter assays (MPRAs). First, we tested the hypothesis that core promoters confer specificity by only responding to compatible enhancers and chromatin in specific genomic environments. We measured the activities of hundreds of core …

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