Biology Commons^™

The Role Of Seed Mix Characteristics And Soil Amendments During Post-Agricultural Prairie Restoration, Valerie N. Thurston, Michaela J. Woods, Madelaine Gregory, Mary C. Lloyd, Ryan W. Mcewan

Biology Faculty Publications

Introduction: Prairie restoration on degraded lands may be influenced by seed mix characteristics, including species richness and legume establishment. Soil amendments may facilitate restoration; however, the practical usefulness of techniques such as applications of whole soil and leaf mulch remains relatively unclear.

Objectives: We assessed whether increasing species richness and legume content in seed mixes enhances prairie restoration success and examined how soil amendments interact with seed mix composition to influence cover, species richness, diversity, and legume establishment.

Methods: We conducted a field experiment on a 12-ha post-agricultural site in Ohio, U.S.A. Twenty 50 × 50 m plots received one …

Invasive African Fig Flies (Zaprionus Indianus) Have Reduced Cold Acclimation Ability Compared To Cosmopolitan Drosophilid Species, Mia Hollekim, Lucy Smith, Priscilla A. Erickson

Biology Faculty Publications

Zaprionus indianus, an invasive species of fruit fly originating from Africa, has successfully inhabited eastern North America but is thought to be seasonally limited by cold temperatures. We compared the cold acclimation abilities of Z. indianus to six drosophilid species. Each species’ survival at -5°C was tested following acclimation periods at 10°C, 15°C, and 25°C. We found that Z. indianus had a similar baseline cold tolerance to other cosmopolitan species and acclimated following treatment at 15°C. Overall, cold acclimation in Z. indianus was better than tropical species but weaker than some cosmopolitan species, suggesting cold may restrict Z. indianus …

Colonization Of Southern Flying Squirrels (Glaucomys Volans) To Urban Nebraska: Range Expansion Or Human Assisted Translocation?, Jennifer Wettschreck, James Wilson, Robert E. Wilson, Abby May, Megan Cary, Jeffrey Huebschman, Sarah A. Sonsthagen

Biology Faculty Publications

Southern flying squirrels (Glaucomys volans; Linnaeus 1758) were first observed in Lincoln, Nebraska, in 2018, 80 km north of their described range. Given that southern flying squirrels are a species of concern within Nebraska, determining the origin of this new population (natural expansion or pet-trade) garnered interest from state biologists. Further, the recent colonization of Lincoln by southern flying squirrels presents a unique opportunity to investigate the genetic implications of a founding event on a small arboreal mammal. The Lincoln population had genetic characteristics suggestive of a single-event colonization with fewer rare alleles and lower genetic diversity than potential …

Employing Zebrafish To Understand Genetic Drivers Of Epilepsy-Related Comorbid Behaviors, Chinwendu Ononuju, Kharma Hall, Olivia Beatty, Scott C. Baraban, Colleen Carpenter-Swanson

Biology Faculty Publications

Children with epilepsy frequently experience a range of significant comorbidities beyond seizures, such as motor dysfunction, cognitive impairment, and neurodevelopmental delays. In some cases, these comorbidities contribute more significantly to overall disease burden than the seizures themselves. To improve quality-of-life (QOL) for these children, treatment options should be selected that control seizures and ameliorate comorbidities. Unfortunately, such therapeutics remain largely elusive. Addressing this issue requires suitable preclinical models. Here we used CRISPR-generated zebrafish with single-gene mutations linked to pediatric epilepsy and applied clinically-relevant behavioral assays to study the effects of these mutations. Using high-throughput locomotion-based assays, we uncovered errors in …

Designing Life Science Assessments In The Era Of Generative Artificial Intelligence, Andrew C. Kwong, Christopher Magnano, Christine Goglia, Joseph J. Loparo, John J. Peters

Biology Faculty Publications

Generative artificial intelligence (GAI) algorithms have the potential to reshape education. Though GAI may help democratize access to education, it also presents many challenges for educators. Already, the ease of use of GAI has made it easier for students to bypass learning gains by prompting GAI for answers to assignments. Here, we assessed how ChatGPT performed on take-home assignments in a doctoral-level molecular biology course designed to train students in experimental design. Using Bloom’s taxonomy as a framework, we hypothesized that ChatGPT would perform similarly to doctoral students on lower cognitive levels involving memorization and underperform at higher levels that …

Cryptic Diversity Within Nyctixalus (Anura: Rhacophoridae): A New Species, A Resurrection, And A Redescription, Jennifer Dever, Jimmy A. Mcguire, Djoko T. Iskandar, Amir Hamidy, Lee L. Grismer

Biology Faculty Publications

The examination of molecular markers confirms hidden diversity and reveals a new species within the Nyctixalus pictus (Peters, 1871) complex. Three genetically distinct clades were recovered: one from the Thai-Malay Peninsula; one from Sumatra, Indonesia; and one from Sarawak, Borneo, East Malaysia. Voucher specimens from each region were compared, and significantly different mean values were found through morphological analyses. The populations also differ significantly in morphospace, as determined by PCA, DAPC, and MFA analyses. The Thai-Malay Peninsula individuals have a distinct, rounded and slightly elongated snout shape compared to the other two clades. Based on these combined data, these three …

Further Investigation Of The Effect Of Estrogen On Candida Albicans Filament Growth On Different Liquid Media, Authors

Biology Faculty Publications

No abstract provided.

Do Magnesium Ions Have Similar Effects As Calcium Ions On Resting Membrane Potential?, Anthony Hana, Youngwoo Kim, Joy Bidros, Katie Neglia, Robin L. Cooper

Biology Faculty Publications

Maintaining a membrane electrical potential of biological cells is a dynamic process, as some cells have a continually changing potential, like pacemaker cells, while other cells may function with large or small changes in the membrane potential. Additionally, some cells may change their electrical potential when stimulated or inhibited by electrical signals, chemical compounds, or both—either simultaneously or episodically. The persistent leak of K⁺ through two-pore-domain potassium channels (K2P) and of Na⁺ through Na⁺ leak channels (NALCNs) and the action of pumps and exchangers are primarily responsible for maintaining a resting potential. Ca²⁺ ions are known …

An Evolving View Of Lineage Diversification, Pascal O. Title, L. Francisco Henao-Díaz, Rosana Zenil-Ferguson, Thais Vasconcelos

Biology Faculty Publications

Systematists have long been fascinated by the astounding variation in species diversity across the various branches of the tree of life, a net result of the uneven rates at which lineages undergo speciation and extinction over time. The past 30 years have seen the development and widespread application of tools that allow diversification to be quantified and characterized in empirical data sets. These advances have, in turn, enabled the statistical evaluation of hypotheses about the causes behind the uneven distribution of species richness among lineages, leading to a more nuanced understanding of diversification rate variation, as reflected in an ever-expanding …

Exogenous Estradiol Does Not Regulate Daily Metabolic Rhythms Underlying Diet-Induced Obesity In Male Mice, W. Brad Osborne, Oliver Vöcking, Victoria Alvord, Oluwabukola Omotola, Yuriko Katsumata, Julie S. Pendergast

Biology Faculty Publications

Male mice fed high-fat diet become obese, but female mice are resistant to diet-induced weight gain. We previously found that circulating estradiol in females protects their daily rhythms from disruption by high-fat feeding to prevent diet-induced obesity. The goal of this study was to determine the effects of estradiol on daily metabolic rhythms in male mice. Male C57BL/6J mice were treated with estradiol and fed high-fat diet for 2 weeks. We measured the effects of high-fat diet feeding on daily rhythms of eating behavior and locomotor activity, and on the phases, or timing, of circadian rhythms in central and peripheral …

Drinking Microstructure Analysis Of Direct Controls Of Water Intake In Male And Female Rats, Bo W. Sortman, Emalie L. Mullane, Kennedy L. Lamb, Andrea A. Edwards, Ann-Marie Torregrossa, Derek Daniels, Jessica Santollo

Biology Faculty Publications

Measures of rodent drinking (lick) patterns are used to test how various manipulations affect fluid intake. Decades of research indicate that manipulating the satiating potency of a stimulus affects the number of licking bursts whereas manipulating the hedonic value of the solution affects the size of the licking bursts or rate of licking. This type of analysis has been largely applied to manipulations that modulate drinking that is already occurring (i.e., indirect controls or modulators of intake), but there is a dearth of studies with detailed measures of licking due to stimuli that are primary drivers of intake which happen …

The Underappreciated Role Of Rifampin In Shaping The Epidemiology Of Rt027-Like Clostridioides Difficile Lineages, Isabella A. Tickler, Richard V. Goering, Fred Tenover

Biology Faculty Publications

The global emergence and dissemination of epidemic Clostridioides difficile ribotype 027 (RT027) and related lineages illustrate the role of antimicrobial pressure in shaping the epidemiology of this pathogen. We propose a hierarchical model in which fluoroquinolones (FQs) served as the dominant selective force underlying the worldwide expansion of RT027-related strains, with rifampin and rifamycins acting as secondary modifiers that promoted persistence and regional dominance. ©

Data For Forthcoming Article: "Employing Zebrafish To Understand Genetic Drivers Of Epilepsy-Related Comorbid Behaviors", Colleen Carpenter-Swanson

Biology Faculty Publications

Forthcoming from Frontiers in Pharmacology:

"Children with epilepsy frequently experience a range of significant comorbidities beyond seizures, such as motor dysfunction, cognitive impairment, and neurodevelopmental delays. In some cases, these comorbidities contribute more significantly to overall disease burden than the seizures themselves. To improve quality-of-life (QOL) for these children, treatment options should be selected that control seizures and ameliorate comorbidities. Unfortunately, such therapeutics remain largely elusive. Addressing this issue requires suitable preclinical models. Here we used CRISPR-generated zebrafish with single-gene mutations linked to pediatric epilepsy and applied clinically-relevant behavioral assays to study the effects of these mutations. Using high-throughput locomotion-based …

Microbiota Characterization Of Zostera Marina Seeds At Early Stage Development, Gina Chaput, Torrie Hanley, Jonathan A. Eisen, E. Maggie Sogin, A. Randall Hughes, Cynthia G. Hays

Biology Faculty Publications

Understanding seagrass seed microbiomes is crucial for developing microbial-mediated methods to improve germination in restoration efforts. Here, we used 16S rRNA gene and ITS2 amplicon sequencing to characterize the bacterial and fungal communities of seeds from the model seagrass, Zostera marina.

A Genetic Interaction Between Ded1 And Hat1 In Saccharomyces Cerevisiae Reveals A Role For Hat1p In Cytoplasmic Rna Granule Accumulation, Audrey J. Panko, Aidan Winters, Nicholas R. Rothbard, Angela K. Hilliker

Biology Faculty Publications

Ded1p is an essential translation initiation factor that interacts with and is modulated by eIF4F. Ded1p also promotes the assembly and disassembly of stress granules, which contain nontranslating mRNAs and translation initiation factors. As Ded1p affects both mRNA storage and translation initiation, regulation of Ded1p's function may affect whether mRNAs are translated or localized to cytoplasmic RNA granules. To identify regulators of Ded1p in Saccharomyces cerevisiae, we screened for overexpression suppressors of the severe growth defect conferred by high levels of Ded1p. We found that overexpression of HAT1, a lysine acetyltransferase, can suppress the growth defect conferred by …

Warmer Temperatures Increase Egg Laying And Egg Hatching Frequency In The Invasive Freshwater Snail Physa Gyrina From Pennsylvania, Usa, Peter Fong, Morgan Nieman

Biology Faculty Publications

Climate change continues to impact populations of organisms and to affect physiological adaptations to their environments. Freshwater snails have been so impacted globally, not only by climate change, but by the concomitant exposure to environmental pollutants like human antidepressants released from wastewater treatment plants. To test the effect of climate change and antidepressants, we exposed the freshwater snail, Physa gyrina to three temperatures (12 °C, 20 °C, and 25 °C) and to a concentration of the antidepressant fluoxetine, known to modulate snail behavior, and measured time to egg laying and egg hatching. Snails exposed to 20 °C and 25 °C …

Longitudinal Trapping Reveals Differences In Small Mammal Diversity And Community Composition Between Agriculture And Shortgrass Prairie, Trevor Pellerite, Han Li

Biology Faculty Publications

Grasslands in the Great Plains face threats such as agriculture conversion, yet the long-term impacts of this shift on small mammal communities remain underexplored. Using a decade of trapping data from the National Ecological Observatory Network (NEON), we compared small mammal diversity and community composition between a native shortgrass prairie site and an active agricultural site in Colorado, United States. We found no significant difference in species richness between the two habitats; however, the shortgrass prairie exhibited significantly higher diversity. Community composition diverged substantially between sites. The prairie site was characterized by species such as Perognathus flavus, Reithrodontomys megalotis …

A Fine Lady And Excellent Field Botanist: Sister Remberta Westkaemper, O.S.B., Stephen G. Saupe

Biology Faculty Publications

This report provides a brief biography of Sister Remberta and an overview of her botanical activities

The Genome Sequence Of The Hemlock Woolly Adelgid, Adelges Tsugae Annand 1924, Bryan M.T. Brunet, Dustin T. Dial, Gaelen R. Burke, Carol D. Von Dohlen, Julia Douglas Freitas, Haley Sanderson, Afiya R. Chida, Samantha J. Jones, Fergal J. Martin, Leanne Haggerty, Stephen W. Scherer, Ioannis Ragoussis, Steven J.M. Jones, Robert G. Foottit, Nathan P. Havill

Biology Faculty Publications

The genome of the hemlock woolly adelgid (Adelges tsugae) is presented in 10 chromosomal pseudomolecules along with 132 unplaced scaffolds for a combined length of 216.56 Mb. The genome is highly contiguous with an N50 of 20.54 Mb and its longest scaffold 37.41 Mb in length. The assembly recovered 97.7% of benchmarked universal single-copy Hemiptera orthologs (BUSCO) with an overall completion score of 98.6%. On the basis of chromosomal synteny with other aphid genomes, the hemlock woolly adelgid’s genome is composed of eight autosomes and two sex (X) chromosomes. Annotation of the assembly identified 11,800 coding genes, 1,930 …

A Preliminary, Photography-Based Assessment Of Bee Diversity At The Finca Botánica Organic Farm In The Central Pacific Coast Of Ecuador, Joseph S. Wilson, Tyler M. Wilson, Chris Packer, Orlando Pacheco

Biology Faculty Publications

Understanding wild bee diversity is critical for pollinator conservation, particularly in understudied tropical regions like coastal Ecuador. This preliminary study provides a photography-based assessment of bee diversity at Finca Botánica, an organic and regenerative farm on Ecuador’s central Pacific coast. Over a 10-day survey in December 2024, researchers documented 51 bee species across four families, with Apidae being the most represented. The study highlights a predominance of solitary, ground-nesting bees and a lower-than-expected diversity of Meliponini (stingless bees) and Euglossini (orchid bees) compared to other regions of Ecuador. Many species were found in forest patches, ecological corridors, and cover-cropped maize …

Cells Stably Expressing Shrna Against Myo10 Display Altered Cell Motility, Joanna A. Mas, Chase E. Cristella, Vu Hao M. N. Phan, Lillian S. Wendt, Charlotte A. Rose, Abigail Ali, David F. Carpio, Christine Cole, Paige Embley, Jack E. Hoskins-Harris, Delia Johnson, Noelle Ledoux, Hannah W. Lwin, Sarah Salah, Erin Weisbart, Stacey J. Criswell, Omar A. Quintero-Carmona

Biology Faculty Publications

Myosin-X (MYO10) is an actin-based motor protein involved in cytoskeletal dynamics, membrane interactions, and integrin-mediated adhesion. To investigate MYO10's cellular roles, we generated MYO10 knockdown (MYO10KD) HeLa and COS7 cell lines using lentiviral shRNA. Compared to wild-type cells, both MYO10KD lines showed reduced proliferation and impaired cell migration in wound assays. Additionally, there were fewer edge filopodia in HeLa cells. Furthermore, MYO10KD cells demonstrated increased spreading on laminin-coated substrates, suggesting altered integrin activation and cytoskeletal linkage. Our results reinforce MYO10’s importance in cell proliferation, adhesion, and migration. These MYO10KD lines provide an accessible cell culture model for future study of …

Life-History Stage-Dependent Effects Of Food Supplementation On Gut Microbiome Diversity In Sialia Sialis (Eastern Bluebird), Marcella D. Baiz, Allison Cornell

Biology Faculty Publications

Diet can be an important health factor that links fitness to an individual’s ecology. The gut microbiome responds to diet changes and plays an important role in host physiology. Dietary interventions are known to impact gut microbiome composition, but long-term effects and to what extent these impacts vary among individuals at different life-history stages are unclear. To address this question, we performed a supplemental feeding experiment by providing live mealworms (Tenebrio molitor) to Sialia sialis (Eastern Bluebird) during the chick-rearing period. We produced 16S metabarcoding data to quantify gut microbiome diversity from fecal samples of adults and nestlings …

Protocol For Vibratome Sectioning, Immunofluorescence, And S-Phase Labeling Of Inner Ear Organoids, Jiayi Wu, Stefan Heller, Maggie S. Matern

Biology Faculty Publications

Inner ear organoids represent a potentially inexhaustible source of otic tissues, including sensory hair cells and supporting cells, for in vitro manipulation. Here, we present a protocol for labeling S-phase entry of cells in inner ear organoids using 5-ethynyl-2′-deoxyuridine (EdU), followed by fixation and vibratome sectioning. Nuclear EdU is then detected alongside protein markers of interest via immunofluorescence. This workflow enables the visualization of cell and tissue morphologies within developing organoids and assessment of how different manipulations affect cell proliferation.

Pollination And Essential Oil Production Of Lavandula Angustifolia Mill. (Lamiaceae), Riley B. Jackson, Tyler M. Wilson, Joseph S. Wilson, Zabrina Ruggles, Lindsey Topham Wilson, Chris Packer, Jacob G. Young, Christopher R. Bowerbank, Richard E. Carlson

Biology Faculty Publications

Lavandula angustifolia Mill., lavender, is an aromatic plant in the Lamiaceae family. Lavender, which is native to the Mediterranean region but cultivated throughout the world, is an important economic plant. Several studies have investigated two aspects of this aromatic plant: (1) which pollinators, particularly bees, pollinate lavender, and (2) the composition of lavender essential oil. However, little research has been conducted to investigate how pollination affects either the yield or phytochemistry of lavender. The current study, which was conducted in North America, investigates which bee species visit lavender and how pollination affects plant chemistry, specifically the essential oil produced by …

The Role Of Vibration Amplitude In The Escape-Hatching Response Of Red-Eyed Treefrog Embryos, Julie Jung, Michael S. Caldwell, Gregrory Mcdaniel, Karen Warkentin

Biology Faculty Publications

Red-eyed treefrogs hatch early when attacked by snake or wasp egg predators. They use vibrations generated by attacks to identify these threats but other, harmless environmental disturbances also produce strong vibrations within egg clutches. This study examines the complex ways embryos use vibrations amplitude information to ensure they hatch only when a real threat is present.

Comparative Mechanical And Elastic Properties Of The Dorsal And Ventral Tendons In The Peduncle Of Harbor Porpoise (Phocoena Phocoena), Alexa R. Cesari, Jesse K. Placone, Nicole L. Ramo, Michael V. Rosario, Matthew Morris, Danielle S. Adams, Frank E. Fish

Biology Faculty Publications

Cetaceans swim via vertical movements of the tail. The tendons located in the caudal peduncle are attached to the caudal vertebrae to generate propulsive oscillations. Arguments have centered on whether the upstrokes and downstrokes of the tail and propulsive flukes are symmetrical or asymmetrical in time. Previous research from kinematics of swimming animals, muscle architecture and histology has supported both conditions. However, the composition and structure of the tendons suggest a potential mechanism to evaluate this disparity. In this study, the tendons of the caudal peduncle of the harbor porpoise (Phocoena phocoena) – specifically, the extensor caudae medialis …

Environmental Conditions Explain Variability In Concentrations Of Nutrients But Not Emerging Contaminants, Megan L. Fork, Jerker Fick, Alexander J. Reisinger, Peter M. Groffman, Emma J. Rosi

Biology Faculty Publications

Aquatic ecosystems are subjected to many chemical stressors, including nutrients and emerging contaminants like pharmaceuticals. While pharmaceutical concentrations in streams and rivers are often below the thresholds for acute toxicity, they nonetheless disrupt ecology through changes to organisms’ physiology, metabolism, and behavior. However, analyzing samples for the wide range of manufactured pharmaceuticals is often prohibitively expensive for many monitoring efforts. As such, the ability to predict pharmaceutical concentrations over space and time using easier-to-monitor water quality parameters would expand our understanding of the scope and consequences of pharmaceutical contamination in aquatic ecosystems. We applied random forest models to data from …

A Checklist Of The Bees Of Utah, Joseph S. Wilson, Anthony Hunsaker, Terry L. Griswold, Olivia Messinger Carril

Biology Faculty Publications

Understanding bee distributions is essential to protecting these vital pollinators. Since conservation efforts and policies are often made at the state level, maintaining state-specific bee species lists can aid conservationists and policy makers. While several North American state- and province-level bee species lists have been published, few exist for the arid western states, where bee diversity tends to be higher. Here we provide a bee species list for Utah, compiled from online occurrence records from the Symbiota Collection of Arthropods Network (SCAN) and specimen records housed in the USDA-ARS Pollinating Insect Research Unit (BBSL). In total we document 1167 bee …

Nutrient Limitation And Seasonality Associated With Phytoplankton Communities And Cyanotoxin Production In A Large, Hypereutrophic Lake, Gabriella M. Lawson, Jakob L. Young, Zachary T. Aanderud, Erin F. Jones, Samuel Bratsman, Jonathan Daniels, Madeleine P. Malmfeldt, Michelle A. Baker, Benjamin W. Abbott, Scott Daly, Hans W. Paerl, Greg Carling, Brian Brown, Raymond Lee, Rachel L. Wood

Biology Faculty Publications

Though freshwater harmful algal blooms have been described and studied for decades, several important dynamics remain uncertain, including the relationships among nutrient concentrations, phytoplankton growth, and cyanotoxin production. To identify when and where nutrients limit phytoplankton, cyanobacteria, and cyanotoxins, we conducted in situ bioassay studies. We added nitrogen (N), phosphorus (P), or N + P across various seasons in water collected from three locations across Utah Lake, one of the largest freshwater lakes in the western U.S. This shallow, hypereutrophic lake provides a powerful testbed for quantifying nutrient-growthtoxin interactions. We assessed a range of parameters over time, including photopigment concentrations, …

Brain Transcriptomics Of A Social Challenge And Maternal Aggression In Incubating Female Tree Swallows, Emily J. Levy, Elizabeth M. George, Douglas B. Rusch, Aaron Buechlein, Kimberly A. Rosvall

Biology Faculty Publications

Aggressive behavior is ubiquitous across many contexts, including defense of territories, mates, and offspring. For decades, researchers have detailed the effect of aggressive behavior on physiology, but our understanding of these mechanisms in females lags behind that of males, despite the fact that female aggression is widespread, particularly in the context of maternal defense of eggs or offspring (i.e., maternal aggression). Here, we measured effects of a social challenge on brain gene expression in free-living incubating females. We hypothesized that the social challenge would generate at least one of three transcriptomic effects: (1) sensitizing the brain to otherwise low levels …