Physics Commons^™

Magnetic Properties And Ultrafast Spin Dynamics In Quantum Materials, Trung Kien Mac

All Graduate Theses and Dissertations, Fall 2023 to Present

Modern electronics mostly work by moving electric charge, which generates heat and hence wastes energy, especially as devices become smaller and faster. An alternative is to use the spin of electrons (a tiny magnetic property) and related “valley” states in certain atomically thin materials to store and process information more efficiently. This thesis explores how magnetism and spin behavior can be created and measured in a family of ultra-thin materials known as van der Waals quantum materials. Three kinds of materials are studied. First, atomically thin semiconductors are shaped into narrow nanoribbons. Because of their narrow size, their edges can …

The Role Of Local Winds And A Semi-Persistent Coastal Front On The Diurnal Heat Budget In An Upwelling Bay, April P. Thibodeau, Ryan K. Walter, Piero L.F. Mazzini, Thomas P. Connolly, Christopher A. Edwards, Ian C. Robbins

Physics

Coastal embayments in nearshore upwelling systems (“upwelling bays”) play a disproportionately large role in regional oceanography. In these systems, local diurnal wind forcing and thermal gradients associated with an upwelling shadow front that forms between warmer sheltered waters inside the bay and colder recently upwelled waters outside the bay strongly influence local temperature dynamics. Despite their importance to local ecosystems, there are no long-term studies that assess the heat budget inside upwelling bays. In this study, we analyzed approximately two years of water temperature throughout the water column using an autonomous profiler in a small upwelling bay in central California …

Mining Time Series Shapelets And Association Rules For Solar Flare Prediction, Drew Watson

All Graduate Theses and Dissertations, Fall 2023 to Present

Solar flares are the largest explosions in the solar system; they are caused by changes in the Sun’s magnetic field. Strong solar flares can disrupt power systems, damage satellites, and interfere with radio communication, so improving flare prediction is important. This thesis develops a way to predict severe solar flares while also helping researchers understand why those predictions are made. The approach looks for short patterns in solar magnetic field data that are linked to future flare activity. It then studies how these patterns appear together and in what order they happen over time. By doing this, the research not …

Hidden Symmetries And Higher Dimensional Rotating Black Holes, Luis Fernando Temoche Hurtado

All Graduate Theses and Dissertations, Fall 2023 to Present

A standard approach to probing the dynamics of a physical system is to expose it to an external perturbation—such as an incident wave—and analyze its response after the interaction. Mathematically, this procedure is formulated in terms of differential equations governing the evolution of the perturbation.

In the context of black hole physics, an analogous strategy can be employed by studying the response of the event horizon to external perturbations. The differential equations describing these interactions are often invariant under nontrivial transformations, revealing hidden symmetries that help explain distinctive features of higher-dimensional black holes.

By exploiting these hidden symmetries in the …

Ai-Driven Segmentation And Volumetric Response Modeling Of Liver Regions To Radiotherapy, Aashish Chandra Gupta

Dissertations and Theses (Open Access)

In liver-directed radiotherapy (RT), liver regions receiving higher doses typically undergo atrophy while contralateral/adjacent lower-dose regions may exhibit compensatory hypertrophy through regeneration of healthy tissue. Optimizing the RT plan to promote regional hypertrophy while minimizing the risk of developing atrophy has the potential to enhance post-RT liver function and long-term survivorship. However, current clinical practice largely relies on global liver dose-volume metrics during RT-planning, which may obscure favorable dose-response correlation and limit actionable guidance for clinicians. Therefore, we hypothesized that post-RT regional liver response is governed by a combination of region-specific dose-volume and patient clinical features, and that these responses …

Synthesis And Characterization Of Carbon Quantum Dots And Gold Nanoparticles For Norovirus Biosensing Applications In Water Systems, Breanne Evans

Master's Theses

Rapid, reliable detection of viral pathogens remains a significant challenge across water-treatment and environmental monitoring systems, including drinking-water, wastewater, water reuse, and environmental surveillance applications. Waterborne viral contamination can pose substantial public-health risks, making early detection essential for protecting water quality and responding quickly to treatment failures or contamination events. Direct potable reuse (DPR) is one particularly demanding example because it requires continuous verification of treatment performance and the broader need for rapid virus monitoring extends across many water-treatment and environmental surveillance applications. Norovirus is a priority target because of its widespread occurrence in wastewater, environmental persistence, and exceptionally low …

Visualizing The Phase Space Of Two Interacting Spherical Magnets Via Lagrangian Descriptors, Matthew Pontius

All Graduate Theses and Dissertations, Fall 2023 to Present

This thesis studies the motion of one spherical magnet sliding on another fixed spherical magnet. Although the setup is simple, the resulting motion can range from regular and predictable to chaotic as the energy increases. To understand this behavior, mathematical tools are used to visualize how all possible motions are organized in phase space. These methods reveal patterns such as stable regions, repeating motions, and chaotic trajectories. The results show how order and chaos coexist in this system and provide insight into how small changes in the initial conditions can lead to very different outcomes.

Emergent De Sitter Expansion And Closed Topology From The Cosmic Fabric Model As An Open Thermodynamic System: Resolving The Negative Bulk Modulus Paradox, T G. Tenev, C B. Ward, T F. Tenev, M F. Horstemeyer

Faculty Publications and Presentations

The Cosmic Fabric Model establishes a continuum-mechanics isomorphism to General Relativity by representing physical space as an elastic three-dimensional hyperplate embedded in a four-dimensional spatial bulk. Reproducing vacuum kinematics requires a vanishing P-wave modulus, which in turn implies a negative bulk modulus—an apparent thermodynamic instability in a closed system. This paradox is resolved by recasting the framework as an open system: the instability is not pathological but instead drives cosmic expansion. In this interpretation, the observable universe is a lower-energy solid formed through continuous solidification from a higher-dimensional precursor fluid. Using multiplicative kinematics from finite-growth mechanics, the model shows that …

Multiscale Network Modeling Of Native And Modified Photosynthetic Light-Harvesting Complexes, Zane E. Armijo

Chemical and Biological Engineering ETDs

Photosynthetic light-harvesting complexes harvest solar energy and direct electronic excitations toward reaction centers with exceptional efficiency. This dissertation models the Fenna--Matthews--Olson complex of green sulfur bacteria, coupled to the PscA1 reaction center, as a chromophoric network. Forster resonance energy transfer theory, validated against numerically exact hierarchical equations of motion, was implemented in kinetic Monte Carlo simulations to resolve fine-grained excitation-transport pathways. The predicted charge-transfer efficiency of 77\% agrees with experiment, with the FMO2 monomer and its gateway pigment governing interfacial transfer. Systematic single, multi, and symmetry-preserving site removals, interpreted through Mobius inversion, identify critical pigments and show that cooperative effects …

Superresolution Spectroscopy Of Atomically Thin Semiconductors And Moiré Heterostructures, Chien-Chu (Charity) Wei

Master's Theses

Atomically thin semiconductors and moir’e heterostructures provide an important platform for studying quantum phenomena shaped by reduced dimensionality, interlayer coupling, strain, and local structure. In MoS2, the transition from bulk to monolayer form changes the material from an indirect to a direct band gap, while stacked and strain-engineered systems can produce spatially varying moir’e potentials on nanometer length scales. Because these effects are highly localized, conventional far-field optical spectroscopy is often limited in its ability to resolve them directly. This thesis explores superresolution vibrational spectroscopy as a route toward probing local behavior in atomically thin semiconductors and moir’e heterostructures. Far-field …

Diagrammatic Methods For Calculating Correlation Functions In Low-Dimensional Quantum Gravity, Nicholas A. Parrilla

Master's Theses

This thesis investigates connections between random matrix theory and low-dimensional quantum gravity through the spectral form factor (SFF), a well-studied function that characterizes correlations in the eigenvalue spectrum of an operator. In random matrix ensembles, a feature of the SFF known as the “ramp” is governed by universal spectral correlations, and in Jackiw–Teitelboim (JT) gravity this regime is due to the double-trumpet wormhole geometry. We study the connected correlation functions underlying the SFF using combinatorial, diagrammatic methods from a mathematical formalism known as second-order free probability theory, where they are expressed in terms of annular noncrossing permutations. To access a …

Developing And Testing Visualization Simulations For The Gamma-Ray Energy Tracking Array (Greta), Blake Mcnulty

Physics and Astronomy Summer Fellows

GRETA is a recently-completed Department of Energy-funded project to construct an array of 120 gamma-ray detectors for use in nuclear physics experiments. The Gretina Array was the successful pilot project to construct 48 of the eventual 120 detectors that would be used in the array. UCGretina is a program that is used to simulate the GRETA array for the purposes of planning experiments and analyzing measurements. My job for this summer, with the advent of the full GRETA system, was to implement the new modular mounting structure for the full GRETA array in the simulation code. This involves creating the …

Culmination Of The Arts And Stem To Enhance Creativity And Promote Learning, Kaleigh Evans

Physics and Astronomy Summer Fellows

In this work, we investigate the results from a survey, issued to a course in “Stained Glass” (n= 23 students). Major findings include that the introduction of a problem-based learning (PBL) course in the arts of stained glass may support high demand skills such as interdisciplinary conceptual learning as well as soft skills such as scientific confidence, interdisciplinary transfer, and collaborative learnings. A journal paper draft was completed and will be submitted this Fall. This summer, work was also done to establish a guide to modeling and 3D printing to help establish and grow a makerspace on campus for use …

Simulations Of Skyrmions And Merons, Ryan Friesen, Aidan Kirk, Tom Carroll, Xuemei Cheng

Physics and Astronomy Summer Fellows

Skyrmions and merons are particle-like spin structures that are found in specific magnetic materials. Due to their stability and nanoscale size, these quasiparticles have been proposed as promising candidates for qubits in quantum computing applications. Our goal is to design materials that can host and stabilize these quasiparticles. Skyrmions and merons exist only under specific conditions, and the parameter space for these materials is vast. Thus, we use the simulation package MuMax3 to run simulations to test the viability of potential materials to simplify this search. We present on our simulations of these skyrmions and merons. This work was supported …

Glassy Magnetic Freezing Of Interacting Clusters In Materials Related To The Lk-99 Family, Serafim Teknowijoyo, Domenico Napoletani, Vahan Nikoghosyan, Armen Gulian

Mathematics, Physics, and Computer Science Faculty Articles and Research

We report reproducible magnetization anomalies appearing below room temperature in copper-doped apatite materials belonging to the LK-99 family synthesized via hydrothermal methods. These anomalies are observed consistently across samples prepared under comparable conditions. Although the extracted Mydosh parameter lies within the range often associated with vortex-glass behavior in superconductors, a detailed analysis of DC magnetization, AC susceptibility, field dependence, and magnetic memory effects demonstrates that the observed phenomena are not related to superconductivity. Instead, the data are consistent with glassy magnetic freezing of interacting clusters. Compositional and structural analysis identifies covellite (CuS), one of the constituent phases in these multiphase …

Global Time-Resolved Measurements Of Inlet/Isolator Unstart Induced By Mass Injection, Andrew N. Bustard, Benjamin L. Bemis, Aaron Marques, Matthew J. Zahr, Thomas J. Juliano

Publications

The inner surface pressure of an axisymmetric inlet/isolator model was measured using anodized-aluminum pressure-sensitive paint (PSP) viewing through cast acrylic. Temperaturesensitive paint was utilized to correct for the PSP’s temperature sensitivity. The model was tested under Mach 5.7 flow at 𝑹𝒆 = 7.1 ×106 /m under conventional noise conditions. Transverse jet injection with jet-to-inlet mass-flow ratios up to 0.8 was used to induce unstart in the inlet/isolator. Background-oriented schlieren visualization of the inlet shocks was collected simultaneously with the PSP to determine when the inlet unstarted. Computational fluid dynamics results were used to determine off-wall flow structures and quantify approach …

Cytotoxicity Of Bioactive Peptides From Cowpea (Vigna Unguiculata L. Walp) Against Breast Cancer Cells (Mcf-7), Dian R. Ningsih, Zusfahair Zusfahair, Ely Setiawan, Purwati Purwati, Kasta Gurning, Fitri A. Puspita Sari, Elya Widiawati

Karbala International Journal of Modern Science

Cancer is characterized by dysregulated metabolic signaling pathways, leading to uncontrolled cellular proliferation. Current cancer treatments, which involve surgery, radiotherapy, and chemotherapy, still cause adverse systemic toxicities. Accordingly, one possible effort that can be undertaken is to explore safe anticancer substances from protein sources such as peptides. Bioactive peptides can be isolated by hydrolyzing cowpea (Vigna unguiculata L. Walp) protein with trypsin. The objectives of this study were to isolate and fractionate bioactive peptides from cowpea, to determine the anticancer activity of peptide fractions, to identify active peptide fractions as anticancer agents using Liquid Chromatography High Resolution Mass Spectrometry …

Exogenous Ribosome Incorporation Induces Lineage Transdifferentiation In Intestinal And Liver Cancer Cells, Haoxuan Gu, Nadia Wahyuningsih, Keisuke Yamashita, Shota Inoue, Fuchao Tan, Mani Sharaki, Muhaimin Rifa’I, Kunimasa Ohta

Karbala International Journal of Modern Science

It has previously been shown that exogenous bacterial ribosomes added to somatic cells and various cancer cell lines generate ribosome-induced cell clusters (RICs) capable of transdifferentiating into multiple cellular lineages. However, the scope of ribosome-induced transdifferentiation in cancer cells remains poorly understood. This study aimed to analyze the effects of exogenous ribosome incorporation on human cancer cell lines, specifically the intestinal epithelial cell line Caco-2 and the hepatocellular carcinoma cell line HepG2. Caco-2 and HepG2 cells were cultured with purified bacterial ribosomes in human ES/iPS cell medium after trypsinization, resulting in the formation of ribosome-induced Caco-2 (RICs-Ca) and HepG2 (RICs-He) …

Tapping Into The Ocean’S Hidden Energy: Feasibility Of A 5 Mw Otec Installation In North Bali, Widodo Setiyo Pranowo, Yani Permanawati, Gisela Malya Asoka Anindita, Agung Kurniawan, Albertus Sulaiman, Johar Setiyadi, Safri Burhanuddin, Ivonne Milichristi Radjawane, Hansan Park, Endro Sigit Kurniawan

Karbala International Journal of Modern Science

Indonesia is an archipelagic country surrounded by water and faces energy challenges due to the low use of renewable energy. Among the potential renewable options, marine energy is a particularly suitable resource given the country’s geographical nature. Based on this discussion, seawater temperature can be used as an alternative ocean thermal en-ergy known as ocean thermal energy conversion (OTEC) by using the difference in sea surface and deep-sea water temperatures. Therefore, this study aimed to examine OTEC installations in North Bali waters using closed-cycle OTEC calculations for a 5 MW system. Following this objective, we examined the water conditions by …

Deciphering The Potential Of Monopterus Albus Protein Hydrolysate As A Therapeutic Candidate Against Cervical Cancer By Integrating Content Analysis, Network Pharmacology, And Molecular Docking, Okid Parama Astirin, Widya Mega Rahmawati, Elisa Herawati, Tetri Widiyani, Lili Pandan Sari, Sherly Octaviana

Karbala International Journal of Modern Science

Cervical cancer has a high incidence rate in women, making the development of cancer drugs increasingly urgent. Asian swamp eel protein hydrolysate shows great promise as an anticancer candidate. This study aimed to reveal the potential of Asian swamp eel protein hydrolysate as an anticancer candidate in the cervix. Asian swamp eel protein hydrolysate was produced by hydrolyzing flesh with the enzyme alcalase. Compounds and peptides were identified using LC-HRMS. These compounds and peptides were analyzed using network pharmacology, gene ontology, and molecular docking. The results identified 153 endogenous compounds, including fatty acids and peptides. The key proteins targeted by …

Crystal Structural Analysis Of Medieval Human Bones Using Wide-Angle X-Ray Scattering, Selly Altangerel, Leslie Gracia

DePaul Discoveries

Female human second metacarpal (mc2) bones from a medieval cemetery at Wharram Percy, England, were studied using high-energy Wide-Angle X-ray Scattering (WAXS) at beamline 1-ID of the Advanced Photon Source at Argonne National Laboratory. The age-at-death of 33 samples was determined from molar wear and classified into 3 groups:  18-30, 30-50, and 50+ years old.  Rietveld refinements of the WAXS data were performed to obtain lattice parameters of the hexagonal carbonated apatite phase (cAp). Individual fittings for cAp peaks 00.2, 00.4, and 31.0 were performed to obtain their widths and correlate them to collagen retention. For the three samples described …

Capturing An Electron In The Virtual State, Alok Nath Singh, Bibek Bhandari, Rafael Sánchez, Andrew N. Jordan

Mathematics, Physics, and Computer Science Faculty Articles and Research

We address a foundational question in quantum mechanics: can a particle be directly found in a classically-forbidden virtual state? We instantiate this conceptual question by investigating the traversal of electrons through a tunnel barrier, which we define in a triple quantum dot system where the occupation of the central dot is energetically avoided. The motivation behind this setup is to answer whether the central dot is occupied or not during a virtual transition when it is being explicitly monitored. We investigate this problem in two different limits of continuous measurements: the stochastic quantum diffusion and the quantum jump. We find …

Narrowband Searches For Continuous Gravitational Waves From Known Pulsars In The First Two Parts Of The Fourth Ligo–Virgo–Kagra Observing Run, A. G. Abac, I. Abouelfettouh, Teviet Creighton, Mario C. Diaz, Raul Alberto Espinosa Perez, J. Lawrence, Francisco Llamas Villarreal, Miriam Ramos Arevalo, Soma Mukherjee, Gaukhar Nurbek, Volker Quetschke, Wenhui Wang

Physics & Astronomy Faculty Publications

Rotating nonaxisymmetric neutron stars (NSs) are promising sources for continuous gravitational waves (CWs). CWs may, if detected, inform us about the internal structure and equation of state of NSs. Here, we present a narrowband search for CWs from known pulsars, for which a matched-filter search can be applied. Narrowband searches are robust to mismatches between electromagnetic (EM) and gravitational emissions, in contrast to fully targeted searches where they are assumed to be phase-locked. In this work, we search for the CW counterparts emitted by 34 pulsars using data from the first and second parts of the fourth LIGO–Virgo–KAGRA observing run. …

Gwtc-4.0: Population Properties Of Merging Compact Binaries, A. G. Abac, I. Abouelfettouh, Teviet Creighton, Mario C. Diaz, Raul Alberto Espinosa Perez, J Lawrence, Francisco Llamas Villarreal, Soma Mukherjee, Volker Quetschke, Wenhui Wang

Physics & Astronomy Faculty Publications

We detail the population properties of binary neutron star, neutron star–black hole binary, and binary black hole mergers using 158 events from the cumulative Gravitational-Wave Transient Catalog 4.0. The black hole primary mass distribution consists of a power-law-like continuum that steepens above 35 M⊙ with overdensities at 10 M⊙ and 35 M⊙. Binary black holes with primary masses near 10 M⊙ are more likely to have less massive secondaries, with a mass ratio distribution peaking at  q=0.74+0.13−0.13, potentially a signature of stable mass transfer during binary evolution. Black hole spins are inferred to be nonextremal, with …

Detecting And Correcting Systematic Image Distortion In Digital Atomic-Resolution Images From Crystals: Projected Symmetry Of Graphite Calibration Samples For Scanning Prove Microscopy And Subperiodic Crystals For Aberration-Corrected Transmission Electron Microscopy, Tyler Michael Bortel

Dissertations and Theses

Though it is an impressive technology, Scanning Tunneling Microscopy (STM) produces images commonly plagued by small systematic errors, often called "drift". These effects have a variety of causes, most notably nonlinear behavior of piezoelectric actuator tubes responsible for the positioning of the scanning probe or sample. One result of these distortions is a potential incorrect classification of the symmetry groups and projected Laue classes of recorded images from crystals—made possible by using recently developed objective methods. An implementation of a known method for detecting and correcting these errors is presented. This method operates strictly in Fourier space so as to …

Coherent Two-Photon Backscattering And Induced Angular Quantum Correlations In Multiple-Scattered Two-Photon States Of The Light, Nooshin M. Estakhri, Theodore B. Norris

Engineering Faculty Articles and Research

We present the emergence of coherent two-photon backscattering, a manifestation of weak localization, in multiple scattering of maximally entangled pure and fully mixed two-photon states and examine the effect of entanglement and classical correlations. Quantum correlations in backscattering are investigated for finite three-dimensional disordered structures in the weak localization regime, as well as systems of a small number of scatterers with specified spatial arrangements. No assumptions are made about the statistical behavior of the scattering matrix elements. Furthermore, we study the interplay between quantum correlations induced by multiple scattering and the correlations that may be present in the illumination fields, …

Real-Time Image Denoising And Reconstruction Using Generative Adversarial Networks (Gans), Roa'a M. Al_Airaji, Haider Th. Salim Alrikabi, Rula Kamil, Svyd Iryna

Karbala International Journal of Modern Science

This paper presents a real-time image denoising and reconstruction system based on a compact Generative Adversarial Network (GAN) designed for embedded systems and edge computing. The proposed model employs a [ generator and a PatchGAN discriminator, trained using hybrid loss function that combines L1, perceptual, and adversarial terms to balance pixel and perceptual realism. Evaluations were conducted on multiple datasets, including DIV2K, BSD68, SIDD, DND, RENOIR, and PolyU at noise levels (σ = 15, 25, 50). Quantitatively, the proposed model achieves an average PSNR of 32.8 dB and an SSIM of 0.88, which is higher by more than 3 dB …

Interfacial Redox Mediation By Amine/Alkyne-Functionalized Silicon Nanoparticles: Surfactant-Free Gold Nanoparticle Synthesis, Amber L. Garcia, Brittany Griggs, Brian S. Mitchell, Mark J. Fink, Julie P. Vanegas

Physics & Astronomy Faculty Publications

We develop a surfactant-free synthesis method for gold nanoparticles (AuNPs) using 2-propynylamine-functionalized silicon nanoparticles as integrated redox-active supports. Surface-anchored amine groups act as built-in reducing sites for Au³⁺ precursors at the hexane–water interface under ambient conditions, enabling in situ AuNP nucleation and growth. Time-resolved UV-vis spectroscopy and dynamic light scattering track the emergence of plasmonic AuNPs, while quantitative morphology analysis reveals a final population dominated by spherical and near-spherical nanoparticles (∼74%), with faceted polyhedral structures (∼4%) and dendritic, hollow, irregular, and rod-like morphologies (∼22%) as minority species. The temporal evolution proceeds from early dendritic and irregular aggregates to a …

Constraints On Gravitational Waves From The 2024 Vela Pulsar Glitch, A. G. Abac, I. Abouelfettouh, Teviet Creighton, Mario C. Diaz, Raul Alberto Espinosa Perez, J. Lawrence, Francisco Llamas Villarreal, Soma Mukherjee, Volker Quetschke, Miriam Ramos Arevalo, Wenhui Wang

Physics & Astronomy Faculty Publications

Among known neutron stars, the Vela pulsar is one of the best targets for gravitational-wave searches. It is also one of the most prolific in terms of glitches, which are sudden frequency changes in a pulsar’s rotation. Such glitches could cause a variety of transient gravitational-wave signals. Here, we search for signals associated with a Vela glitch on 2024 April 29 in data of the two LIGO detectors from the fourth LIGO–Virgo–KAGRA observing run. We search both for seconds-scale burst-like emission, primarily from fundamental (f-)mode oscillations, and for longer quasi-monochromatic transients up to 4 months in duration, primarily …

On The True Interstellar Anisotropy Of Tev Cosmic Rays And Its Implications For The Local Interstellar Medium, Noufel D. Maalal

Theses and Dissertations

Several ground-based cosmic ray (CR) air shower experiments have produced sky maps of intensity anisotropy in the energy range from 1 TeV to a few hundred TeVs with very high statistics and angular resolution. These measurements provide opportunities to study CR sources and propagation in the interstellar medium (ISM). Such studies present two major difficulties. Firstly, CRs are deflected by the heliospheric magnetic field on the last stretch of their journey to Earth. Secondly, measurements at different latitudes are difficult to compare, leading to uncertainties in latitudinal variations on the order of the observed anisotropy. Experiments usually assume latitudinal variations …