Physics Commons^™

Multiscale Network Modeling Of Native And Modified Photosynthetic Light-Harvesting Complexes, Zane E. Armijo

Chemical and Biological Engineering ETDs

Photosynthetic light-harvesting complexes harvest solar energy and direct electronic excitations toward reaction centers with exceptional efficiency. This dissertation models the Fenna--Matthews--Olson complex of green sulfur bacteria, coupled to the PscA1 reaction center, as a chromophoric network. Forster resonance energy transfer theory, validated against numerically exact hierarchical equations of motion, was implemented in kinetic Monte Carlo simulations to resolve fine-grained excitation-transport pathways. The predicted charge-transfer efficiency of 77\% agrees with experiment, with the FMO2 monomer and its gateway pigment governing interfacial transfer. Systematic single, multi, and symmetry-preserving site removals, interpreted through Mobius inversion, identify critical pigments and show that cooperative effects …

A Quantum Phase Space Description Of Local Noise In Atomic Ensembles, Andrew Kolmer Forbes

Physics & Astronomy ETDs

Nonclassicality in quantum sensors can improve sensitivity, but often increases susceptibility to noise. Thus, modeling physically relevant noise sources and analyzing their effect on quantum metrology are both of importance to the field of quantum sensing. In this dissertation, I demonstrate that local noise sources, which are present in almost all many-spin systems, can be tractably modeled when assuming permutation symmetry of the noise, and we show that many common local noise sources can be mapped to a Fokker-Planck equation on quantum phase space. We apply this description of noise to study quantum sensing using noisy probe states and establish …

Optical Nuclear Spin Detection In Diamond And Varifocal Metasurface Optics, Maxwell D. Aiello

Physics & Astronomy ETDs

This dissertation presents two experimental investigations at the intersection of quantum sensing and precision optical instrumentation. The primary project demonstrates optically detected nuclear magnetic resonance (NMR) of ¹³C nuclear spins in diamond, using state-selective Landau-Zener transitions under microwave frequency sweeping to bidirectionally transfer spin polarization between nitrogen-vacancy (NV) electron spins and remote ¹³C nuclear spins. This enables optical polarization and readout of large ensembles of polarized nuclear spins at low magnetic fields and room temperature, with spin dephasing times limited by longitudinal relaxation of nearby NV electron spins. The secondary project reports the design, fabrication, and characterization of …

Quantum Control Protocols For Robust Quantum Computing, Leeseok Kim

Electrical and Computer Engineering ETDs

The fundamental goal of quantum computing is to precisely control quantum systems to perform meaningful tasks, including implementing high-fidelity quantum gates for reliable quantum computation and accurately simulating complex quantum many- body dynamics. In this dissertation, we develop improved quantum control protocols for three distinct objectives, quantum error suppression, quantum optimal control, and analog quantum algorithms, achieving performance beyond standard approaches. First, we introduce new dynamical decoupling protocols, including both determin- istic and randomized constructions, that can substantially outperform conventional deterministic sequences. We then extend the randomized approach to dynamically corrected gates. Second, we propose a randomized quantum optimal control …

Design, Fabrication, And Characterization Of Silicon Nitride Microresonator Optical Frequency Combs, Lala Rukh

Optical Science and Engineering ETDs

Optical frequency combs consist of equidistant optical frequencies and have numerous applications ranging from optical metrology to medical diagnostics. Initially, frequency combs were based on bulky mode-locked lasers, but advancements in integrated photonics enabled the generation of frequency combs in chip-scale resonators (microcombs) using Kerr nonlinearity. These miniaturized systems present various challenges, including increased propagation losses, enhanced thermal effects, and the extension of microcombs to visible wavelengths. In this dissertation, I will focus on addressing these challenges in silicon nitride (SiN) resonators. First, this thesis focuses on the fabrication of high-Q SiN resonators and the impact of fabrication parameters on …

Realizing The Long Wavelength Array Swarm, Craig Anthony Taylor

Physics & Astronomy ETDs

Sensitive modern radio interferometers are costly to build and operate at the university level. The `swarm telescope' concept addresses this challenge by enabling the collaborative use of individual telescope systems, overseen by separate institutions, that come together to form a more powerful and manageable facility. This dissertation focuses on demonstrating this concept using the Long Wavelength Array (LWA) by commissioning an aperture synthesis telescope consisting of interconnected LWA stations, called the LWA Swarm. The presented work details building a cost-efficient prototype LWA platform -- the LWA--North Arm station -- to enable synthesis imaging using the 3-element interferometer comprised of LWA1, …

A Multi-Frequency Investigation Of Compact Symmetric Objects, Evan E. Sheldahl

Physics & Astronomy ETDs

Some of the brightest objects in the radio sky are jetted active galactic nuclei (AGN), supermassive black holes in the centers of galaxies that accelerate relativistic electrons into twin radio jets. One of the biggest questions surrounding AGN is how they produce radio jets in the first place. We search for an answer to this question by exploring a class of AGN that have uniquely well-constrained physical properties and are thought to be in an early stage of AGN development: compact symmetric objects (CSOs). Throughout our journey with these remarkable sources, we quantify their efficacy as calibrator sources for radio …

Exploratory Study Of Semiconductor Nanomembranes In Em Applications, Grant D. Heileman

Electrical and Computer Engineering ETDs

Antenna systems are a cornerstone of modern technologies, playing an increasingly vital role in their advancement. As demand for compact, high-performance, and adaptable communication platforms grows reconfigurable antenna technologies are becoming essential. This research explores a novel front-end reconfigurable antenna system (FERAS) architecture that leverages the mechanical flexibility and photoconductive behavior of semiconductor nanomembrane (SNM) devices. By exploiting the emergent properties of ultra-thin silicon (Si) or gallium arsenide (GaAs) nanomaterials and optically exciting these samples using vertical-cavity surface-emitting laser (VCSEL) arrays, this study develops lightweight, low-cost, deployable antenna structures for satellite communications, remote sensing, GPS, and radar. Despite their significant …

Full-Stack Quantum Computing, Benjamin C A Morrison

Physics & Astronomy ETDs

Quantum computing is a promising tool for solving computational problems in several areas, including the simulation of physical and chemical systems. The design of practical quantum computing systems for these applications is a daunting task, requiring collaborative work by interdisciplinary teams considering different abstractions of the same systems. This dissertation presents work on the development of those abstractions, and on components that bridge multiple layers of abstraction. I first provide an introduction to quantum circuit model computation, error correction with stabilizer codes, and physics simulation algorithms. In joint work with the QSCOUT software team, I then describe the development of …

Volumetric Imaging Of Cellular Dynamics Using Light-Sheet Microscopy: From Subcellular Structures To Whole Organisms, Md Nasful Huda Prince

Optical Science and Engineering ETDs

Advancing biomedical imaging requires platforms that combine high-resolution, speed, and stability across biological scales. This dissertation presents three innovations designed to address limitations of conventional light-sheet and oblique plane imaging. First, we introduce Reflected Inline Detection in Epi-Oblique Plane Microscopy (RIDE-OPM), a compact and drift-resistant system that eliminates a tertiary detection path while maintaining alignment flexibility, enabling robust long-term live imaging. Second, we present a high-speed Axially Swept Light-Sheet Microscopy (ASLM) platform for cleared tissues, using dual foci and synchronized sweeping to achieve isotropic sub-micron resolution at up to 40 frames-per-second, a fourfold improvement over standard ASLM. Integrated with a …

Algebraic Multigrid Methods For Nonsymmetric And Indefinite Problems: Theory And Applications, Ahsan Ali

Mathematics & Statistics ETDs

Algebraic multigrid (AMG) is a well-established and highly efficient solver for symmetric positive definite (SPD) systems arising from elliptic and parabolic PDEs, while nonsymmetric systems from hyperbolic PDEs remain a significant challenge. This dissertation develops AMG methods and theory for nonsymmetric problems. First, we develop a novel approach combining mode constraints from energy-minimization AMG with local approximations of ideal restriction in $\ell$AIR, resulting in constrained $\ell$AIR (C$\ell$AIR), which demonstrates scalable convergence across advective and diffusive problems. Second, we extend optimal AMG theory by deriving spectral radius estimates for the two-grid error transfer operator using matrix-induced orthogonality, enabling convergence predictions for …

A Systematic Approach To The Characterization Of Liquid-Vapor Coexistence In Platinum, Meghan K. Lentz

Physics & Astronomy ETDs

Platinum is a material standard used in high pressure and shock compression experiments at Sandia National Laboratories. During experiments, materials are subjected to a very large range of thermodynamic conditions, during which materials regularly enter the liquid-vapor coexistence region. Despite its status as a standard, the region around the liquid-vapor critical point is poorly understood for platinum, with reported critical temperatures spanning approximately 7000 K. In this dissertation we conduct density functional theory based molecular dynamics (DFTMD) simulations for platinum for a range of temperatures and densities near liquid-vapor coexistence. The phase diagram for platinum is refined near the critical …

Phase Nanoscopy With Correlated Frequency Combs, Xiaobing Zhu

Optical Science and Engineering ETDs

In this dissertation a sensing method applying to any physical quantity that modifies optical phase is developed. Two pulses are produced inside a synchronously pumped Optical Parametric Oscillator, generating two identical, undistinguishable frequency combs. The physical quantity to be measured applies a small phase shift/round trip to one of the pulses, resulting in a frequency shift of the corresponding comb. The latter frequency is measured as a beat by interfering the two combs on a detector. A world record resolution, close to the quantum limit, of 0.033 nanoradian (corresponding to 0.006 fm in displacement) is achieved. A detailed analysis of …

Advancing Diamond Quantum Sensors: Isotropic Flux Concentrators And Phase Noise Mitigation, Maziar Saleh Ziabari

Optical Science and Engineering ETDs

Two methods for improving the sensitivity of nitrogen vacancy quantum sensors in diamond are explored. First, by passively concentrating the magnetic flux, three orthogonally oriented ferrite truncated cone pairs amplify the field isotropically by 19 times, allowing measurement of Earth's field without a bias field and increasing sensitivity. Through thorough analysis, modeling and tuning a novel 3-dimensional flux concentrator system, we achieve a fractional standard deviation of less than 1% anisotropy and quantify minimal deadzones and ambient temperature-limited variations below 40 nT/hour. Second, we characterize, model and calculate phase noise in NV experiments, which in NV sensors is effectively indistinguishable …

Theoretical And Experimental Investigation Of Liquid-Liquid Phase Separation: Characterizing Elastin-Like-Polypeptides, Adam D. Quintana

Chemical and Biological Engineering ETDs

This dissertation develops and validates a semi-empirical Flory–Huggins-based interaction model, combined with Cahn–Hilliard simulations, for predicting multi-component liquid–liquid phase separation (LLPS) in elastin-like polypeptide (ELP) systems. Equilibrium droplet compositions, measured using a PDMS-based microfluidic device, enabled direct parameterization of interaction coefficients. The model was applied to generate phase diagrams and assess composition dependence in ternary mixtures. Cahn–Hilliard simulations were conducted to explore potential phase morphologies under different interfacial conditions. Multi-component Lattice Boltzmann simulations were implemented to model droplet morphology evolution under varying interfacial and diffusive parameters, reproducing experimentally relevant morphologies. A three-phase wetting study revealed conditions for selective wetting and …

Investigating Long-Lasting Meteor Train Phenomena In Optical And Radio Regimes, Logan E. Cordonnier

Physics & Astronomy ETDs

Throughout history, meteors have been regarded as fascinating and portentous events, with bygone astronomers diligently recording their occurrence. The research presented herein continues in this tradition, using modern instruments, software, and data reduction techniques to study long-lasting meteor trail phenomena, specifically in the optical (persistent trains; PTs) and radio (meteor radio afterglows; MRAs) regimes. The overarching goal was to investigate the similarities between these phenomena, which began with the creation of a PT catalog. Many of the prior assumptions about the nature of PTs were found to be unsubstantiated, and several new behaviors were uncovered. This includes the discovery of …

Yb:Ylf Optical Cryocoolers: Saturation Effects, Pump Management, Robust Thermometry, And Novel Architectures, Jackson Kock

Optical Science and Engineering ETDs

Solid-state optical refrigeration using anti-Stokes fluorescence offers a compact, vibration-free route to cryogenic cooling. This dissertation advances ytterbium-doped yttrium lithium fluoride (Yb:YLF) refrigerators, achieving a world record payload cooling temperature of 124 K by addressing key limitations due to absorption saturation. An expanded theoretical model incorporating saturation effects enables accurate predictions of cooling performance under high pump intensities. To improve pump control, a modeling framework for astigmatic Herriott cells was developed, revealing how beam clipping and intensity impact coupling efficiency. A novel fluorescence-based thermometry method was also established, providing accurate, orientation-independent temperature sensing by overcoming reabsorption and crystal orientation. Finally, …

Development Of A Near Terahertz Backward Wave Oscillator Using Standard Waveguide, Alexander Glick

Electrical and Computer Engineering ETDs

There is a demand for terahertz (THz) frequency radiation sources. Applications include, but are not limited to, imaging for medical and security purposes, biochemical and organic spectroscopy, and velocimetry. Historically, there was a limited supply of THz devices due to technological limitations. In recent years much progress has been made to reduce this “gap” in supply and demand for THz sources. This work proposes a vacuum electronic device that produces high power, extremely high frequency radiation in the G-band, by utilizing a backward wave oscillator (BWO) based on WR3 standard waveguide. This device is compact, fundamentally simple, and has great …

Exploring The Very Early Cosmological History With Dark Matter And Primordial Black Holes, Phuc Duc Loc Ngo

Physics & Astronomy ETDs

We explore the possibilities of nonstandard early cosmological histories and their potential roles to explain DM. We study how particle DM is produced with scenarios of early matter domination (EMD), how primordial black holes (PBHs), which could also be a DM candidate in certain mass ranges, are formed with enhanced curvature perturbation or FOPT and the corresponding gravitational wave (GW) signals, how PBHs could increase their mass by accretion during EMD and the corresponding GW signals.

Challenging $\Lambda$Cdm: Unraveling Cosmic Distances, Dark Sector Phenomenology, And Alternative Primordial B-Mode Sources, Kylar L. Greene

Physics & Astronomy ETDs

The dominant Lambda Cold Dark Matter (LCDM) cosmological model, while remarkably successful, increasingly shows signs that it may not fully describe our Universe, as persistent tensions in expansion rates and structure formation remain unresolved. In this thesis, I challenge the LCDM paradigm using novel theoretical frameworks combined with rigorous numerical analyses. I demonstrate that the expansion-rate tension fundamentally reflects underlying distance disagreements, and that the Thomson scattering rate strongly restricts higher pre-recombination expansion rates without additional physics. Further, I present a novel cosmological model using a mirror dark sector and varying fundamental constants, revealing an observational degeneracy allowing significantly higher …

Local-Neutrosophic Logic And Local-Neutrosophic Sets: Incorporating Locality With Applications, Florentin Smarandache, Takaaki Fujita

Branch Mathematics and Statistics Faculty and Staff Publications

The study of uncertainty has been a significant area of research, with concepts such as fuzzy sets [87], fuzzy graphs [51], and neutrosophic sets [58] receiving extensive attention. In Neutrosophic Logic, indeterminacy often arises from real-world complexities. This paper explores the concept of locality as a key factor in determining indeterminacy, building upon the framework introduced by F. Smarandache in [73]. Locality refers to processes constrained within a specific region, where an object or system is directly influenced by its immediate surroundings. In contrast, nonlocality involves effects that transcend spatial or temporal boundaries, where changes in one location have direct …

Ge/Sige Quantum Wells: Material For The Post-Moore Era, Troy Alexander Hutchins-Delgado

Optical Science and Engineering ETDs

This dissertation demonstrates high-quality germanium quantum wells on a 200 mm silicon wafer platform, enabling novel device possibilities. Partnering with a commercial silicon-germanium epitaxy supplier, we obtained shallow, undoped germanium quantum wells with high-crystalline quality, confirmed through x-ray diffraction, secondary ion mass spectroscopy, high-resolution scanning transmission electron microscopy, and energy dispersive x-ray spectroscopy. Hall bar devices fabricated on single quantum wells revealed that surface preparation can tune transport properties while maintaining peak mobilities around 10⁵ cm²V⁻¹s⁻¹. Manganese-germanide spintronic contacts were integrated via solid-state reaction, with contact quality assessed through Schottky diodes, transfer length …

Scalable Methods For Performant Control Of Hyperfine Qubits In Atoms And Ions, Matthew N. H. Chow

Physics & Astronomy ETDs

Qubits encoded within internal energy levels of atoms and ions have been used to demonstrate high-performance primitives of quantum computing for small numbers of qubits. Yet, the path to achieving sufficient size and fidelity for useful fault-tolerant quantum computation remains daunting. In this dissertation, I present several techniques I developed as steps along this path. These results include high-fidelity, low-loss detection for alkali atoms in optical tweezers, crosstalk-mitigated parallel one-qubit gates, robust entangling gates on trapped ions, and leakage-to-erasure conversion for non-destructive detection of atom loss errors. Through this collection of techniques, I have sought to make full use of …

Super-Resolution Magnetic Microscopy And Earth’S Field Magnetometry With Color Centers In Diamond, Nazanin Mosavian

Optical Science and Engineering ETDs

In recent years, the negatively charged nitrogen- vacancy (NV) center has emerged as a promising solid-state color center capable of measuring magnetic fields with high sensi- tivity and spatial resolution under ambient conditions. In this thesis I will discuss how we perform super resolution magnetic microscopy and acquire magnetic field images of nanoparticle samples at 100 nm resolution. I will explain how 3D flux concentrators increase magnetic field amplitude and allows us to measure vector component magnetic fields as low as 50 µT with a diamond magnetometer, without the use of an additional bias magnetic field. I also describe how …

Exploration Of Semiconductor Gain Medium, Resonator, Pump, And Frequency Stabilization For Laser Guide Star Applications, Mingyang Zhang

Optical Science and Engineering ETDs

Laser Guide Star (LGS) systems are essential for adaptive optics in ground-based astronomical observation. This dissertation demonstrates the feasibility of semiconductor-based LGS systems using the membrane external-cavity surface-emitting laser (MECSEL) platform, employing multiple quantum wells. Various laser cavity configurations were analyzed through simulations and experiments. The in-well pumping method was explored to reduce the quantum defect and address thermal limitations. Multi-pass pumping schemes were designed with Zemax modeling and demonstrated experimentally. To simplify multi-pass pumping, the hybrid-MECSEL (H-MECSEL) design was introduced. COMSOL modeling studied thermal management and thermal lensing effect.

The H-MECSEL achieved approximately 30 W of output power at …

Nidus Idearum. Scilogs, Xiii: Structure / Neutrostructure / Antistructure, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

In this thirteenth book of scilogs – one may find topics on Neutrosophy, Plithogeny, Physics, Mathematics, Philosophy – email messages to research colleagues, or replies, notes, comments, remarks about authors, articles, or books, spontaneous ideas, and so on. It presents new types of soft sets and new types of topologies.

Exchanging ideas with Mohammad Abobala, Ishfaq Ahmad, Ibrahim M. Almanjahie, Fatimah Alshahrani, Nizar Altounji, Muhammad Aslam, Said Broumi, Victor Christianto, R. Diksh, Feng Liu, Frank Julian Gelli, Erick Gonzalez Caballero, Riad Hamido, Yaser Al-Hasan, Ahmed Hatip, Yasin Karmouta, Nivetha Martin, Preda Mihăilescu, V. Lakshmana Gomathi Nayagam, Ze Carlos Tiago de …

Entanglement With Neutral Atoms In The Simulation Of Nonequilibrium Dynamics Of One-Dimensional Spin Models, Anupam Mitra

Physics & Astronomy ETDs

Quantum entanglement is a key ingredient for quantum information processing with capabilities beyond that of classical computation. We study the generation and role of entanglement in the dynamics of spin-1/2 models, both for the design of quantum gates for general-purpose quantum computation and for quantum simulation of interacting spin models. We introduce the neutral atom Mølmer-Sørensen gate, involving rapid adiabatic Rydberg dressing interleaved in a spin-echo sequence. We show its robustness to quasi-static experimental imperfections and favorable scaling with the time-energy scales of Rydberg-mediated entanglement generation. In quantum simulation, we consider critical behavior in quench dynamics of transverse field Ising …

Learning, Optimizing, And Simulating Fermions With Quantum Computers, Andrew Zhao

Physics & Astronomy ETDs

Fermions are fundamental particles which obey seemingly bizarre quantum-mechanical principles, yet constitute all the ordinary matter that we inhabit. As such, their study is heavily motivated from both fundamental and practical incentives. In this dissertation, we will explore how the tools of quantum information and computation can assist us on both of these fronts. We primarily do so through the task of partial state learning: tomographic protocols for acquiring a reduced, but sufficient, classical description of a quantum system. Developing fast methods for partial tomography addresses a critical bottleneck in quantum simulation algorithms, which is a particularly pressing issue for …

Plasma Diagnostics For Anode Cathode Plasmas And High Energy Density Physics On A Linear Transformer Driver, Robert Beattie-Rossberg

Electrical and Computer Engineering ETDs

A twelve-brick air insulated linear transformer driver (LTD) was characterized by charging to voltages ranging from 30 to 70 kV and delivering energy to two separate resistive loads. Various plasma diagnostics were built and fielded with an emphasis on the design, implementation and analysis of a Mach Zehnder interferometer, a moiré deflectometer and a spectroscopy system providing information on the temporal evolution of plasma electron density and atomic composition. Rogowski coils, XRD radiation detectors, framing camera images and time integrated DSLR images are used to further understand load conditions where current data, x ray radiation data, velocity data and instability …

A New Effective Gravitational Lensing Approach To Constrain Dark Matter, Birendra Dhanasingham

Physics & Astronomy ETDs

Galaxy-scale strong gravitational lenses offer a unique window into understanding the nature and distribution of dark matter at sub-galactic scales. Beyond the main-lens subhalos, the inclusion of line-of-sight dark matter halos has become essential in lens studies due to their substantial role in perturbing lensed images, making multi-plane lensing a crucial aspect of any lens study. We highlight that these line-of-sight halos appear extended tangentially along the lensing critical line in the effective convergence maps due to the nonlinear nature of multiplane lensing, resulting in a characteristic anisotropic signature in the deflection field. Leveraging tools from large-scale structure analyses, this …