Biology Commons^™

Adolescent Seizure Impacts Oligodendrocyte Maturation, Neuronal-Glial Circuit Formation, And Myelination In The Mammalian Forebrain, Kylie Foutch, Iris Tilton, Aundrea Cooney, Cole Bender, Collin Licharz, Megan Baldemor, Caitlyn Rock, Atehsa Asal Sahagun, Robert Brock, Chloe Franzia, Mary Francis Garcia, Raghav Gupta, Christopher Arellano Reyes, Mariyam Lokhandwala, Daniela Moura, Hirofumi Noguchi, Laura Cocas

Biology

Oligodendrocyte progenitor cells differentiate into oligodendrocytes, which myelinate axons during development and following demyelinating injury. However, the mechanisms that drive the timing and specificity of developmental myelination are not well understood. We hypothesized that oligodendrocyte progenitor cell proliferation and differentiation would be affected by pathological neuronal activity during adolescent development when developmental myelination is occurring and that this would also impact neuron-to-oligodendrocyte progenitor cell connectivity and myelination. We used kainic acid to induce a seizure in mice, treating equal numbers of males and females, in sample sizes of at least five animals. We found that the seizures led to increased …

Dataset For "The Role Of Metacognition And Confidence In Quantitative Reasoning In College Biology Courses", Joseph Dauer, Anum Khushal, Brian A. Couch, Robert L. Mayes, Kent Rittschof

School of Natural Resources: Faculty Publications

Quantitative modelling is a fundamental skill for biology students with performance determined by a host of cognitive and metacognitive resources and requiring instructors to integrate key quantitative dimensions into teaching biology. Using an assessment of quantitative modelling in biology, we explored biology students’ (n = 930 higher education students) modelling practices (i.e., abilities to create, test, revise), metacognition about the nature of models and confidence in their capabilities to model. Students performed best on items related to understanding variables used in models and performed more poorly on items related to interpreting, creating, and using models to understand biological phenomena. …

Racial Health Disparities Among Pregnant Women Of Color In New York City: Biological And Systemic Impacts, Kaylin Peña

Pitzer Senior Theses

Racial Health Disparities Among Pregnant Women of Color in New York City: Biological and Systemic Impacts

Abstract

This thesis aims to explore how racial health disparities, underrepresentation in gynecology, and socioeconomic barriers contribute to adverse pregnancy outcomes among women of color in New York City. Through an interdisciplinary approach that combines resources from medical anthropology and human biology, this research will examine the biological implications of chronic stress, specifically HPA axis dysregulation, and its role in maternal health outcomes. With the idea of intersectionality, as conceptualized by Kimberlé Crenshaw, the study analyzes the various effects of systemic inequities and social …

Identification Of Host-Pathogen Protein Interactions: Yeast Two-Hybrid Analysis Of Sars-Cov-2 Nsp10 And Human Cellular Proteins, Antonios Argyriou

Selected Full-Text Master Theses 2021-

The ongoing COVID-19 pandemic, caused by SARS-CoV-2, has resulted in over 774 million cases and 7 million deaths worldwide, establishing it as one of the most devastating pandemics in recorded history. While current therapeutic approaches primarily target viral entry mechanisms and specific enzymes, the limited understanding of non-structural protein functions hinders the development of comprehensive antiviral strategies. This research focuses on Nsp10 (non-structural protein 10), a highly conserved 139-amino acid protein essential for viral mRNA capping and replication. Nsp10 serves as a critical cofactor in the formation of methyltransferase complexes with Nsp14 and Nsp16, playing a vital role in viral …

Coordinating The Energetic Strategy Of Glia And Neurons For Memory, Hannah Shoenhard, Amita Sehgal

Biology Faculty Research and Scholarship

Memory consolidation requires rapid energy supply to neurons. In a recent study, Francés et al revealed the signal by which a neuron commands glia to limit fatty acid synthesis in favor of metabolite export during memory formation in Drosophila melanogaster. This mechanism coordinates just-in-time glial energy delivery in response to dynamic neuronal needs.

Periconceptual Nutrition And The Preimplantation Embryo: Approaches For Intervention And Generational Health, Abigail Klein

Dissertations and Theses

The typical American diet exceeds dietary fat recommendations, contributing to the rising rates of obesity. This negatively impacts fertility, pregnancy and fetal growth, and lifelong offspring health. During pregnancy, this also increases risk of co-morbidities like gestational diabetes. Despite this, lipids are not screened during pregnancy and limited research exists evaluating these co-exposures on offspring health. Our lab used a rat model of maternal high fat (HF) diet with late-gestation diabetes (DM) to demonstrate that mitochondrial dysfunction and oxidative stress incite lifelong cardiometabolic disease risk in offspring. To determine the timing of damage, we hypothesized that maternal overnutrition incites mitochondrial …

If You Give A Tadpole A Chemosensory Stimulus: Detection Of Invasive Predatory Cues And Signs Of Conspecific Communication In Pseudacris Sierra Tadpoles, Faben Tesfazion

Scripps Senior Theses

Amphibians are at disproportionately higher risks of extinction than all other vertebrate classes, and a major causing factor is invasive predation. The American bullfrog (Lithobates catesbeianus), native to Eastern North America, is a notorious invasive species which preys on native Sierran treefrogs (Pseudacris sierra) in Northern and Central California. These treefrogs have yet to be placed on any Special Animals List, suggesting the presence of adopted behaviors against predation. Past studies have documented the importance of chemical sensing in anuran tadpoles as predator detection tools. This study tests if Sierran treefrog tadpoles can recognize invasive chemical …

Promoting Acorn Survival Using Capsaicin Seed Coatings Is Strengthened By The Removal Of Invasive Shrubs, Mark Fuka, Brian M. Connolly, John L. Orrock

Biology Faculty Scholarship

Promoting regeneration of native trees, like Quercus spp., is a priority for land managers given the ecological and economic importance of oak woodlands. Although direct seeding may promote recruitment of Quercus spp., the effectiveness of direct seeding may be greatly reduced in environments where the activity of granivorous rodents is high. Importantly, the activity of granivorous rodents may be highest in environments where oak restoration is most desired, such as habitats invaded by non-native woody shrubs. Implementing chemical deterrents to granivory should promote direct seeding success; yet it is essential to understand if those deterrents are effective in challenging restoration …

Physiological Responses And Plant Trait Interactions With Coastal Dune And Swale Development, Emily C. Riffe

Theses and Dissertations

Vegetation is crucial to coastal ecosystems experiencing climate change and storm-induced disturbance. Plant species interact with the physical environment and are considered “ecosystem engineers.” Sand dunes and barrier islands are at the forefront of climate change impacts as they are barriers that protect landward habitat and communities. Nature based solutions are utilized to protect infrastructure on developed coastlines. Understanding how dominant plant species interact with and alter the physical environment enhances our understanding of the mechanisms of change and consequences to the system. The goal of this research was to quantify physiological and functional trait differences in dominant species found …

Quantifying The Vulnerability Of Smooth Dogfish And Winter Skate To Electromagnetic Fields From Offshore Wind Transmission Cables In The Mid-Atlantic Shelf, Rachel A. Sechrist

Theses, Dissertations and Culminating Projects

The development of offshore wind structures in the northeastern U.S. will contribute to renewable energy goals, but will overlap with many marine species as well as economically important fisheries. High voltage transmission cables from offshore wind farms emit electromagnetic fields (EMFs) that elasmobranchs may detect using sensory organs known as ampullae of Lorenzini. However, sensitivity to EMFs varies by species due to differences in the number and arrangement of pores, the length of subdermal canals within the ampullae of Lorenzini sensory network, and the habitats they reside and regions they forage. For species who reside or forage in benthic regions, …

Neuroimmune Toll-Like Receptor Signaling Modulates C. Elegans Feeding Behavior In A Hunger State-Dependent Manner, Retwika Ganguly

Theses, Dissertations and Culminating Projects

Animals face the risk of encountering pathogenic microbes while searching for nutritive resources. Assessing the interplay between the benefits of nutrition vs. the risk of infection might influence the behavioral regulation of immune processes. In Caenorhabditis elegans (C. elegans), a nematode roundworm, behavioral immunity is partially regulated by the innate immune molecule TOL-1: a homolog of vertebrate Toll-like Receptor (TLR) proteins. TOL-1 influences C. elegans pathogen avoidance behaviors by promoting the development of CO2-detecting chemosensory neurons, which detect a signal linked to the presence of harmful pathogens. While TOL-1′s role in pathogen avoidance is well established, its impact in an …

Investigating Concealments In Infanticide: Incidents And Forensic Entomological Implications, Gillian L. Johnson

College of Graduate Studies: Theses & Dissertations

Forensic entomology plays a critical role in estimating the minimum postmortem interval (mPMIs), based on insect evidence. When victims are concealed, this can complicate mPMI estimates. Utilizing data from the National Violent Death Reporting System (NVDRS) from 2018 to 2021, I found that victims of infanticides and neonaticides are often concealed. I first investigated the demographics of offenders and victims, how often victims are concealed, and the most common means of concealment. I found that victims of infanticide were likely to be concealed 5% of the time, and neonaticides 50% of the time. Next, I investigated how concealment alters insect …

Joint Estimation Of Paternity, Sibships And Pollen Dispersal In A Snapdragon Hybrid Zone, Thomas James Ellis, David Luke Field, Nicholas H. Barton

Research outputs 2022 to 2026

Inferring genealogical relationships of wild populations is useful because it gives direct estimates of mating patterns and variance in reproductive success. Inference can be improved by including information about parentage shared between siblings, or by modelling phenotypes or population data related to mating. However, we currently lack a framework to infer parent–offspring relationships, sibships and population parameters in a single analysis. To address this, we here extend a previous method, Fractional Analysis of Paternity and Sibships, to include population data for the case where one parent is known. We illustrate this with the example of pollen dispersal in a natural …

Gene Expression And Dna Methylation Changes In Response To Hypoxia In Toxicant-Adapted Atlantic Killifish (Fundulus Heteroclitus), Neelakanteswar Aluru, Yaamini R. Venkataraman, Christopher S. Murray, Veronica Depascuale

Biology

Coastal fish populations are threatened by multiple anthropogenic impacts, including the accumulation of industrial contaminants and the increasing frequency of hypoxia. Some populations of the Atlantic killifish (Fundulus heteroclitus), like those in New Bedford Harbor (NBH), Massachusetts, USA, have evolved a resistance to dioxin-like polychlorinated biphenyls (PCBs) that may influence their ability to cope with secondary stressors. To address this question, we compared hepatic gene expression and DNA methylation patterns in response to mild or severe hypoxia in killifish from NBH and Scorton Creek (SC), a reference population from a relatively pristine environment. We hypothesized that NBH fish would show …

Rivers To The Deep Sea – Thoughts On My Career And Profession, Steve W. Ross

Gulf and Caribbean Research

Abstract: In this essay I review my 45+ year career and some of the significant changes I have observed. This journey involved research in rivers and streams, estuaries, coastal systems (including the continental shelf), and the deep sea to a depth of about 4,000 m. After completing undergraduate (BS, Duke University) and graduate (MA, University of North Carolina – Chapel Hill and PhD, NC State University) degrees in zoology, I found jobs as a Fishery Biologist (NC Division of Marine Fisheries), a program Research Coordinator (NC National Estuarine Research Reserve), and a Research Professor (University of NC – Wilmington). Between …

Effect Of Paxlovid On Neurodevelopmental Disorder Diagnosis Outcomes In Offspring Of Mothers Infected With Sars-Cov-2 During Pregnancy, Simone Rogers

CMC Senior Theses

The onset of the 2020 COVID-19 pandemic brought concern over the effects that this virus would have on pregnancy and fetal outcomes, specifically neurodevelopmental outcomes. Maternal immune activation (MIA), caused by infection during pregnancy, is known to result in neurodevelopmental disorder (NDD) diagnosis in offspring, typically autism spectrum disorder (ASD) and attention deficit/hyperactivity disorder (ADHD). This effect has already been observed in mothers who were infected with COVID-19 during pregnancy. However, in 2023, Paxlovid, the COVID-19 antiviral drug, became available to patients experiencing symptoms of the virus, including pregnant women. Consequently, this study seeks to determine whether the risk of …

The Coral Porites Lutea As A Regional And Local Proxy For Sea Surface Temperature In Hong Kong, And The Effects Of Typhoons On Proxy Accuracy, Brenna E. Bell

CMC Senior Theses

Proxies related to the climate have been used as a method to observe long-term changes occurring underwater that span long before we had the capability to measure environmental characteristics. Porites corals have been used as sea surface temperature (SST) proxies due to annual cyclicity in their growth process and mineral composition. As the climate differs globally, it is important to ensure that proxies are accurate regardless of location to measure changes in climate. This study examines Porites lutea corals as an SST proxy in the region of Hong Kong. Potential local differences in SST proxy calibrations within the surrounding waters …

Training Module And Assessment Strategy For Light Microscopy Skills Training In A Research Environment, Kristopher E. Kubow, Joseph A. Harsh

Faculty Scholarship

Training in specialized techniques and instrumentation is an important component of undergraduate and graduate education. While such training can occur in formal lab courses, it also occurs as students engage in research. Although training in a research lab setting is typically informal, implementing evidence-based practices from the classroom would be beneficial, particularly for learning complex techniques and instruments, for example, light microscopy. Using advanced microscopes for research is more complicated than using teaching microscopes in a course. In addition, microscopes are easy to misuse because they will generally always produce an image even if that image is suboptimal, misleading, or …

Elephant Megacarcasses Increase Local Nutrient Pools In African Savanna Soils And Plants, Courtney G. Reed, Michelle L. Budny, Johan T. Du Toit, Ryan Helcoski, Joshua P. Schimel, Izak P.J. Smit, Tercia Strydom, Aimee Tallian, Dave I. Thompson, Helga Van Coller, Nathan P. Lemoine, Deron E. Burkepile

Biological Sciences Faculty Research and Publications

African elephants (Loxodonta africana) are the largest extant terrestrial mammals, with bodies containing enormous quantities of nutrients. Yet, we know little about how these nutrients move through the ecosystem after an elephant dies. Here, we investigated the initial effects (1–26 months postmortem) of elephant megacarcasses on savanna soil and plant nutrient pools in the Kruger National Park, South Africa. We hypothesized that (H1) elephant megacarcass decomposition would release nutrients into soil, resulting in higher concentrations of soil nitrogen (N), phosphorus (P), and micronutrients near the center of carcass sites; (H2) carbon (C) inputs into the soil would stimulate …

Global Decoupling Of Functional And Phylogenetic Diversity In Plant Communities, Stefan A. Schnitzer

Biological Sciences Faculty Research and Publications

Plant communities are composed of species that differ both in functional traits and evolutionary histories. As species’ functional traits partly result from their individual evolutionary history, we expect the functional diversity of communities to increase with increasing phylogenetic diversity. This expectation has only been tested at local scales and generally for specific growth forms or specific habitat types, for example, grasslands. Here we compare standardized effect sizes for functional and phylogenetic diversity among 1,781,836 vegetation plots using the global sPlot database. In contrast to expectations, we find functional diversity and phylogenetic diversity to be only weakly and negatively correlated, implying …

Spatial Implications Of Potential Treeline Campfire Restrictions In Selected Usfs-Managed Colorado Wildernesses, Rebecca Hippensteel

Masters Projects

High-elevation ecosystems in Colorado’s Wilderness areas are ecologically sensitive and particularly vulnerable to campfire impacts, which can damage vegetation, alter soil chemistry, and degrade wilderness character. This study presents a preliminary proof of concept evaluating the spatial implications of banning campfires at or above 11,000 feet—used here as a proxy for treeline—in twelve U.S. Forest Service-managed Wilderness areas. Using 30-meter resolution Digital Elevation Models from the USGS National Map and Earth Explorer, a raster-based analysis in ArcGIS Pro identified and quantified acreage above 11,000 feet. Across the twelve Wilderness areas, 268,601 acres were found to lie above treeline, representing an …

Brachial Plexus Lesions: Uncommon Causes And Clinical Sequelae, Lucy Greenhagen

Biology and Microbiology Graduate Students Plan B Research Projects

The brachial plexus is a complex network of nerves that transmit motor and sensory information between the spinal cord and upper extremities. Brachial plexus lesions may be caused by a broad range of congential and traumatic conditions. These lesions present a challenge to healthcare providers both for diagnosis and treatment. While variations in the brachial plexus have been widely reported, resources outlining the prevenance and involvement of anatomical variation along with their possible clinical presentation are more limited. The objective of this review is to describe uncommon causes of brachial plexus lesions and the clinical challenges they present for providers. …

Alternative Treatments And Potential Cures For Type 1 Diabetes, Dillon Peterson

Biology and Microbiology Graduate Students Plan B Research Projects

Type 1 diabetes (T1D) is an autoimmune disease that affects multitudes of people without a cost-effective cure. T1D is caused by the immune system reaching a threshold where it then begins to attack the beta cells in the pancreas causing inflammation, which eventually leads to the death of beta cells. Once a large majority of the beta cells die off, the pancreas begins to inadequately supply insulin to the body, which is when the symptoms of T1D begin to emerge. To treat these symptoms, the person must utilize synthetic insulin. The utilization of synthetic insulin, along with the plethora of …

Epilepsy: Etiology And Treatment Methods, Avital Nightingale

The Science Journal of the Lander College of Arts and Sciences

Epilepsy is a common neurological disorder that is caused by abnormal electrical activity in the brain. Due to the evolution of our understanding of epilepsy and its causes, a variety of therapeutic options have been developed to modulate seizures and limit their occurrence rate. Medication, diet and surgery have been the traditional treatments offered to individuals suffering from epilepsy but the latest advancements in neurotechnology have given patients with drug resistant epilepsy hope by providing options other than surgery. While the disorder is a complex one and its pathogenesis not yet fully understood, recent research has provided insight into the …

Strategies To Address The Growing Impact Of The Antibiotic Resistance Crisis, Rina Balter

The Science Journal of the Lander College of Arts and Sciences

As time progresses, more bacterial strains are becoming resistant to the antibiotics developed to treat them. Impeding such intractable infections should be a major clinical priority, as previously treatable diseases have begun to incur a fatality rate that will escalate catastrophically unless it is halted. This research paper explores relevant information regarding the advances in developing alternative strategies to antibiotics to combat antimicrobial resistant (AMR) bacteria, within the context of clinical application. Recognizing the profound impact antimicrobial resistance (AMR) will have on patient health enables the implementation of proactive measures to curb the expanding prevalence of multidrug-resistant (MDR) pathogens. This …

Is Placenta Stem Cell Banking Worthwhile?, Chaya Nathan

The Science Journal of the Lander College of Arts and Sciences

Regenerative medicine has gained significant traction due to its potential to repair or replace damaged tissues and organs, with stem cell therapies emerging as a promising avenue for treating various diseases. While bone marrow-derived MSCs (BM-MSCs) are commonly used in clinical settings, their limitations, such as the invasive extraction procedure and limited proliferation capacity, underscore the need for alternative stem cell sources. Placenta-derived mesenchymal stem cells (PDMSCs) represent a promising solution, offering advantages such as greater proliferative capacity, faster expansion rates, and reduced risk of immune rejection compared to adult stem cells. The placenta is a rich source of MSCs, …

Limb Regeneration In Amphibians & Mammals, Jacob Mamrout

The Science Journal of the Lander College of Arts and Sciences

This thesis will give an in-depth analysis into the mechanisms of regeneration that amphibians use and how the blastema forms. It will also discuss genes and proteins that play a role including the P53 gene, Transforming Growth Factor Beta, CD59, and others. Regenerative potential of mammals will be discussed using the information found. Findings include that mammals may have regeneration potential because of the ability we have to deactivate certain genes to allow cells to dedifferentiate.

Gut Microbiome Dysbiosis And Its Contribution To Carcinogenesis, Daphne Grabie

The Science Journal of the Lander College of Arts and Sciences

The gut microbiome, a diverse community of microorganisms within the gastrointestinal (GI) tract, plays a pivotal role in maintaining health through digestion, immune regulation, and homeostasis. Emerging evidence links gut microbiome dysbiosis—a disruption in its composition and function—to the development and progression of various cancers, particularly within the GI tract. This review explores the multifaceted relationship between the gut microbiome and carcinogenesis, highlighting key microbial mechanisms, including chronic inflammation, production of carcinogenic metabolites, and immune modulation. Specific pathogens such as Fusobacterium nucleatum, Escherichia coli, and Helicobacter pylori are implicated in colorectal, gastric, and esophageal cancers, respectively, through pathways that promote …

Battling Infertility, Shirah Abrahams

The Science Journal of the Lander College of Arts and Sciences

Infertility is a complex condition that affects men and women equally and is defined by failure to achieve pregnancy after a year of trying to conceive. This paper addresses both environmental contributions to infertility, such as the effects of smoking, poor nutrition, and exposure to radiation, as well as biological contributors. Biological factors that contribute to infertility include sperm DNA fragmentation, chromosomal mutations, anovulatory dysfunction, and tubule blockages. This paper delves into various treatment options to improve fertility in both males and females, including medications, lifestyle adaptations, and surgeries. These treatment options can restore and improve ovulatory function, sperm motility …

Mild Traumatic Brain Injury: Signs, Symptoms, And Intervention, Shoshana Levin

The Science Journal of the Lander College of Arts and Sciences

Mild traumatic brain injury (mTBI) is a specific type of brain injury, often referred to as a concussion. Relying on existing research, this paper will collect the data that is available on concussions, numerous methods of treatment, and the complications of repeated injury. mTBI precipitates a host of cognitive, physical, and emotional symptoms, all of which can severely affect one’s daily life if left untreated. This paper will also address a range of possible treatment methods, including but not limited to acupuncture, cognitive behavioral therapy, and physical therapy. The efficacy of a multifaceted approach to treatment is emphasized, combining opinions …