Computer Engineering Commons^™

Domain-Specific Graph Rag Pipelines: Optimized Approaches For Building Efficient Personal Knowledge Repositories, Omkar Yadav

Master's Projects

Managing personal data, including notes, calendar events, to-do lists, and other personal information, has become increasingly complex and challenging. In response to this issue, I propose a framework using RAG that enables a large language model (LLM) to efficiently query this data without requiring training on the personal data itself. Conventional retrieval systems, including those leveraging vector-based retrievalaugmented generation (RAG), are effective at handling basic queries but struggle to deliver coherent global abstractions, integrate diverse knowledge sources, and account for temporal nuances. This research explores domain-specific Graph based RAG frameworks that incorporate a knowledge graph to better model relationships, thereby …

Enhancing Recommender Systems Using Graph Neural Networks, Long Short-Term Memory And Textual Embeddings, Tianxiang Chen

Master's Projects

Recommender systems surround us. They shape what we watch, how we buy, and even what our future might look like next. The Amazon Review Dataset and Movielens, those two datasets will help this project explore how to improve recommender systems through the user’s preferences. Two methods were combined: sequence-based models and graph-based models. Sequence models, such as LSTMs and Transformers, look at the order of user actions to find patterns by their sequence. On the other hand, Graphbased models focus on relationships between users, items, and their attributes. Textual embeddings added depth and context. Both methods offer something special, according …

Large Language Model Powered Etl Pipeline Development A Project Report, Aditya Chandras

Master's Projects

This projects discusses the use of Large language model to simplify and automate Extract, Transform, Loading (ETL) development. Data engineering tasks oUen need technical experDse, thereby challenging non-experts and even industry professionals for such Dme intensive operaDons. The project tackles these challenges by employing quanDzaDon of a base Lllama-2-7b-Chat model using QLora technique. The lowered precision of the base model allow further execuDon on a limited hardware resource. The project further performs Supervised fine-tuning trainer (SFT) to perform fine-tuning, specializing the model for generaDng script for ETL tasks. The fine-tuned model is evaluated through a series of micro and comprehensive …

Optimizing Integrated Access And Backhaul Topology Using Monte Carlo Tree Search, Srimanth Reddy Ummenthala

Master's Projects

Integrated Access and Backhaul (IAB) plays a central role in enabling scalability and high-throughput in wireless networks, especially in areas where wired backhaul is not feasible. Optimizing the topology of IAB networks is a complex task, involving trade-offs between path loss, node capacity, and link quality. To address this, this project investigates a Monte Carlo Tree Search (MCTS)-based approach to improve overall network performance by maximizing the capacity of network, considering Signal-to-Noise Ratio (SNR) on wireless links. MCTS provides a guided search mechanism to construct topologies efficiently under the constraints and is evaluated against baseline topologies. Experimental results show that …

Dynamic Pricing For Revenue Maximization In 5g Networks With Elastic Network Slicing And Reinforcement Learning, Naisheel Shah

Master's Projects

Network slicing is a concept that enables a diverse array of network applications with lots of unique service requirements. For the scope of this research, we delve into elastic network slicing, which has a potential benefit for both the providers and users through cost-effective resource utilization. Dynamic pricing of these slice resources is a method for operators to realize the balance of different types of network slices by implicitly communicating the current network state to slice users. We have designed a custom pricing scheme using Deep Reinforcement Learning for elastic network slices that maximizes the revenue of slice providers while …

Link Failure Localization In Hierarchical, Multidomain Optical Networks, Martin Mihailov Bojinov

Master's Projects

Optical networks transport data encoded on light signals over optical fiber cables. Individual optical networks are managed by domain administrators, such as service providers, vendors, or regional bodies. Multidomain optical networking explores the possibility of enabling seamless data transmission across domain boundaries. In this project, we explore how we can perform network monitoring in a hierarchical multidomain optical network while preserving domain security and autonomy. This is done by allocating dedicated monitoring trails across various broker abstractions of our network topologies. We propose three heuristic functions that expedite trail selection. Of the three heuristics, our least monitored algorithm performs the …

Improving Contextual Retrieval For Long Documents In Q & A Systems, Sakshi Garg

Master's Projects

With the vast amount of information available on the internet distributed across several lengthy documents, finding relevant information has become more important and challenging. The goal of this project is to develop advanced techniques to retrieve information from long texts in order to deliver accurate and relevant results while ensuring speed and efficiency. As part of this work, we employ techniques to address unique difficulties posed by large and complex documents. This paper presents a custom Retrieval-Augmented Generation (RAG) framework designed to improve contextual retrieval in long and multi-document settings. In this paper, we employ several techniques like summarization, semantic …

Suicidal Ideation Detection On Reddit Using Llm-Annotated Data And Graph Neural Networks, Ikbal Singh Gurdev Singh Dhanjal

Master's Projects

Suicide is the fourth leading cause of death among people aged 15-29. More than 720, 000 people commit suicide every year. During the COVID-19 pandemic, we saw an increase in people seeking out mental health support on anonymous forums like Reddit. These anonymous forums allow people to express their suicidal ideation without judgment and give them a support structure that not everyone has. The aim of this project is to detect suicidal ideation using Reddit. In this work, we propose SIRGEL (Suicidal Ideation on Reddit using Graph Embeddings and LLMs), a dual-pipeline approach that combines large language model (LLM)- based …

Evorgcn: Harnessing Esm-2 Evolutionary Embeddings With Relational Gcns For High-Fidelity Protein-Protein Interaction Prediction, Mohit Kunder

Master's Projects

Accurately predicting protein-protein interactions (PPIs) is essential for understanding cellular function and advancing biomedical discovery. We model PPIs as graphs, where nodes represent proteins and edges denote interactions. Using interaction data from the STRING database, we use two samples of it, namely the benchmark datasets—SH27K and SH148K—filtered by confidence score and annotated by interaction mode (multiple relations). In this project, we present EvoRGCN, a graph-based machine learning framework for PPI prediction that integrates both sequence-level (ESM-2 embeddings) and network-level information. We incorporate various Graph Neural Network architectures, including Graph Convolutional Networks, Graph Attention Networks, and Relational Graph Convolutional Networks. Our …

Rift - Reddit Information Falsity Tagger, Parth Joshi

Master's Projects

Social media platforms such as Reddit are widely used for sharing and consuming information. User-generated content poses a great risk for misinformation creation and dissemination on these platforms. “Fake news”, as it is commonly referred to, has far-reaching social implications, swaying public perception, making political viewpoints more radical, and adversely impacting health decisions. The covariable features that come with fake news make it even harder to detect because it is presented in the form of text, images, videos, and even social interactions. This paper describes a novel method for detecting fake news on Reddit: RIFT, short for Reddit Information Falsity …

Synthetic Malware Generation Using Generative Ai, Phanidhar Sai Sravan Chandana

Master's Projects

Malware grows in numbers and complexity, evading conventional signature-and anomaly-based defenses and worsening extreme data sparsity and class imbalance problems for machine learning based detection. Generative models, specifically GANs conditioned on contextual embeddings like BERT have proved effective augmenting training corpora to improve classifier accuracy, but these approaches have largely produced family-specific samples In this paper, we propose a generalized augmentation scheme for generating robust malware embeddings for various families. We begin by extracting opcode sequences from 13 malware families and encoding them into three embedding methods: CountVectorizer, TF-IDF, and BERT’s ‘[CLS]‘ vectors. We therefore train standard GANs and Wasserstein …

Comparative Analysis Of Embedding Techniques With Clustering Algorithms For Malware Opcodes, Ayush Koul

Master's Projects

Malware detection and classification remain critical challenges in cybersecurity, especially as malicious software becomes increasingly sophisticated and prevalent. While much of the work involving embeddings has traditionally relied on supervised learning approaches, there is significant potential in leveraging unsupervised learning techniques to discern hidden structures in malware data. By employing embedding techniques to convert malware samples into high-dimensional vector representations, we can capture the subtle and complex patterns inherent in malicious code without relying on pre-labeled data. This unsupervised approach helps categorize malware into predefined malware families, greatly aiding in developing cybersecurity solutions. In contrast to traditional supervised models that …

Application Of Advanced Convolutional Neural Network With Robust Hashing On Obfuscated Image Based Malware Dataset, Sanket Shekhar Kulkarni

Master's Projects

This project report provides in-depth details on the creation of a malware classification system that makes use of Convolutional Neural Networks (CNNs) that have been strengthened by data set obfuscation and strong hashing. We test many CNN architectures, including MobileNet, ResNet, and DenseNet, using rigorous hashing and obfuscation techniques on datasets. The entire pipeline is described in this research, which ranges from the gathering and preprocessing of data sets to the application of novel hashing techniques that boost overall accuracy in classification and increase resilience against malicious attacks. Parallel to this, we show that dataset obfuscation adds an additional level …

Enhancing Robustness Of Cnn Model For Malware Detection Using Gan-Based Data Augmentation And Transfer Learning, Milind Anand Pathak

Master's Projects

Malware classification is a critical component in the field of cybersecurity. Accurate identification of a malware family can enable timely threat detection and response. In this thesis, we propose a robust image-based malware classification pipeline using Convolutional Neural Networks (CNNs) and Generative Adversarial Networks (GANs), with a focus on improving performance for underrepresented malware families. We train a baseline CNN model on the Malimg dataset across 25 malware families, but observe misclassifications in classes with limited data and overlapping visual features. To address this, we apply targeted augmentations and generate class-specific synthetic data using StyleGAN2-ADA. A CNN trained on the …

Transforming Chatbot Text: A Sequence-To-Sequence Approach To Human-Like Text Generation, Natesh Reddy

Master's Projects

With the advancements in Large Language Models (LLMs) such as ChatGPT, the boundary between text written by a human and that created by AI has become blurred. This poses a threat to systems designed to detect AI-generated content. In this work, we adopt a novel strategy to adversarially transform GPT-generated text using sequence-to-sequence (Seq2Seq) models, to make the text more human-like. We concentrate on improving GPT-generated sentences by including significant linguistic, structural, and semantic components that are typical of human-authored text. The goal is to then use this transformed data to train a more robust detection model. Our experiments show …

Reinforcement Learning-Based End-To-End Monitoring Path Selection In Multi-Domain Optical Networks, Soham Choudhury

Master's Projects

This paper presents a novel approach for optimizing network monitoring in optical communication systems using Reinforcement Learning (RL). Assuming a multi-domain architecture with limited domain visibility, we simulate multiple optical connections using an optical communications simulation software, GNPy, obtaining key network metrics to model the system. We developed two RL agents: the first agent selects near-optimal monitoring paths based on network states, and the second agent dynamically adapts its selected paths in response to state changes, such as fiber failures or issues with ROADMs. This adaptive approach allows for continuous improvement of network monitoring, ensuring resilience and efficient fault detection. …

Comparative Analysis Of Adversarial Permeability In Cpu-Native, Qat And Onnx-Based Quantized Transformer Models, Fahad Siddiqui

Master's Projects

This work explores securing and optimization of Transformer-based time series forecasting models. We employ several quantization techniques, including quantization-aware training (QAT), and tested the robustness of quantized models by adversarially attacking them. The preliminary results of this work, in our controlled setup, indicate that quantized models outperform the full precision model in terms of robustness against adversarial attacks. They achieved this robustness while showing a very minimal decrease in their forecasting performance.

Framework For Identity Privacy Through Gender Based Skeletonization, Harrison Hwang

Master's Projects

The protection of one’s privacy and sensitive information is becoming increasingly difficult in the modern age full of surveillance and data collection. Through the use of image based object detection machine learning models trained for human and facial recognition, people can be identified and tracked to a terrifyingly accurate degree. On the other hand, the information present in surveillance media can play a key role in security and law enforcement. This presents a problem of how to preserve key information without compromising the privacy of any individuals present in the video. In this research project, Computer Vision techniques and a …

Clustering Organ Cell Types, Venkata Satya Swathi Mattaparthi

Master's Projects

The Human Cell Atlas (HCA) created a reference map of all human cells. My project uses the Tabula Sapiens dataset, developed under HCA and based on single-cell RNA sequencing data, to explore cell type and tissue diversity. I performed experiments using the Elbow method and a formula based on dataset observations to determine the number of clusters, then applied k-means clustering on two representative subsets of the All Cells dataset. Clusters were selected for analysis using Shannon’s Diversity Index and Pielou’s Evenness. A novel algorithm based on the cell differentiation tree was used to validate the biological coherence of the …

Multilingual Sentiment Analysis Using Ensemble Learning, Farhan Ansari

Master's Projects

The widespread use of multiple social media platforms has amplified the expression of public opinions over the Internet in languages such as English, Hindi and Spanish. With the aid of technological advancements in machine learning, we can analyze opinions posted on the Internet and gauge public sentiments. There are organizations and businesses that are interested in the evaluation of these sentiments as these type of data can generally be used to obtain the opinion of a product, restaurant, a candidate, etc. In this study, we perform a comparative analysis of three popular ensemble learning methodologies (Boosting, Bagging and Stacking) based …

Enhancing Code Review Automation With Large Language Models Using Qlora Fine-Tuning And Rags, Sumukh Naveen Aradhya

Master's Projects

In this technological era where Artificial Intelligence and Machine Learning are revolutionizing various domains, Large Language Models (LLMs) are emerging as a very powerful tool. In the software development lifecycle, it is extremely important to have reliable code reviews to ensure security and maintain code quality. This project aims to survey various existing methodologies to aid creation of efficient code review automation agents and also research on ways to make this process more efficient. Parameter Efficient Fine-Tuning (PEFT) methodologies such as LoRA and QLoRA have been explored with an additional focus on a hybrid model that combines adaptive QLoRA with …

Large Language Models For Bacterial Genomic Analysis, Manvendra Chavan

Master's Projects

Identification of bacterial gene sequences with agricultural applications has the potential to transform agricultural biotechnology. These genes can be used in environmentally friendly pest control strategies. One such use case is identifying genes with potential insecticidal properties. With an increasing number of genomic information and decreasing numbers of available annotated sequences, finding new insecticidal genes has become more challenging.The traditional methods relying on sequence alignment and annotated databases are not effective in detecting functionally relevant genes lacking close homology to known cases. This project investigates the data-driven classification of genes by sequence modeling. This research is focused on learning DNA …

Genegate: Genetic Gating In A Mixture-Of-Experts For Real-Time Multi-Objective Traffic Signal Control, Rashmi Vishwanath Bhat

Master's Projects

Urban traffic signal control often needs to juggle between competing goals. It needs to minimize delays, reduce emissions, prevent crashes, and prioritize emergency vehicles all while the demand is constantly fluctuating. Traditional fixed-time or statically blended policies cannot reallocate priorities quickly when conditions change. We introduce GeneGate, a mixture-of-experts framework that uses a lightweight genetic gate to fuse four specialist controllers (throughput, emissions, safety, emergency) and adjusts their weights in real time. A short offline genetic search produces a robust initial blend, and an online micro-evolution step refines it every few cycles based on live traffic feedback. GeneGate’s adaptive gating …

Insider Threat Agent: A Behavioral Based Zero Trust Access Control Using Machine Learning Agent, Michael Fojude

College of Graduate Studies: Theses & Dissertations

Hybrid work, cloud adoption, and freely available AI‑enabled attack tools have exposed critical weaknesses in perimeter‑centric security. Current breach reports attribute more than one‑third of incidents to insider misuse or credential compromise, yet many organizations still depend on static Role‑ or Attribute‑Based Access Control that neither verifies intent continuously nor adapts to subtle behavioral change. This research addresses that gap by designing and validating a behavioral based Zero Trust Access Control (ZTAC) Agent. A five‑year enterprise log Dataset was extracted and cleansed to establish a high‑fidelity baseline of normal user behavior. Feature engineering captured temporal regularity (login sequence, session duration), …

Navigating Big Data In Cyber Archaeology: An Updated Four-Field Approach Applied To San Miceli, Jared Wilson

Dissertations

Problem

This dissertation examines the evolving role of digital technologies in archaeological research, focusing on the management and interpretation of extensive digital datasets generated by modern excavations. Drawing on six years of comprehensive fieldwork at San Miceli, Sicily, this study critically evaluates and updates the established four-field methodology proposed by Levy et al. (2012), encompassing acquisition, analysis, dissemination, and curation. While traditional archaeological documentation methods rely heavily on analog techniques, these approaches increasingly fall short due to the rapid expansion and complexity of digital data.

Method

To address this gap, the dissertation refines and expands the current methodological framework by …

Quantum-Resilient Architectures For Enterprise And Cloud Information Systems, Implications Of Quantum Computing For Enterprise Cybersecurity And Data Integrity, Manikantha Varaprasad Inakollu

Computer Science and Engineering Faculty Publications

The emergence of quantum computing presents unprecedented challenges to contemporary enterprise cybersecurity frameworks. Current cryptographic systems that protect sensitive data and secure communications will become vulnerable to quantum attacks within the next decade. This research examines the implications of quantum computing advancement for enterprise and cloud information systems, proposing quantum-resilient architectural frameworks that can withstand both classical and quantum threats. We analyze the timeline of quantum computing development, assess vulnerabilities in existing enterprise security infrastructures, and evaluate post-quantum cryptographic approaches suitable for organizational implementation. Through comparative analysis of quantum-resistant algorithms and architectural patterns, this study demonstrates that enterprises must begin …

Blockchain-Enabled Trust Frameworks For Enterprise Information Systems, Establishing Verifiable Trust In Distributed Organizational Environments, Manikantha Varaprasad Inakollu

Computer Science and Engineering Faculty Publications

Enterprise information systems increasingly operate in distributed environments where traditional trust mechanisms based on centralized authority prove insufficient. This research develops a comprehensive blockchain-enabled trust framework that establishes verifiable, decentralized trust mechanisms for enterprise systems operating across organizational boundaries. The study addresses critical gaps in current enterprise architectures where trust depends on centralized intermediaries, creating single points of failure and limiting inter-organizational collaboration. Through examination of existing trust models and blockchain capabilities, we propose an integrated framework that combines cryptographic verification, distributed consensus, and smart contract automation to establish trust without centralized control. Our framework enables organizations to verify data …

Detection Of Data Leakage And Disruption Of Covert Timing Channel In Secure Drone Communication Using Machine And Deep Learning, Jonathan Walatkiewicz

Master's Theses and Doctoral Dissertations

The utilization of recreational drones has experienced a substantial increase in both the United States and globally. However, it is noteworthy that most drones, classified as Internet of Things devices, are produced with a limited security lifecycle. This study's findings are of paramount importance, as traditional computing exploits can be applied to drones, designating them as high- value targets. This study examines the detectability and disruptability of covert timing channel traffic in secure drones. The investigation aims to ascertain the effects of multiple interarrival times, distances ranging from 1 to 330 feet, various detection algorithms, and stream sizes between 32-bit …

Motion Planning For A Flexible Modular Raft Robot, Chun-Yi She

Dartmouth College Master’s Theses

This thesis presents a hierarchical motion planning framework for SoftRafts, a modular and deformable aquatic robot capable of performing locomotion and manipulation tasks on water surfaces. SoftRafts consist of soft and rigid components that enable structural reconfiguration, offering adaptability in unstructured aquatic environments.

To address the complexity of planning in high-dimensional, deformable systems, the proposed method uses a bounding-shape abstraction, specifically, enclosing circles and rectangular bounding boxes to simplify motion planning. These enclosures abstract the robot's overall shape, reducing the high-dimensional planning problem into a lower-dimensional problem. A global planner uses a probabilistic roadmap (PRM) to compute a collision-free path …

Toward General Purpose Llms: From Domain Alignment To Multimodal And Multi-Agent Systems, Thang Nguyen

Dartmouth College Master’s Theses

Large Language Models have shown remarkable capabilities, but their generalization across domains, modalities, and collaborative settings remains limited. This work explores how LLMs can be adapted along three dimensions: domain specialization, multimodal processing, and multi-agent reasoning. First, we introduce a reward-guided retrieval mechanism that fine-tunes the retrieval component of a language model using preference-based supervision, improving response relevance in specialized domains. Building on this, we design a multi-agent framework for complex information-seeking tasks, where distinct agents handle query clarification, evidence extraction, and answer synthesis, enabling robust reasoning without additional model training. Extending beyond language, we investigate how LLMs can operate …