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Articles 19861 - 19890 of 25650
Full-Text Articles in Computer Engineering
Priority Preemption For Real-Time Application Qos Guarantees In Cooperative Vehicular Networks, Ting Zhou, Hamid Sharif, Michael Hempel, Puttipong Mahasukhon, Tao Ma, Pradhumna Shrestha
Priority Preemption For Real-Time Application Qos Guarantees In Cooperative Vehicular Networks, Ting Zhou, Hamid Sharif, Michael Hempel, Puttipong Mahasukhon, Tao Ma, Pradhumna Shrestha
Department of Electrical and Computer Engineering: Faculty Publications (to 2015)
Inter-vehicle and roadside-to-vehicle communications can contribute to a safer and more efficient driving experience by providing time-sensitive and location-aware information. However, its performance suffers from vehicle mobility, intermittent user connectivity, and wireless channel unreliability. In this paper, we propose a novel cross-layer optimization approach based on our Adaptive Distributed Cooperative Medium Access Control (ADC-MAC) protocol to guarantee the quality-of-service (QoS) of real-time applications. Markov chain based theoretical analysis show that our proposed priority preemption approach can improve the quality of a real-time application by guaranteeing its bandwidth and reducing its transmission latency.
Sub Pixel Analysis And Processing Of Sensor Data For Mobile Target Intelligence Information And Verification, Theresa Allen Williams
Sub Pixel Analysis And Processing Of Sensor Data For Mobile Target Intelligence Information And Verification, Theresa Allen Williams
Doctoral Dissertations
This dissertation introduces a novel process to study and analyze sensor data in order to obtain information pertaining to mobile targets at the sub-pixel level. The process design is modular in nature and utilizes a set of algorithmic tools for change detection, target extraction and analysis, super-pixel processing and target refinement. The scope of this investigation is confined to a staring sensor that records data of sub-pixel vehicles traveling horizontally across the ground. Statistical models of the targets and background are developed with noise and jitter effects. Threshold Change Detection, Duration Change Detection and Fast Adaptive Power Iteration (FAPI) Detection …
Semi-Automatic Management Of Knowledge Bases Using Formal Ontologies, Andreas Textor
Semi-Automatic Management Of Knowledge Bases Using Formal Ontologies, Andreas Textor
Theses
This thesis presents an approach that deals with the ever-growing amount of data in knowledge bases, especially concerning knowledge interoperability and formal representation of domain knowledge. There arc multiple issues that must be addressed with current systems. A multitude of different formats, sources and tools exist in a domain, and it is desirable to develop their use further towards a standardised environment. Such an environment should support both the representation and processing of data from this domain, and the connection to other domains, where necessary. In order to manage large amounts of data, it should be possible to perform whatever …
Survey On Cloud Forensics And Critical Criteria For Cloud Forensic Capability: A Preliminary Analysis, Keyun Ruan, Ibrahim Baggili, Joe Carthy, Tahar Kechadi
Survey On Cloud Forensics And Critical Criteria For Cloud Forensic Capability: A Preliminary Analysis, Keyun Ruan, Ibrahim Baggili, Joe Carthy, Tahar Kechadi
Electrical & Computer Engineering and Computer Science Faculty Publications
In this paper we present the current results and analysis of the survey “Cloud forensics and critical criteria for cloud forensic capability” carried out towards digital forensic experts and practitioners. This survey was created in order to gain a better understanding on some of the key questions of the new field - cloud forensics - before further research and development. We aim to understand concepts such as its definition, the most challenging issues, most valuable research directions, and the critical criteria for cloud forensic capability.
Cat Detect (Computer Activity Timeline Detection): A Tool For Detecting Inconsistency In Computer Activity Timelines, Andrew Marrington, Ibrahim Baggili, George Mohay, Andrew Clark
Cat Detect (Computer Activity Timeline Detection): A Tool For Detecting Inconsistency In Computer Activity Timelines, Andrew Marrington, Ibrahim Baggili, George Mohay, Andrew Clark
Electrical & Computer Engineering and Computer Science Faculty Publications
The construction of timelines of computer activity is a part of many digital investigations. These timelines of events are composed of traces of historical activity drawn from system logs and potentially from evidence of events found in the computer file system. A potential problem with the use of such information is that some of it may be inconsistent and contradictory thus compromising its value. This work introduces a software tool (CAT Detect) for the detection of inconsistency within timelines of computer activity. We examine the impact of deliberate tampering through experiments conducted with our prototype software tool. Based on the …
Technology Management Trends In Law Schools, Carol A. Watson, Larry Reeves
Technology Management Trends In Law Schools, Carol A. Watson, Larry Reeves
Articles, Chapters and Online Publications
Discusses the role of librarians in law school technology management and analyzes technology staffing survey results for 2002, 2006, and 2010. While survey results indicate a trend toward establishing separate information technology departments within law schools, librarians are and will continue to be actively involved in law school technology.
Predictive And Adaptive Game Development A Practical Application Of Development Models To The Independent Video Game Industry, Liam A. Hunt
Predictive And Adaptive Game Development A Practical Application Of Development Models To The Independent Video Game Industry, Liam A. Hunt
Theses : Honours
Through the process of researching a number of game and system development models, this study defines two archetypical development models - the predictive and the adaptive. Using each of these models, two video games have been developed in order to measure the practical effect that they can have on the design, development process and player experience of a game. Using the knowledge gained through playtesting and an analysis of the relationship between each game and its development methodology, a number of development guidelines and recommendations have been specifically constructed for use by independent games developers. The practical development and written …
Robotic Testing Of Proximal Tibio-Fibular Joint Kinematics For Measuring Instability Following Total Knee Arthroplasty, Wael K. Barsoum, Ho H. Lee, Trevor G. Murray, Robb Colbrunn, Alison K. Klika, S. Butler, Antonie J. Van Den Bogert
Robotic Testing Of Proximal Tibio-Fibular Joint Kinematics For Measuring Instability Following Total Knee Arthroplasty, Wael K. Barsoum, Ho H. Lee, Trevor G. Murray, Robb Colbrunn, Alison K. Klika, S. Butler, Antonie J. Van Den Bogert
Mechanical Engineering Faculty Publications
Pain secondary to instability in total knee arthroplasty (TKA) has been shown to be major cause of early failure. In this study, we focused on the effect of instability in TKA on the proximal tibio-fibular joint (PTFJ). We used a robotics model to compare the biomechanics of the PTFJ in the native knee, an appropriately balanced TKA, and an unbalanced TKA. The tibia (n = 5) was mounted to a six-degree-of-freedom force/torque sensor and the femur was moved by a robotic manipulator. Motion at the PTFJ was recorded with a high-resolution digital camera system. After establishing a neutral position, …
Multi-Pose Face Recognition And Tracking System, Binu Muraleedharan Nair, Jacob Foytik, Richard Tompkins, Yakov Diskin, Theus Aspiras, Vijayan K. Asari
Multi-Pose Face Recognition And Tracking System, Binu Muraleedharan Nair, Jacob Foytik, Richard Tompkins, Yakov Diskin, Theus Aspiras, Vijayan K. Asari
Electrical and Computer Engineering Faculty Publications
We propose a real time system for person detection, recognition and tracking using frontal and profile faces. The system integrates face detection, face recognition and tracking techniques. The face detection algorithm uses both frontal face and profile face detectors by extracting the 'Haar' features and uses them in a cascade of boosted classifiers. The pose is determined from the face detection algorithm which uses a combination of profile and frontal face cascades and, depending on the pose, the face is compared with a particular set of faces having the same range for classification. The detected faces are recognized by projecting …
Fluorinated Templates For Energy-Related Nanomaterials And Applications, Mohammed J. Meziani, Fushen Lu, Li Cao, Christopher E. Bunker, Elena A. Guliants, Ya-Ping Sun
Fluorinated Templates For Energy-Related Nanomaterials And Applications, Mohammed J. Meziani, Fushen Lu, Li Cao, Christopher E. Bunker, Elena A. Guliants, Ya-Ping Sun
Electrical and Computer Engineering Faculty Publications
Fluorinated ionomer membranes, as represented by the commercially available Nafion films, are macroscopically homogeneous and optically transparent but microscopically inhomogeneous with the presence of nanoscale hydrophilic cavities. These cavities serve as nanoscale reactors for the synthesis of nanoparticles from a variety of materials. The membranes with embedded nanoscale semiconductors, still optically transparent, have been used as sheet-photocatalysts for energy conversion applications, while those with embedded reactive metals used as nano-energetic materials for hydrogen generation and beyond. This chapter provides an overview on the templated synthesis of nanomaterials in fluorinated ionomer membranes and the various energy-related applications of this unique class …
Comparison Of Turbulence-Induced Scintillations For Multi-Wavelength Laser Beacons Over Tactical (7 Km) And Long (149 Km) Atmospheric Propagation Paths, Mikhail Vorontsov, Venkata S. Rao Gudimetla, Gary W. Carhart, Thomas Weyrauch, Svetlana Lachinova, Ernst Polnau, Joseph Rierson, Leonid A. Beresnev, Jony Jiang Liu, Jim F. Riker
Comparison Of Turbulence-Induced Scintillations For Multi-Wavelength Laser Beacons Over Tactical (7 Km) And Long (149 Km) Atmospheric Propagation Paths, Mikhail Vorontsov, Venkata S. Rao Gudimetla, Gary W. Carhart, Thomas Weyrauch, Svetlana Lachinova, Ernst Polnau, Joseph Rierson, Leonid A. Beresnev, Jony Jiang Liu, Jim F. Riker
Electrical and Computer Engineering Faculty Publications
We report results of the experimental analysis of atmospheric effects on laser beam propagation over two distinctive propagation paths: a long-range (149 km) propagation path between Mauna Loa (Island of Hawaii) and Haleakala (Island of Maui) mountains, and a tactical-range (7 km) propagation path between the roof of the Dayton Veterans Administration Medical Center (VAMC) and the Intelligent Optics Laboratory (IOL/UD) located on the 5th floor of the University of Dayton College Park Center building. Both testbeds include three laser beacons operating at wavelengths 532 nm, 1064 nm, and 1550 nm and a set of identical optical receiver systems with …
Obtaining Speech Assets For Judgement Analysis On Low-Pass Filtered Emotional Speech, John Snel, Charlie Cullen
Obtaining Speech Assets For Judgement Analysis On Low-Pass Filtered Emotional Speech, John Snel, Charlie Cullen
Conference papers
Investigating the emotional content in speech from acoustic characteristics requires separating the semantic con- tent from the acoustic channel. For natural emotional speech, a widely used method to separate the two channels is the use of cue masking. Our objective is to investigate the use of cue masking in non-acted emotional speech by analyzing the extent to which filtering impacts the perception of emotional content of the modified speech material. However, obtaining a corpus of emotional speech can be quite difficult whereby verifying the emotional content is an issue thoroughly discussed. Currently, speech research is showing a tendency toward constructing …
On Improving Electrooculogram-Based Computer Mouse Systems: The Accelerometer Trigger, Johnalan Keegan, Edward Burke, James Condron, Eugene Coyle
On Improving Electrooculogram-Based Computer Mouse Systems: The Accelerometer Trigger, Johnalan Keegan, Edward Burke, James Condron, Eugene Coyle
Conference Papers
Eye tracking is a well-established method of computer control for profoundly paralysed people (Anson et al., 2002). Cameras are commonly used to track eye movements (Morimoto et al., 2005) but one alternative is the bioelectrical signal known as the electrooculogram (EOG). There are some EOG mouse control systems that facilitate the use of GUI applications, but certain actions, which are straightforward using a conventional mouse, remain impossible. Unless the eyes are tracking a target, they move in saccades (jumps), making it impossible to voluntarily trace out smooth trajectories with one's gaze, as would be required to draw a smooth curve. …
Obtaining The Secondary Impedance Of Single-Sided Linear Induction Motor With A Double Layer Reaction Rail: A New Approach, Ali̇ Suat Gerçek, Vedat Mehmet Karsli
Obtaining The Secondary Impedance Of Single-Sided Linear Induction Motor With A Double Layer Reaction Rail: A New Approach, Ali̇ Suat Gerçek, Vedat Mehmet Karsli
Turkish Journal of Electrical Engineering and Computer Sciences
In the performance calculations of single-sided linear induction motor (SLIM),the equivalent circuit technique (ECT) is used. In this paper, a new approach is proposed for obtaining the secondary impedance of single-sided linear induction motor (SLIM) with a double layer reaction rail by using the layered secondary model. The proposed method improves the ECT technique by considering the saturation effect and the non-linear complex equivalent relative permeability. This study also examines the contributions of other electromagnetic effects, such as longitudinal end effect and transverse edge effect as well. Our method is applied to the SLIM and computed results of the method …
A Logic Method For Efficient Reduction Of The Space Complexity Of The Attribute Reduction Problem, Mehmet Hacibeyoğlu, Fati̇h Başçi̇ftçi̇, Şi̇rzat Kahramanli
A Logic Method For Efficient Reduction Of The Space Complexity Of The Attribute Reduction Problem, Mehmet Hacibeyoğlu, Fati̇h Başçi̇ftçi̇, Şi̇rzat Kahramanli
Turkish Journal of Electrical Engineering and Computer Sciences
The goal of attribute reduction is to find a minimal subset (MS) R of the condition attribute set C of a dataset such that R has the same classification power as C. It was proved that the number of MSs for a dataset with n attributes may be as large as (_{n/2}^n) and the generation of all of them is an NP-hard problem. The main reason for this is the intractable space complexity of the conversion of the discernibility function (DF) of a dataset to the disjunctive normal form (DNF). Our analysis of many DF-to-DNF conversion processes showed that approximately …
A Vision Based Feedback Mechanism For 6-Dof Stewart Platform, Utku Büyükşahi̇n
A Vision Based Feedback Mechanism For 6-Dof Stewart Platform, Utku Büyükşahi̇n
Turkish Journal of Electrical Engineering and Computer Sciences
Eyes are the most ubiquitous sensors of humankind. However, ``Vision Based Sensors" are not as common as what this fact would suggest. A survey of the previous work on image processing would reveal that the bulk of the research in this area have been conducted since the year 2000. These facts clearly show that image processing is the technology of our century, and is very open to further development. In this work, a system that combines a classical mechanism of the 20th century with the recent technology of the 21st century is presented and the design, theoretical background, the software …
Parallelizing Scale Invariant Feature Transform On A Distributed Memory Cluster, Stanislav Bobovych
Parallelizing Scale Invariant Feature Transform On A Distributed Memory Cluster, Stanislav Bobovych
Inquiry: The University of Arkansas Undergraduate Research Journal
Scale Invariant Feature Transform (SIFT) is a computer vision algorithm that is widely-used to extract features from images. We explored accelerating an existing implementation of this algorithm with message passing in order to analyze large data sets. We successfully tested two approaches to data decomposition in order to parallelize SIFT on a distributed memory cluster.
Experimental Analysis Of An Alternator Excited With Photovoltaic Cells For Small Power Plants, Kami̇l Ri̇fat İrfan Güney, Nevzat Onat
Experimental Analysis Of An Alternator Excited With Photovoltaic Cells For Small Power Plants, Kami̇l Ri̇fat İrfan Güney, Nevzat Onat
Turkish Journal of Electrical Engineering and Computer Sciences
In this study, an automatic voltage regulator fed by photovoltaic (PV) cells was designed for use in small power alternators. The design aimed to increase the energy output of the alternator and to ensure necessary current output from the PV cells to support the synchronous generator excitation system. For energy transformation from small renewable energy sources, designers have favored the use of alternators that produce higher quality electric power, rather than asynchronous generators. We also address the designed system's suitability for real-life application, examining the steady-state performance of the photovoltaic cell excited alternator (PVCEA) with various loads and its behavior …
Reactivation Of A Six-Degree-Of-Freedom Repeated Impact Machine Using Programmable Logical Controller (Plc), Cheng Lin
Engineering Technology Faculty Publications
Reactivation of a six-degree-of-freedom impact machine using Programmable Logical Control (PLC) is presented. The output from the machine is the history of accelerations collected from accelerometers attached at the testing article and a load cell mounted at the rubber pad where the impact occurs. Readings of the acceleration and impact force are sent to a PC for analysis through a data acquisition device (USB 6251) and Labview software provided by National Instrument (NI). Result shows that the machine can repeatedly generate an impact force up to eleven Gs. Demonstration of the project can be used as one of labs in …
Vehicular Ad Hoc Networks, Syed R. Rizvi, Stephan Olariu, Christina M. Oinotti, Shaharuddin Salleh, Mona E. Rizvi, Zainab Zaidi
Vehicular Ad Hoc Networks, Syed R. Rizvi, Stephan Olariu, Christina M. Oinotti, Shaharuddin Salleh, Mona E. Rizvi, Zainab Zaidi
Computer Science Faculty Publications
(First paragraph) Vehicular ad hoc networks (VANETs) have recently been proposed as one of the promising ad hoc networking techniques that can provide both drivers and passengers with a safe and enjoyable driving experience. VANETs can be used for many applications with vehicle-to-vehicle (V2V) and vehicle-to-infrastructure (V2I) communications. In the United States, motor vehicle traffic crashes are the leading cause of death for all motorists between two and thirty-four years of age. In 2009, the National Highway Traffic Safety Administration (NHTSA) reported that 33,808 people were killed in motor vehicle traffic crashes. The US Department of Transportation (US-DOT) estimates that …
Design And Evaluation Of A Query-Based Jamming Detection Algorithm For Wireless Sensor Networks, Murat Çakiroğlu, Ahmet Turan Özceri̇t
Design And Evaluation Of A Query-Based Jamming Detection Algorithm For Wireless Sensor Networks, Murat Çakiroğlu, Ahmet Turan Özceri̇t
Turkish Journal of Electrical Engineering and Computer Sciences
Jamming attacks, which are the main cause of data corruption and network blockages in wireless sensor networks (WSNs), are one of the most serious threats for WSNs. This type of attack not only blocks the ongoing communication in the network, but also causes the wireless nodes to exhaust their energy much earlier than expected. A countermeasure must be deployed against jamming attacks, especially in military and medical applications in which security breaches cannot be tolerated. In this paper, we have designed a new query-based jamming detection algorithm (QUJDA) to detect jamming attacks occurring in WSNs. QUJDA is an attack detection …
Line Detection With Adaptive Random Samples, Ali̇ Cafer Gürbüz
Line Detection With Adaptive Random Samples, Ali̇ Cafer Gürbüz
Turkish Journal of Electrical Engineering and Computer Sciences
This paper examines the detection of parameterized shapes in multidimensional noisy grayscale images. A novel shape detection algorithm utilizing random sample theory is presented. Although the method can be generalized, line detection is detailed. Each line in the image corresponds to a point in the line parameter space. The method creates hypothesis lines by randomly selecting parameter space points and tests the surrounding regions for acceptable linear features. The information obtained from each randomly selected line is used to update the parameter distribution, which reducesi the required number of random trials. The selected lines are re-estimated within a smaller search …
Automatic Knowledge Extraction For Filling In Biography Forms From Turkish Texts, İlknur Pehli̇van, Zeynep Orhan
Automatic Knowledge Extraction For Filling In Biography Forms From Turkish Texts, İlknur Pehli̇van, Zeynep Orhan
Turkish Journal of Electrical Engineering and Computer Sciences
This study presents a method for building an automatic knowledge extraction system for filling in biography forms from Turkish texts. Several biographies are analyzed in order to choose the set of biography categories to be studied. The fields of the biography form to be created are also defined based on this analysis. Information extraction techniques are used for implementation. A separate testing platform is designed to evaluate the accuracy of the extracted data. Results of the testing platform have shown this study to be a promising process to be further developed especially for creating forms in the Turkish language.
Neuro-Fuzzy Soft-Switching Hybrid Filter For Impulsive Noisy Environments, Şaban Özer, Hasan Zorlu
Neuro-Fuzzy Soft-Switching Hybrid Filter For Impulsive Noisy Environments, Şaban Özer, Hasan Zorlu
Turkish Journal of Electrical Engineering and Computer Sciences
In this study, a new soft-switching hybrid filter based on a neuro-fuzzy network for impulsive noisy environments is proposed. The hybrid filter was built by combining an adaptive finite impulse response (FIR) filter, an adaptive weighted myriad (WMy) filter, and a soft-switching mechanism based on a neuro-fuzzy (NF) network. Performance of the hybrid filter was tested in \alpha-stable noisy situations and compared with adaptive FIR, WMy, and weighted median (WMd) filter performances. According to the simulation results; the proposed hybrid filter has better performance than the adaptive FIR, WMy, and WMd filters, and has the ability of effectively suppressing the …
Simulation Of Storage Time Versus Reverse Bias Current For P^+N And Pin Diodes, Mehmet Serhat Keserli̇oğlu, Hasan Hüseyi̇n Erkaya
Simulation Of Storage Time Versus Reverse Bias Current For P^+N And Pin Diodes, Mehmet Serhat Keserli̇oğlu, Hasan Hüseyi̇n Erkaya
Turkish Journal of Electrical Engineering and Computer Sciences
In this study, the reverse-recovery behaviors of pin and p^+n diodes were simulated as a function of the reverse current and carrier lifetime. For this purpose, a 1-D simulation program was written to solve the semiconductor equations. MatLab partial differential equation solver was used. The reverse recovery response of pin and p^+n diodes was obtained for various values of a resistor in series and of carrier lifetime. The transient response for voltage and current was determined.
Co-Occurrence Matrix And Its Statistical Features As A New Approach For Face Recognition, Alaa Eleyan, Hasan Demirel
Co-Occurrence Matrix And Its Statistical Features As A New Approach For Face Recognition, Alaa Eleyan, Hasan Demirel
Turkish Journal of Electrical Engineering and Computer Sciences
In this paper, a new face recognition technique is introduced based on the gray-level co-occurrence matrix (GLCM). GLCM represents the distributions of the intensities and the information about relative positions of neighboring pixels of an image. We proposed two methods to extract feature vectors using GLCM for face classification. The first method extracts the well-known Haralick features from the GLCM, and the second method directly uses GLCM by converting the matrix into a vector that can be used in the classification process. The results demonstrate that the second method, which uses GLCM directly, is superior to the first method that …
Analysis Of Frequency Characteristics Of Electrical Arcs On The Insulating Sheath Of The Adss Fiber Optic Cables, Cengi̇z Polat Uzunoğlu, İbrahi̇m Güneş, Mukden Uğur
Analysis Of Frequency Characteristics Of Electrical Arcs On The Insulating Sheath Of The Adss Fiber Optic Cables, Cengi̇z Polat Uzunoğlu, İbrahi̇m Güneş, Mukden Uğur
Turkish Journal of Electrical Engineering and Computer Sciences
The insulating outer-sheath of ADSS (All dielectric self supporting) cables used on high voltage transmission lines are often subjected to various environmental effects. The ageing process of cable sheath can be investigated by using the dry-band arcing test method under laboratory conditions. Dry-band arcing is the most common technique to determine the ageing period of insulating materials. Environmental effects such as rain, humidity, dew and ice produce various amounts of wet regions on the cable surface. Electrical arcs and hence degradations are occurred on the cable surface due to the enhanced electrical field with formation of wet regions. In this …
Cooperative Diversity With Continuous Phase Modulation, Ni̇yazi̇ Odabaşioğlu
Cooperative Diversity With Continuous Phase Modulation, Ni̇yazi̇ Odabaşioğlu
Turkish Journal of Electrical Engineering and Computer Sciences
In recent years, there has been a vast amount of research on cooperative diversity due to its potential capacity increase. Almost all of the research has been based on linear modulation formats such as phase-shift keying (PSK) or quadrature amplitude modulation (QAM). On the other hand, continuous phase modulation (CPM) promises impressive advantages relative to linear modulations for wireless communication systems. In this paper, a cooperative diversity scheme with space-time coded (STC) CPM is introduced. Both amplify-and-forward (AF) and decode-and-forward (DF) modes were considered for cooperation. Simulation results showed that the proposed system is very suitable for wireless fading channels, …
Adaptive Wiener-Turbo Systems With Jpeg & Bit Plane Compressions In Image Transmission, Ersi̇n Göse
Adaptive Wiener-Turbo Systems With Jpeg & Bit Plane Compressions In Image Transmission, Ersi̇n Göse
Turkish Journal of Electrical Engineering and Computer Sciences
In recent years, for transmission of 2D colored images over the fading channels, a new scheme has been denoted as ``adaptive Wiener-turbo systems with JPEG & bit plane compressions'' (AW-TSwJBC). In this paper, the performance of AW-TSwJBC is introduced over Rician and Rayleigh fading channels. We benefited from the neighborhood relation of pixels for each color plane by using a new iterative block, the ``adaptive Wiener-turbo'' scheme, which employs a turbo decoder, JPEG encoder/decoders, and adaptive Wiener filtering. In our approach, we could also alter compression ratios due to the importance of the image to be transferred. Based on the …
Sequence Alignment From The Perspective Of Stochastic Optimization: A Survey, İhsan Ömür Bucak, Volkan Uslan
Sequence Alignment From The Perspective Of Stochastic Optimization: A Survey, İhsan Ömür Bucak, Volkan Uslan
Turkish Journal of Electrical Engineering and Computer Sciences
DNA and protein are the fundamental biological sequences. DNA is a fundamental molecule that plays a vital role in the processes of life. Proteins synthesized by DNA in a cell are the building blocks of every living organism. There is a variety of reasons behind the alignment of biological sequences. Biological sequence alignment helps to discover functional and structural similarity of sequences. Biologists work with these aligned sequences to construct phylogenetic trees, characterize protein families, and predict protein structure. Sequence alignment is an extremely promising field of research that is characterized by very high computational complexity. Stochastic optimization is needed …