Computer Engineering Commons^™

A Hierarchical Framework For Phylogenetic And Ancestral Genome Reconstruction On Whole Genome Data, Lingxi Zhou

Theses and Dissertations

Gene order gets evolved under events such as rearrangements, duplications, and losses, which can change both the order and content along the genome, through the long history of genome evolution. Recently, the accumulation of genomic sequences provides researchers with the chance to handle long-standing problems about the phylogenies, or evolutionary histories, of sets of species, and ancestral genomic content and orders. Over the past few years, such problems have been proven so interesting that a large number of algorithms have been proposed in the attempt to resolve them, following different standards. The work presented in this dissertation focuses on algorithms …

Integrating A Simple Traffic Incident Model For Rapid Evacuation Analysis, Andrew J. Collins, R. Michael Robinson, Peter Foytik, Craig Jordan, Barry C. Ezell

VMASC Publications

Road transportation networks are a segment of society's critical infrastructure particularly susceptible to service disruptions. Traffic incidents disrupt road networks by producing blockages and increasing travel times, creating significant impacts during emergency events such as evacuations. For this reason, it is extremely important to incorporate traffic incidents in evacuation planning models. Emergency managers and decision makers need tools that enable rapid assessment of multiple, varied scenarios. Many evacuation simulations require high-fidelity data input making them impractical for rapid deployment by practitioners. Since there is such variation in evacuation types and the method of disruption, evacuation models do not require the …

Per-Pixel Calibration For Rgb-Depth Natural 3d Reconstruction On Gpu, Sen Li

Theses and Dissertations--Electrical and Computer Engineering

Ever since the Kinect brought low-cost depth cameras into consumer market, great interest has been invigorated into Red-Green-Blue-Depth (RGBD) sensors. Without calibration, a RGBD camera’s horizontal and vertical field of view (FoV) could help generate 3D reconstruction in camera space naturally on graphics processing unit (GPU), which however is badly deformed by the lens distortions and imperfect depth resolution (depth distortion). The camera’s calibration based on a pinhole-camera model and a high-order distortion removal model requires a lot of calculations in the fragment shader. In order to get rid of both the lens distortion and the depth distortion …

Learning Hierarchically Decomposable Concepts With Active Over-Labeling, Yuji Mo, Stephen Scott, Doug Downey

School of Computing: Conference and Workshop Papers

Many classification tasks target high-level concepts that can be decomposed into a hierarchy of finer-grained subconcepts. For example, some string entities that are Locations are also Attractions, some Attractions are Museums, etc. Such hierarchies are common in named entity recognition (NER), document classification, and biological sequence analysis. We present a new approach for learning hierarchically decomposable concepts. The approach learns a high-level classifier (e.g., location vs. non-location) by seperately learning multiple finer-grained classifiers (e.g., museum vs. non-museum), and then combining the results. Soliciting labels at a finer level of granularity than that of the target concept is a new approach …

Anisotropy, Band-To-Band Transitions, Phonon Modes, And Oxidation Properties Of Cobalt-Oxide Core-Shell Slanted Columnar Thin Films, Alyssa Mock, Rafał Korlacki, Chad Briley, Derek Sekora, Tino Hofmann, Peter Wilson, Alexander Sinitskii, Eva Schubert, Mathias Schubert

Department of Electrical and Computer Engineering: Faculty Publications

Highly ordered and spatially coherent cobalt slanted columnar thin films (SCTFs) were deposited by glancing angle deposition onto silicon substrates, and subsequently oxidized by annealing at 475˚C. Scanning electron microscopy, Raman scattering, generalized ellipsometry, and density functional theory investigations reveal shape-invariant transformation of the slanted nanocolumns from metallic to transparent metal-oxide core-shell structures with properties characteristic of spinel cobalt oxide. We find passivation of Co-SCTFs yielding Co-Al₂O₃ core-shell structures produced by conformal deposition of a few nanometers of alumina using atomic layer deposition fully prevents cobalt oxidation in ambient and from annealing up to 475˚C.

Sticking With The Pointy End? Molecular Configuration Of Chloro Boron-Subphthalocyanine On Cu(111), Nahid Ilyas, Shashank S. Harivyasi, Percy Zahl, Rocio Cortes, Oliver T. Hofmann, Peter Sutter, Egbert Zojer, Oliver L. A. Monti

Department of Electrical and Computer Engineering: Faculty Publications

In this combined low-temperature scanning tunneling microscopy (STM) and density functional theory (DFT) study, we investigate self-assembly of the dipolar nonplanar organic semiconductor chloro boron-subphthalocyanine (ClB-SubPc) on Cu(111). We observe multiple distinct adsorption configurations and demonstrate that these can only be understood by taking surface-catalyzed dechlorination into account. A detailed investigation of possible adsorption configurations and the comparison of experimental and computational STM images demonstrates that the configurations correspond to “Cl-up” molecules with the B− Cl moiety pointing toward the vacuum side of the interface, and dechlorinated molecules. In contrast to the standard interpretation of adsorption of nonplanar molecules in …

Detecting Microbial Dysbiosis Associated With Pediatric Crohn Disease Despite The High Variability Of The Gut Microbiota, Feng Wang, Jess L. Kaplan, Benjamin D. Gold, Manoj K. Bhasin, Naomi L. Ward, Richard Kellermayer, Barbara S. Kirschner, Melvin B. Heyman, Scot E. Dowd, Stephen B. Cox, Haluk Dogan, Blaire Steven, George Ferry, Stanley A. Cohen, Robert N. Baldassano, Christopher J. Moran, Elizabeth A. Garnett, Lauren Drake, Hasan H. Otu, Leonid A. Mirny, Towia A. Libermann, Harland S. Winter, Kirill S. Korolev

Department of Electrical and Computer Engineering: Faculty Publications

The relationship between the host and its microbiota is challenging to understand because both microbial communities and their environments are highly variable. We have developed a set of techniques based on population dynamics and information theory to address this challenge. These methods identify additional bacterial taxa associated with pediatric Crohn disease and can detect significant changes in microbial communities with fewer samples than previous statistical approaches required. We have also substantially improved the accuracy of the diagnosis based on the microbiota from stool samples, and we found that the ecological niche of a microbe predicts its role in Crohn disease. …

A Survey Of Wireless Communication Technologies & Their Performance For High Speed Railways, Subharthi Banerjee, Michael Hempel, Hamid Sharif

Department of Electrical and Computer Engineering: Faculty Publications

High Speed Railway (HSR) provides its customers not only safety, security, comfort and on-time commuting, but also a fast transportation alternative to air travel or regular passenger rail services. Providing these benefits would not be possible without the tremendous growth and prevalence of wireless communication technologies. Due to advances in wireless communication systems, both trains and passengers are connected through high speed wireless networks to the Internet, data centers and railroad control centers. Railroad communities, academia, related industries and standards bodies, even the European Space Agency, are involved in advancing developments of HSR for highly connected train communication systems. The …

Hybrid Quantum Dot-Tin Disulfide Field-Effect Transistors With Improved Photocurrent And Spectral Responsivity, Yuan Huang, Huidong Zang, Jia -Shiang Chen, Eli Sutter, Peter Sutter, Chang- Yong Nam, Mircea Cotlet

Department of Electrical and Computer Engineering: Faculty Publications

We report an improved photosensitivity in few-layer tin disulfide (SnS2) field-effect transistors (FETs) following doping with CdSe/ZnS core/shell quantum dots (QDs). The hybrid QD-SnS₂ FET devices achieve more than 500% increase in the photocurrent response compared with the starting SnS₂-only FET device and a spectral responsivity reaching over 650 A/W at 400 nm wavelength. The negligible electrical conductance in a control QD-only FET device suggests that the energy transfer between QDs and SnS₂ is the main mechanism responsible for the sensitization effect, which is consistent with the strong spectral overlap between QD photoluminescence and SnS_{2 …}

Broadband Compact Microstrip Patch Antenna Design Loaded By Multiple Split Ring Resonator Superstrate And Substrate, Shobhit K. Patel, Christos Argyropoulos, Yogeshwar P. Kosta

Department of Electrical and Computer Engineering: Faculty Publications

We present microstrip patch antenna loaded with multiple split ring resonator substrate and superstrate. We analyze how the loading of split ring resonator superstrate and substrate can improve the bandwidth compared to the simple microstrip patch antenna and microstrip patch antenna loaded with split ring resonator superstrate. Another important observation is made for multiple split ring resonator loading in superstrate and substrate of microstrip patch antenna. The design is compared for two, three, and four-ring split ring resonator loading. The designs are also compared for different gap spacing between the rings. All three designs are compared for small gap and …

Meta-Analysis Of Transcriptome Data Identifies A Novel 5-Gene Pancreatic Adenocarcinoma Classifier, Manoj K. Bhasin, Kenneth Ndebele, Octavian Bucur, Eric U. Yee, Hasan H. Otu, Jessica Plati, Andrea Bullock, Xuesong Gu, Eduardo Castan, Peng Zhang, Robert Najarian, Maria S. Muraru, Rebecca Miksad, Roya Khosravi-Far, Towia A. Libermann

Department of Electrical and Computer Engineering: Faculty Publications

Purpose: Pancreatic ductal adenocarcinoma (PDAC) is largely incurable due to late diagnosis. Superior early detection biomarkers are critical to improving PDAC survival and risk stratification.

Experimental Design: Optimized meta-analysis of PDAC transcriptome datasets identified and validated key PDAC biomarkers. PDAC-specific expression of a 5-gene biomarker panel was measured by qRT-PCR in microdissected patient-derived FFPE tissues. Cell-based assays assessed impact of two of these biomarkers, TMPRSS4 and ECT2, on PDAC cells.

Results: A 5-gene PDAC classifier (TMPRSS4, AHNAK2, POSTN, ECT2, SERPINB5) achieved on average 95% sensitivity and 89% specificity in discriminating PDAC from non-tumor samples in four training sets and similar …

Special Issue On Survivable And Resilient Communication Networks And Services, Eytan Modiano, Rudra Dutta, Yi Qian

Department of Electrical and Computer Engineering: Faculty Publications

Communication networks and services play a vital role in our modern lives. This importance is expected to continue to grow in future decades. More and more business, healthcare or government organizations will become increasingly dependent on the communication between their offices and people. Not only does modern society depend on these services in terms of availability but also in terms of proper functioning in all circumstances. These services having stringent requirements with respect to protection of privacy and security. Anonymity (such as e-health) cannot accept, for example, temporary leakage of confidential information by accident whether a result of human error …

Coordinate-Invariant Lyddane-Sachs-Teller Relationship For Polar Vibrations In Materials With Monoclinic And Triclinic Crystal Systems, Mathias Schubert

Department of Electrical and Computer Engineering: Faculty Publications

A coordinate-invariant generalization of the Lyddane-Sachs-Teller relation is presented for polar vibrations in materials with monoclinic and triclinic crystal systems. The generalization is derived from an eigendielectric displacement vector summation approach, which is equivalent to the microscopic Born-Huang description of polar lattice vibrations in the harmonic approximation. An expression for a general oscillator strength is also described for materials with monoclinic and triclinic crystal systems. A generalized factorized form of the dielectric response characteristic for monoclinic and triclinic materials is proposed. The generalized Lyddane-Sachs-Teller relation is found valid for monoclinic β-Ga2O3, where accurate experimental data became available recently from a …

Dst Approach To Enhance Audio Quality On Lost Audio Packet Steganography, Qilin Qi, Dongming Peng, Hamid Sharif

Department of Electrical and Computer Engineering: Faculty Publications

Lost audio packet steganography (LACK) is a steganography technique established on the VoIP network. LACK provides a high-capacity covert channel over VoIP network by artificially delaying and dropping a number of packets in use to convey stegnogram. However, the increasing loss of packets will hurt the quality of the VoIP service. The quality deterioration will not only affect the legitimate VoIP service but also constrain the capacity of the covert channel. Discrete spring transform (DST) is proven to be a way to eliminate the perceptual redundancy in the multimedia signal. In this paper, the DST is applied on the LACK …

Embeddable Advanced Sensors For Harsh Environment Sensing Applications, Lei Yuan, Yinan Zhang, Yan Lu, Xiaobei Zhang, Mengmeng Wang

Department of Electrical and Computer Engineering: Faculty Publications

Research and development in advanced sensors with embedded monitoring capability have experienced significant growth in recent years, fueled by their broad applications in real-time measurement of a wide variety of physical, chemical, and biological quantities. Compared with conventional sensors with bulky assemblies, recent progress in 3D manufacturing technologies (e.g., ultrafast laser micromachining and additive manufacturing) has opened up a new avenue in one-step fabrication of assembly-freemicro devices in various materials as well as the development of compact, customized, and intricate smart structures/components. The merits of these advanced manufacturing techniques enable the integration of embeddable advanced sensors into smart structures and …

A Wideband And Polarization-Independent Metasurface Based On Phase Optimization For Monostatic And Bistatic Radar Cross Section Reduction, Jianxun Su, Yao Lu, Zengrui Li, Rongrong Zhang, Yaoqing (Lamar) Yang

Department of Electrical and Computer Engineering: Faculty Publications

A broadband and polarization-independent metasurface is analyzed and designed for both monostatic and bistatic radar cross section (RCS) reduction in this paper. Metasurfaces are composed of two types of electromagnetic band-gap (EBG) lattice, which is a subarray with “0” or “𝜋” phase responses, arranged in periodic and aperiodic fashions. A new mechanism is proposed for manipulating electromagnetic (EM) scattering and realizing the best reduction of monostatic and bistatic RCS by redirecting EM energy to more directions through controlling the wavefront of EMwave reflected from the metasurface. Scattering characteristics of two kinds of metasurfaces, periodic arrangement and optimized phase layout, are …

A Wideband End-Fire Conformal Vivaldi Antenna Array Mounted On A Dielectric Cone, Zengrui Li, Xiaole Kang, Jianxun Su, Qingxin Guo, Yaoqing (Lamar) Yang, Junhong Wang

Department of Electrical and Computer Engineering: Faculty Publications

The characteristics of a novel antipodal Vivaldi antenna array mounted on a dielectric cone are presented. By employing antipodal Vivaldi antenna element, the antenna array shows ultrawide bandwidth and end-fire radiation characteristics.Our simulations show that the cone curvature has an obvious influence on the performance of the conformal antenna, in terms of both the bandwidth and the radiation patterns. The thickness and permittivity of the dielectric cone have an effect on the bandwidth of the conformal antenna. Measurement results of both single antenna and conformal antenna array show a good agreement with the simulated results. The measured conformal antenna can …

In-Field Fuel Use And Load States Of Agricultural Field Machinery, Santosh Pitla, Joe D. Luck, Jared Werner, Nannan Lin, Scott A. Shearer

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The ability to define in-field tractor load states offers the potential to better specify and characterize fuel consumption rate for various field operations. For the same field operation, the tractor experiences diverse load demands and corresponding fuel use rates as it maneuvers through straight passes, turns, suspended operation for adjustments, repair and maintenance, and biomass or other material transfer operations. It is challenging to determine the actual fuel rate and load states of agricultural machinery using force prediction models, and hence, some form of in-field data acquisition capability is required. Controller Area Networks (CAN) available on the current model tractors …

Trends In Commercial-Off-The-Shelf Vs. Proprietary Applications, Vijay K. Agrawal, Vipin K. Agrawal, A. Ross Taylor

Journal of International Technology and Information Management

This study examines factors valued by IS managers in deciding if COTS software is a viable alternative to proprietary software. The results indicate managers who anticipate increased usage of COTS packages in 5 years used the same top three factors in the formation of their decisions to adopt COTS as their colleagues who anticipated either zero change in COTS usage or an increased usage of proprietary software used in deciding not to adopt COTS software. Managers anticipating increased COTS usage had a statistically significant higher value for each of those items compared to managers not anticipating growth in COTS software.

Online Trust Cues: Perceptions And Application, Antonina A. Bauman

Journal of International Technology and Information Management

This qualitative study analyzes perceptions of online trust cues as identified by shoppers from three countries: Germany, Russia, and the USA. A novel approach of the repertory grid method is used to study online trust cues in business-to-consumers commercial online transactions. This study resulted in the list of web site elements and features that consumers recognize as trust cues and use to evaluate e-vendor’s trustworthiness. Findings show that out of fourteen categories of online trust cues, identified by online shoppers, three categories of online trust cues are found to be common across three cultures while eleven categories are culture specific. …

Evaluation Of Classification And Ensemble Algorithms For Bank Customer Marketing Response Prediction, Olatunji Apampa

Journal of International Technology and Information Management

This article attempts to improve the performance of classification algorithms used in the bank customer marketing response prediction of an unnamed Portuguese bank using the Random Forest ensemble. A thorough exploratory data analysis (EDA) was conducted on the data in order to ascertain the presence of anomalies such as outliers and extreme values. The EDA revealed that the bank data had 45, 211 instances and 17 features, with 11.7% positive responses. This was in addition to the detection of outliers and extreme values. Classification algorithms used for modelling the bank dataset include; Logistic Regression, Decision Tree, Naïve Bayes and the …

The Perceived Business Benefit Of Cloud Computing: An Exploratory Study, Thomas Chen, Ta-Tao Chuang, Kazuo Nakatani

Journal of International Technology and Information Management

The objective of the research is to study the benefits of cloud computing perceived by adopters and examine the impact of moderating factors on the relationship between the type of cloud computing and the perceived benefit. The moderating factors include firm size and value-chain activities. A measurement instrument of a 5-point Likert scale was administered on businesses of different sizes in Taiwan. The benefit of cloud computing measured in the study were: cost reduction, improved capability and enhanced scalability. The results show that the perceived benefit of cloud computing varies depending on the type of cloud computing, the value chain …

Teaching Robot Kinematics For Engineering Technology Students Using A Created Three-Dimensional Robot And Camera, Cheng Y. Lin, Yuzhong Shen

Engineering Technology Faculty Publications

Teaching robot kinematics is important to engineering technology students in the robot automation. The study can help students not only in the coordinate transformation principles from a joint to its following joint in a robot, but also in relating the coordinate systems between a robot and a machine vision system. While students can utilize math software to compute robot kinematic transformations, they have problems verifying their answers. In this paper, a three dimensional vertically articulated robot is created to help students visualize the location and orientation of the end effector. Students can check their robot kinematic answers based on the …

Fog Computing With Go: A Comparative Study, Ellis H. Butterfield

CMC Senior Theses

The Internet of Things is a recent computing paradigm, de- fined by networks of highly connected things – sensors, actuators and smart objects – communicating across networks of homes, buildings, vehicles, and even people. The Internet of Things brings with it a host of new problems, from managing security on constrained devices to processing never before seen amounts of data. While cloud computing might be able to keep up with current data processing and computational demands, it is unclear whether it can be extended to the requirements brought forth by Internet of Things.

Fog computing provides an architectural solution to …

Recognizing Pain Using Novel Simulation Technology, Justin C. Grace

Honors Undergraduate Theses

Effective pain management and time to treatment is essential in patient care. Despite scientific evidence supporting the need to treat pain and an emphasis on addressing pain as a priority, pain management continues to be an unresolved issue. As a member of the health care team, nurses are integral to optimal pain management. Currently, nursing schools have limited innovative or alternative methods for teaching pain assessment and management. Simulation in nursing education provides a unique opportunity to expose students to realistic patient situations and allow them to learn and make mistakes without causing harm. However, modern low- and high-fidelity simulation …

Probabilistic-Based Computing Transformation With Reconfigurable Logic Fabrics, Mohammed Alawad

Electronic Theses and Dissertations

Effectively tackling the upcoming "zettabytes" data explosion requires a huge quantum leap in our computing power and energy efficiency. However, with the Moore's law dwindling quickly, the physical limits of CMOS technology make it almost intractable to achieve high energy efficiency if the traditional "deterministic and precise" computing model still dominates. Worse, the upcoming data explosion mostly comprises statistics gleaned from uncertain, imperfect real-world environment. As such, the traditional computing means of first-principle modeling or explicit statistical modeling will very likely be ineffective to achieve flexibility, autonomy, and human interaction. The bottom line is clear: given where we are headed, …

Distributed Rule-Based Ontology Reasoning, Raghava Mutharaju

Browse all Theses and Dissertations

The vision of the Semantic Web is to provide structure and meaning to the data on the Web. Knowledge representation and reasoning play a crucial role in accomplishing this vision. OWL (Web Ontology Language), a W3C standard, is used for representing knowledge. Reasoning over the ontologies is used to derive logical consequences. A fixed set of rules are run on an ontology iteratively until no new logical consequences can be derived. All existing reasoners run on a single machine, possibly using multiple cores. Ontologies (sometimes loosely referred to as knowledge bases) that are automatically constructed can be very large. Single …

Customizable 3-D Virtual Gi Tract Systems For Locating, Mapping, And Navigation Inside Human Gastrointestinal Tract, Megha Dattatrey Dalvi

Browse all Theses and Dissertations

One of the critical challenges of wireless capsule endoscopy examination is to find the exact position of the capsule in the Gastrointestinal Tract (GI) tract so as to correctly and accurately spot the position of the intestinal diseases. Creating a 3D virtual GI tract system could significantly improve the capsule endoscopy operations. The virtual human model, such as the BioDigital Human, has been credited as Google Earth for the human body, which provides us medically accurate virtual body and organ structures. However, it only assembles a “Standard” human body. The problem is: there is only one earth, but billions of …

Augment Hololens’ Body Recognition And Tracking Capabilities Using Kinect, Krishna Chaithanya Mathi

Browse all Theses and Dissertations

In this thesis, we are primarily interested in exploring the HoloLens technologies for medical practices. Particularly, we will address the limitation of HoloLens’ capability in human body sensing, recognition and tracking. We will then introduce and demonstrate the use of Kinect to augment HoloLens’ sensory and processing capabilities in order to produce time and space-synchronized immersive environment with both virtual body and real body of the same patient for supporting distributed medical collaborations. Specifically, we are looking at a distributed solution in which we are collecting the patient body data from Kinect, followed by body recognition and position/motion tracking processing …

Novel Cost And Space Efficient Range Of Motion And Gait Analysis Systems, Rutvik Bharatkumar Patel

Browse all Theses and Dissertations

In this thesis, we have explored the use of the latest motion tracking technologies, as evident by Microsoft Xbox Kinect’s motion tracking capabilities, in combination with 3D digital human modeling and animation, multi-modality image capturing and processing, and fusion, to design a new generation of low-cost range of motion and gait analysis solutions that overcome the limitation of existing tools. The proposed solutions and our prototype systems have demonstrated accurate measurements and reliable analysis outcome compared to current clinic practices, with significantly reduced complexity and cost. Furthermore, it eliminates the need for expensive effort for pre- and post- processing of …