Computer Engineering Commons^™

Novel Applications Of Machine Learning In Bioinformatics, Yi Zhang

Theses and Dissertations--Computer Science

Technological advances in next-generation sequencing and biomedical imaging have led to a rapid increase in biomedical data dimension and acquisition rate, which is challenging the conventional data analysis strategies. Modern machine learning techniques promise to leverage large data sets for finding hidden patterns within them, and for making accurate predictions. This dissertation aims to design novel machine learning-based models to transform biomedical big data into valuable biological insights. The research presented in this dissertation focuses on three bioinformatics domains: splice junction classification, gene regulatory network reconstruction, and lesion detection in mammograms.

A critical step in defining gene structures and mRNA …

Automated Network Security With Exceptions Using Sdn, Sergio A. Rivera Polanco

Theses and Dissertations--Computer Science

Campus networks have recently experienced a proliferation of devices ranging from personal use devices (e.g. smartphones, laptops, tablets), to special-purpose network equipment (e.g. firewalls, network address translation boxes, network caches, load balancers, virtual private network servers, and authentication servers), as well as special-purpose systems (badge readers, IP phones, cameras, location trackers, etc.). To establish directives and regulations regarding the ways in which these heterogeneous systems are allowed to interact with each other and the network infrastructure, organizations typically appoint policy writing committees (PWCs) to create acceptable use policy (AUP) documents describing the rules and behavioral guidelines that all campus network …

Depth Enhancement And Surface Reconstruction With Rgb/D Sequence, Xinxin Zuo

Theses and Dissertations--Computer Science

Surface reconstruction and 3D modeling is a challenging task, which has been explored for decades by the computer vision, computer graphics, and machine learning communities. It is fundamental to many applications such as robot navigation, animation and scene understanding, industrial control and medical diagnosis. In this dissertation, I take advantage of the consumer depth sensors for surface reconstruction. Considering its limited performance on capturing detailed surface geometry, a depth enhancement approach is proposed in the first place to recovery small and rich geometric details with captured depth and color sequence. In addition to enhancing its spatial resolution, I present a …

Shaping The Future Of Trusted Digital Identity: The Idef Registry With Health Information Use Cases, Noreen Y. Whysel

Publications and Research

No abstract provided.

Distance,Time And Terms In First Story Detection, Fei Wang

Doctoral

First Story Detection (FSD) is an important application of online novelty detection within Natural Language Processing (NLP). Given a stream of documents, or stories, about news events in a chronological order, the goal of FSD is to identify the very first story for each event. While a variety of NLP techniques have been applied to the task, FSD remains challenging because it is still not clear what is the most crucial factor in defining the “story novelty”. Giventhesechallenges,thethesisaddressedinthisdissertationisthat the notion of novelty in FSD is multi-dimensional. To address this, the work presented has adopted a three dimensional analysis of the …

Music Information Retrieval For Irish Traditional Music Automatic Analysis Of Harmonic, Rhythmic, And Melodic Features For Efficient Key-Invariant Tune Recognition, Pierre Beauguitte

Doctoral

Music making and listening practices increasingly rely on techno logy,and,asaconsequence,techniquesdevelopedinmusicinformation retrieval (MIR) research are more readily available to end users, in par ticular via online tools and smartphone apps. However, the majority of MIRresearchfocusesonWesternpopandclassicalmusic,andthusdoes not address specificities of other musical idioms. Irishtraditionalmusic(ITM)ispopularacrosstheglobe,withregular sessionsorganisedonallcontinents. ITMisadistinctivemusicalidiom, particularly in terms of heterophony and modality, and these character istics can constitute challenges for existing MIR algorithms. The bene fitsofdevelopingMIRmethodsspecificallytailoredtoITMisevidenced by Tunepal, a query-by-playing tool that has become popular among ITM practitioners since its release in 2009. As of today, Tunepal is the state of the art for tune recognition in ITM. The research in …

Enhancing Synchrony In Multiplex Network Due To Rewiring Frequency, Sarbendu Rakshit, Bidesh K. Bera, Jürgen Kurths, Dibakar Ghosh

Journal Articles

Most of the previous studies on synchrony in multiplex networks have been investigated using different types of intralayer network architectures which are either static or temporal. Effect of a temporal layer on intralayer synchrony in a multilayered network still remains elusive. In this paper, we discuss intralayer synchrony in a multiplex network consisting of static and temporal layers and how a temporal layer influences other static layers to enhance synchrony simultaneously. We analytically derive local stability conditions for intralayer synchrony based on the master stability function approach. The analytically derived results are illustrated by numerical simulations on up to five-layers …

Cache Pressure-Aware Caching Scheme For Content-Centric Networking, Xi Luo, Ying An

Turkish Journal of Electrical Engineering and Computer Sciences

Content centric networking (CCN) is a new networking paradigm to meet the growing demand for content access in the future. Because of its important role in accelerating content retrieval and reducing network transmission load, in-network caching has become one of the core technologies in CCN and has attracted wide attention. The existing caching schemes often lack sufficient consideration of node cache status and the temporal validity of user requests, and thus the cache efficiency of the network is greatly reduced. In this paper, a cache pressure-aware caching scheme is proposed, which comprehensively takes into account various factors such as content …

Word Sense Disambiguation Using Semantic Kernels With Class-Based Term Values, Ayşe Berna Altinel, Murat Can Gani̇z, Bi̇lge Şi̇pal, Eren Can Erkaya, Onur Can Yücedağ, Muhammed Ali̇ Doğan

Turkish Journal of Electrical Engineering and Computer Sciences

In this study, we propose several semantic kernels for word sense disambiguation (WSD). Our approaches adapt the intuition that class-based term values help in resolving ambiguity of polysemous words in WSD. We evaluate our proposed approaches with experiments, utilizing various sizes of training sets of disambiguated corpora (SensEval). With these experiments we try to answer the following questions: 1.) Do our semantic kernel formulations yield higher classification performance than traditional linear kernel?, 2.) Under which conditions a kernel design performs better than others?, 3.) Does the addition of class labels into standard term-document matrix improve the classification accuracy?, 4.) Is …

Identifying Key Topics Bearing Negative Sentiment On Twitter: Insights Concerning The 2015-2016 Zika Epidemic, Ravali Mamidi, Michele Miller, Tanvi Banerjee, William Romine, Amit Sheth

Publications

Background To understand the public sentiment regarding the Zika virus, social media can be leveraged to understand how positive, negative, and neutral sentiments are expressed in society. Specifically, understanding the characteristics of negative sentiment could help inform federal disease control agencies’ efforts to disseminate relevant information to the public about Zika-related issues.

Objective The purpose of this study was to analyze the public sentiment concerning Zika using posts on Twitter and determine the qualitative characteristics of positive, negative, and neutral sentiments expressed.

Methods Machine learning techniques and algorithms were used to analyze the sentiment of tweets concerning Zika. A supervised …

An Automated Negotiation System For Ecommerce Store Owners To Enable Flexible Product Pricing, Jake O'Halloran

Dissertations

If a store owner wishes to sell a product online, they traditionally have two options for deciding on a price. They can sell the product at a fixesd price like the products sold on sites like Amazon, or they can put the product in an auction and let demand from customers drive the final sales price like the products sold on sites like eBay. Both options have their pros and cons. An alternative option for deciding on a final sales price for the product is to enable negotiation on the product. With this, there is a dynamic nature to the …

Augmenting American Fuzzy Lop To Increase The Speed Of Bug Detection, Raviraj Mahajan

Dissertations

Whitebox fuzz testing is a vital part of the software testing process in the software development life cycle (SDLC). It is used for bug detection and security vulnerability checking as well. But current tools lack the ability to detect all the bugs and cover the entire code under test in a reasonable time. This study will explore some of the various whitebox fuzzing techniques and tools (AFL, SAGE, Driller, etc.) currently in use followed by a discussion of their strategies and the challenges facing them. One of the most popular state-of-the-art fuzzers, American Fuzzy Lop (AFL) will be discussed in …

Investigation Into The Perceptually Informed Data For Environmental Sound Recognition, Chenglin Kang

Dissertations

Environmental sound is rich source of information that can be used to infer contexts. With the rise in ubiquitous computing, the desire of environmental sound recognition is rapidly growing. Primarily, the research aims to recognize the environmental sound using the perceptually informed data. The initial study is concentrated on understanding the current state-of-the-art techniques in environmental sound recognition. Then those researches are evaluated by a critical review of the literature. This study extracts three sets of features: Mel Frequency Cepstral Coefficients, Mel-spectrogram and sound texture statistics. Two kinds machine learning algorithms are cooperated with appropriate sound features. The models are …

Comparing Defeasible Argumentation And Non-Monotonic Fuzzy Reasoning Methods For A Computational Trust Problem With Wikipedia, Ryan Kirwan

Dissertations

Computational trust is an ever-more present issue with the surge in autonomous agent development. Represented as a defeasible phenomenon, problems associated with computational trust may be solved by the appropriate reasoning methods. This paper compares two types of such methods, Defeasible Argumentation and Non-Monotonic Fuzzy Logic to assess which is more effective at solving a computational trust problem centred around Wikipedia editors. Through the application of these methods with real-data and a set of knowledge-bases, it was found that the Fuzzy Logic approach was statistically significantly better than the Argumentation approach in its inferential capacity.

Predicting Violent Crime Reports From Geospatial And Temporal Attributes Of Us 911 Emergency Call Data, Vincent Corcoran

Dissertations

The aim of this study is to create a model to predict which 911 calls will result in crime reports of a violent nature. Such a prediction model could be used by the police to prioritise calls which are most likely to lead to violent crime reports. The model will use geospatial and temporal attributes of the call to predict whether a crime report will be generated. To create this model, a dataset of characteristics relating to the neighbourhood where the 911 call originated will be created and combined with characteristics related to the time of the 911 call. Geospatial …

Enhancing Partially Labelled Data: Self Learning And Word Vectors In Natural Language Processing, Eamon Mcentee

Dissertations

There has been an explosion in unstructured text data in recent years with services like Twitter, Facebook and WhatsApp helping drive this growth. Many of these companies are facing pressure to monitor the content on their platforms and as such Natural Language Processing (NLP) techniques are more important than ever. There are many applications of NLP ranging from spam filtering, sentiment analysis of social media, automatic text summarisation and document classification.

Performance Comparison Of Hybrid Cnn-Svm And Cnn-Xgboost Models In Concrete Crack Detection, Sahana Thiyagarajan

Dissertations

Detection of cracks mainly has been a sort of essential step in visual inspection involved in construction engineering as it is the commonly used building material and cracks in them is an early sign of de-basement. It is hard to find cracks by a visual check for the massive structures. So, the development of crack detecting systems generally has been a critical issue. The utilization of contextual image processing in crack detection is constrained, as image data usually taken under real-world situations vary widely and also includes the complex modelling of cracks and the extraction of handcrafted features. Therefore the …

Effects Of Correlation Of Channel Gains On The Secrecy Capacity In The Gaussian Wiretap Channel, Abhishek Lokur

Department of Electrical and Computer Engineering: Dissertations, Theses, and Student Research

Secrecy capacity is one of the most important characteristic of a wireless communication channel. Therefore, the study of this characteristic wherein the system has correlated channel gains and study them for different line-of-sight (LOS) propagation scenarios is of ultimate importance.

The primary objective of this thesis from the mathematical side is to determine the secrecy capacity (SC) for correlated channel gains for the main and eavesdropper channels in a Gaussian Wiretap channel as a function from main parameters (μ, Σ, ρ). f(h₁, h₂) is the joint distribution of the two channel gains at channel use (h …

Exploring Critical Success Factors For Data Integration And Decision-Making In Law Enforcement, Marquay Edmondson, Walter R. Mccollum, Mary-Margaret Chantre, Gregory Campbell

International Journal of Applied Management and Technology

Agencies from various disciplines supporting law enforcement functions and processes have integrated, shared, and communicated data through ad hoc methods to address crime, terrorism, and many other threats in the United States. Data integration in law enforcement plays a critical role in the technical, business, and intelligence processes created by users to combine data from various sources and domains to transform them into valuable information. The purpose of this qualitative phenomenological study was to explore the current conditions of data integration frameworks through user and system interactions among law enforcement organizational processes. Further exploration of critical success factors used to …

Analyzing The Adoption Rate Of Local Variable Type Inference In Open-Source Java 10 Projects, Clayton Liddell, Donghoon Kim

Journal of the Arkansas Academy of Science

Type Inference is used in programming languages to improve writability. In this paper, we will be looking more specifically at Local Variable Type Inference (LVTI). For those unfamiliar with LVTI, we will also give an in-depth explanation of what it is and how it works. There is a lot of debate surrounding Type Inference in modern day programming languages. More specifically, whether the costs associated with LVTI outweigh the benefits. It has found its way into many higher-level languages including C#, C++, JavaScript, Swift, Kotlin, Rust, Go, etc. In this paper, we will look at the usefulness of LVTI and …

Uncertainty Theory Based Reliability-Centric Cyber-Physical System Design, Houbing Song, Ya Jiang, Mingzhe Wang, Xun Jiao, Hui Kong, Rui Wang, Yongxin Liu, Jian Wang, Jiaguang Sun

Publications

Cyber-physical systems (CPSs) are built from, and depend upon, the seamless integration of software and hardware components. The most important challenge in CPS design and verification is to design CPS to be reliable in a variety of uncertainties, i.e., unanticipated and rapidly evolving environments and disturbances. The costs, delays and reliability of the designed CPS are highly dependent on software-hardware partitioning in the design. The key challenges in partitioning CPSs is that it is difficult to formalize reliability characterization in the same way as the uncertain cost and time delay.

In this paper, we propose a new CPS design paradigm …

Recurrent Residual U-Net For Medical Image Segmentation, Md Zahangir Alom, Christopher Yakopcic, Mahmudul Hasan, Tarek M. Taha, Vijayan K. Asari

Electrical and Computer Engineering Faculty Publications

Deep learning (DL)-based semantic segmentation methods have been providing state-of-the-art performance in the past few years. More specifically, these techniques have been successfully applied in medical image classification, segmentation, and detection tasks. One DL technique, U-Net, has become one of the most popular for these applications. We propose a recurrent U-Net model and a recurrent residual U-Net model, which are named RU-Net and R2U-Net, respectively. The proposed models utilize the power of U-Net, residual networks, and recurrent convolutional neural networks. There are several advantages to using these proposed architectures for segmentation tasks. First, a residual unit helps when training deep …

A Survey Of Techniques For Mobile Service Encrypted Traffic Classification Using Deep Learning, Pan Wang, Xuejiao Chen, Feng Ye, Zhixin Sun

Electrical and Computer Engineering Faculty Publications

The rapid adoption of mobile devices has dramatically changed the access to various net- working services and led to the explosion of mobile service traffic. Mobile service traffic classification has been a crucial task that attracts strong interest in mobile network management and security as well as machine learning communities for past decades. However, with more and more adoptions of encryption over mobile services, it brings a lot of challenges about mobile traffic classification. Although classical machine learning approaches can solve many issues that port and payload-based methods cannot solve, it still has some limitations, such as time-consuming, costly handcrafted …

Light Touch Based Virtual Cane For Balance Assistance During Standing, Sindhu Reddy Alluri

Masters Theses

"Can additional information about one's body kinematics provided through hands improve human balance? Light-Touch (LT) through hands helps improve balance in a wide range of populations, both healthy and impaired. The force is too small to provide any meaningful mechanical assistance -- rather, it is suggested that the additional sensory information through hands helps the body improve balance.

To investigate the potential for improving human balance through biofeedback through hands, we developed a Virtual Cane (VC) for balance assistance during standing. The VC mimics the physical cane's function of providing information about one's body in space. Balance experiments on 10 …

Less Is More: Beating The Market With Recurrent Reinforcement Learning, Louis Kurt Bernhard Steinmeister

Masters Theses

"Multiple recurrent reinforcement learners were implemented to make trading decisions based on real and freely available macro-economic data. The learning algorithm and different reinforcement functions (the Differential Sharpe Ratio, Differential Downside Deviation Ratio and Returns) were revised and the performances were compared while transaction costs were taken into account. (This is important for practical implementations even though many publications ignore this consideration.) It was assumed that the traders make long-short decisions in the S&P500 with complementary 3-month treasury bill investments. Leveraged positions in the S&P500 were disallowed. Notably, the Differential Sharpe Ratio and the Differential Downside Deviation Ratio are risk …

Controlled Switching In Kalman Filtering And Iterative Learning Controls, He Li

Masters Theses

“Switching is not an uncommon phenomenon in practical systems and processes, for examples, power switches opening and closing, transmissions lifting from low gear to high gear, and air planes crossing different layers in air. Switching can be a disaster to a system since frequent switching between two asymptotically stable subsystems may result in unstable dynamics. On the contrary, switching can be a benefit to a system since controlled switching is sometimes imposed by the designers to achieve desired performance. This encourages the study of system dynamics and performance when undesired switching occurs or controlled switching is imposed. In this research, …

Persistence Pays Off: Paying Attention To What The Lstm Gating Mechanism Persists, John D. Kelleher, Giancarlo Salton

Articles

Language Models (LMs) are important components in several Natural Language Processing systems. Recurrent Neural Network LMs composed of LSTM units, especially those augmented with an external memory, have achieved state-of-the-art results. However, these models still struggle to process long sequences which are more likely to contain long-distance dependencies because of information fading and a bias towards more recent information. In this paper we demonstrate an effective mechanism for retrieving information in a memory augmented LSTM LM based on attending to information in memory in proportion to the number of timesteps the LSTM gating mechanism persisted the information.

Languages For Different Health Information Readers: Multitrait-Multimethod Content Analysis Of Cochrane Systematic Reviews Textual Summary Formats, Jasna Karačić, Pierpaolo Dondio, Ivan Buljan, Darko Hren, Ana Marušić

Articles

Background: Although subjective expressions and linguistic fluency have been shown as important factors in processing and interpreting textual facts, analyses of these traits in textual health information for different audiences are lacking. We analyzed the readability and linguistic psychological and emotional characteristics of different textual summary formats of Cochrane systematic reviews. Methods: We performed a multitrait-multimethod cross-sectional study of Press releases available at Cochrane web site (n= 162) and corresponding Scientific abstracts (n= 158), Cochrane Clinical Answers (n= 35) and Plain language summaries in English (n= 156), French (n= 101), German (n= 41) and Croatian (n=156). We used SMOG index …

The "Invisible Hand" Of Peer Review: The Implications Of Author-Referee Networks On Peer Review In A Scholarly Journal, Pierpaolo Dondio, Niccolo Casnici, Nigel Gilbert, Francisco Grimaldo, Flaminio Squazzoni

Articles

Peer review is not only a quality screening mechanism for scholarly journals. It also connects authors and referees either directly or indirectly. This means that their positions in the network structure of the community could influence the process, while peer review could in turn influence subsequent networking and collaboration. This paper aims to map these complex network implications by looking at 2232 author/referee couples in an interdisciplinary journal that uses double blind peer review. By reconstructing temporal co-authorship networks, we found that referees tended to recommend more positively submissions by authors who were within three steps in their collaboration network. …

Large-Scale Green Supplier Selection Approach Under A Q-Rung Interval-Valued Orthopair Fuzzy Environment, Limei Liu, Wenzhi Cao, Biao Shi, Ming Tang

Articles

As enterprises pay more and more attention to environmental issues, the green supply chain management (GSCM) mode has been extensively utilized to guarantee profit and sustainable development. Greensupplierselection(GSS),whichisakeysegmentofGSCM,hasbeeninvestigated to put forward plenty of GSS approaches.