Bioresource and Agricultural Engineering Commons^™

Spatiotemporal Metabolic Network Models Reveal Complex Autotroph-Heterotroph Biofilm Interactions Governed By Photon Incidences, Poonam Phalak, Hans C. Bernstein, Stephen R. Lindemann, Ryan S. Renslow, Dennis G. Thomas, Michael A. Henson, Hyun-Seob Song

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Autotroph-heterotroph interactions are ubiquitous in natural environment and play a key role in controlling various essential ecosystem functions, such as production and utilization of organic matter, cycling of nitrogen, sulfur, and other chemical elements. Understanding how these biofilm metabolic interactions are constrained in space and time remains challenging because fully predictive models designed for this purpose are currently limited. Toward filling this gap, here we developed community metabolic network models for two autotroph-heterotroph biofilm consortia (termed UCC-A and UCC-O), which share a suite of common heterotrophic members but have a single distinct photoautotrophic cyanobacterium (Phormidesmis priestleyi str. ANA and …

Ai-Enabled Droplet Detection And Tracking For Agricultural Spraying Systems, Praneel Acharya, Travis A. Burgers, Doang Nguyen

Mechanical Engineering Faculty Publications

his work leverages recent advancements in com- puter vision and deep learning to detect and track the motion of droplets captured by a camera. While classical computer vision techniques have been employed for detection and tracking, those approaches have limitations and are not trivially extended to droplets. We approach the problems of droplet detection and tracking through a data-driven framework, in which an annotated database of droplet images is built and object detection and tracking models are trained on this database. The accuracy of the model is evaluated and the whole process is discussed. At this point, droplet geometric properties …

Dynamics Of Crop Evapotranspiration Of Four Major Crops On A Large Commercial Farm: Case Of The Navajo Agricultural Products Industry, New Mexico, Usa, Koffi Djaman, Komlan Koudahe, Ali T. Mohammed

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Crop evapotranspiration (ETa) is the main source of water loss in farms and watersheds, and with its effects felt at a regional scale, it calls for irrigation professionals and water resource managers to accurately assess water requirements to meet crop water use. On a multi-crop commercial farm, different factors affect cropland allocation, among which crop evapotranspiration is one of the most important factors regarding the seasonally or annually available water resources for irrigation in combination with the in-season effective precipitation. The objective of the present study was to estimate crop evapotranspiration for four major crops grown on the Navajo Agricultural …

Strategic Planning For Exchanging Treated Urban Wastewater For Agricultural Water With The Approach Of Supplying Sustainable Urban Water: A Case Study Of Mashhad, Iran, Sasan Esfandiari, Arash Dourandish, Ali Firoozzare, Saleh Taghvaeian

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Considering the increasing demand for urban water and the low water-use efficiency in the agricultural sector, an exchange of treated urban wastewater for agricultural water could be a fundamental solution for administering sustainable management of water resources. However, implementing the intersectoral water exchange project is influenced by the economic, social, and environmental conditions of each region, especially in developing countries. Therefore, this study sought to identify the best possible strategies for exchanging treated urban wastewater for agricultural water in Mashhad city, located in Iran, a country that suffers from decreased urban water resources. Based on the interviews conducted with the …

Biochar Preparation, Investigation Of Properties And Application As A Low-Cost Adsorbent – A Review, A Kh Aripov, S M. Turabdzhanov, Sh Komilova, O Sh Qodirov, G S. Rakhimova, T V. Darabkova, Zh Aimenova, L S. Rakhimova

Technical science and innovation

An overview of current developments in biochar application in water and wastewater treatment is given in this article, along with a brief explanation of the sorption mechanisms for removing contaminants and the techniques for biochar preparation. In order to encourage the continued use of biochar in effective water and wastewater treatment, future research directions and environmental concerns about biochar are also presented.

A Novel Activated Biochar-Based Immunosensor For Rapid Detection Of E. Coli O157:H7, Abdus Sobhan, Fei Jia, Lisa Cooney Kelso, Sonatan Kumar Biswas, Kasiviswanathan Muthukumarappan, Changyong Cao, Lin Wei, Yanbin Li

Biological and Agricultural Engineering Faculty Publications and Presentations

E. coli O157:H7, one of the major foodborne pathogens, can cause a significant threat to the safety of foods. The aim of this research is to develop an activated biochar-based immunosensor that can rapidly detect E. coli O157:H7 cells without incubation in pure culture. Biochar was developed from corn stalks using proprietary reactors and then activated using steam-activation treatment. The developed activated biochar presented an enhanced surface area of 830.78 m2/g. To develop the biosensor, the gold electrode of the sensor was first coated with activated biochar and then functionalized with streptavidin as a linker and further immobilized with biotin-labeled …

Creating Sustainable Biofuels Using Essential Oil Distillery Leaf Waste Near Vohimana Reserve, Ashley Cohen

Independent Study Project (ISP) Collection

Like most of Madagasacar’s population, people around Vohimana Reserve rely on traditional fuels like firewood and charcoal for cooking and heating. As a result, the region is facing deforestation, which poses a threat to biodiversity and the livelihoods of local populations. A local essential oil distillery was created by the NGO L’Homme et L’Environnement as a sustainable income generator to combat deforestation and protect biodiversity. The distillery produces leaf biomass that can be mixed with binding agent(s) and transformed into biofuel as a sustainable alternative to traditional fuels. 14 biofuels were created by combining distillery leaf biomass and various percent …

Interaction Networks Are Driven By Community-Responsive Phenotypes In A Chitin-Degrading Consortium Of Soil Microbes, Ryan Mcclure, Yuuliya Farris, Robert Danczak, William Nelson, Hyun-Seob Song, Aimee Kessell, Joon-Yong Lee, Sneha Couvillion, Christopher Henry, Janet K. Jansson, Kristen S. Hofmockel

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Soil microorganisms provide key ecological functions that often rely on metabolic interactions between individual populations of the soil microbiome. To better understand these interactions and community processes, we used chitin, a major carbon and nitrogen source in soil, as a test substrate to investigate microbial interactions during its decomposition. Chitin was applied to a model soil consortium that we developed, “model soil consortium-2” (MSC-2), consisting of eight members of diverse phyla and including both chitin degraders and nondegraders. A multiomics approach revealed how MSC-2 community-level processes during chitin decomposition differ from monocultures of the constituent species. Emergent properties of both …

Interaction Networks Are Driven By Community-Responsive Phenotypes In A Chitin-Degrading Consortium Of Soil Microbes, Ryan Mcclure, Yuliya Farris, Robert Danczak, William Nelson, Hyun-Seob Song, Aimee Kessell, Sneha Couvillion, Christopher Henry, Janet K. Jansson, Kristen S. Hofmockel

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Soil microorganisms provide key ecological functions that often rely on metabolic interactions between individual populations of the soil microbiome. To better understand these interactions and community processes, we used chitin, a major carbon and nitrogen source in soil, as a test substrate to investigate microbial interactions during its decomposition. Chitin was applied to a model soil consortium that we developed, “model soil consortium-2” (MSC-2), consisting of eight members of diverse phyla and including both chitin degraders and nondegraders. A multiomics approach revealed how MSC-2 community-level processes during chitin decomposition differ from monocultures of the constituent species. Emergent properties of both …

Electrochemical Biosensing And Deep Learning-Based Approaches In The Diagnosis Of Covid-19: A Review, Omer Sadak, Ferhat Sadak, Ozal Yildirim, Nicole M. Iverson, Rizwan Qureshi, Muhammed Talo, Chui Ping Ooi, U. Rajendra Acharya, Sundaram Gunasekaran, Tanvir Alam

Department of Agricultural and Biological Systems Engineering: Faculty Publications

COVID-19 caused by the transmission of SARS-CoV-2 virus taking a huge toll on global health and caused life-threatening medical complications and elevated mortality rates, especially among older adults and people with existing morbidity. Current evidence suggests that the virus spreads primarily through respiratory droplets emitted by infected persons when breathing, coughing, sneezing, or speaking. These droplets can reach another person through their mouth, nose, or eyes, resulting in infection. The "gold standard'' for clinical diagnosis of SARS-CoV-2 is the laboratory-based nucleic acid amplification test, which includes the reverse transcription-polymerase chain reaction (RT-PCR) test on nasopharyngeal swab samples. The main concerns …

Crop Response To Thermal Stress Without Yield Loss In Irrigated Maize And Soybean In Nebraska, Sandeep Bhatti, Derek M. Heeren, Steven R. Evett, Susan A. O'Shaughnessy, Daran Rudnick, Trenton E. Franz, Yufeng Ge, Christopher M.U. Neale

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Thermal sensing provides rapid and accurate estimation of crop water stress through canopy temperature data. Canopy temperature is highly dependent on the transpiration rate of the leaves. It is usually assumed that any reduction in crop evapotranspiration (ET) leads to crop yield loss. As a result, an increase in canopy temperature due to a decrease in crop ET would indicate crop yield loss. This research evaluated the hypothesis that crop water stress could be detected using canopy temperature measurements (increased leaf temperature) from infrared thermometers (IRTs) before incurring crop yield loss. This would be possible in a narrow range when …

Real-Time Irrigation Scheduling Of Maize Using Degrees Above Non-Stressed (Dans) Index In Semi-Arid Environment, Hope Njuki Nakabuye, Daran Rudnick, Kendall C. Dejonge, Tsz Him Lo, Derek M. Heeren, Xin Qiao, Trenton E. Franz, Abia Katimbo, Jiaming Duan

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Irrigation scheduling methods have been used to determine the timing and amount of water applied to crops. Scheduling techniques can include measurement of soil water content, quantification of crop water use, and monitoring of crop physiological response to water stress. The aim of this study was to evaluate the performance of a simplified crop canopy temperature measurement (CTM) method as Irrigation Principles. Soil and Water Conservation Engineera technique to schedule irrigation for maize. Specifically, the Degrees Above Non-Stressed (DANS) index, which suggests water stress when canopy temperature exceeds the non-stressed canopy temperature (T_cns), was determined by estimating T …

Modeling Actual Evapotranspiration With Msi-Sentinel Images And Machine Learning Algorithms, Robson Argolo Dos Santos, Everardo Chartuni Mantovani, Elpídio Inácio Fernandes-Filho, Roberto Filgueiras, Rodrigo Dal Sasso Lourenço, Vinícius Bof Bufon, Christopher M. U. Neale

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The modernization of computational resources and application of artificial intelligence algorithms have led to advancements in studies regarding the evapotranspiration of crops by remote sensing. Therefore, this research proposed the application of machine learning algorithms to estimate the ET_rF (Evapotranspiration Fraction) of sugar can crop using the METRIC (Mapping Evapotranspiration at High Resolution with Internalized Calibration) model with data from the Sentinel-2 satellites constellation. In order to achieve this goal, images from the MSI sensor (MultiSpectral Instrument) from the Sentinel-2 and the OLI (Operational Land Imager) and TIRS (Thermal Infrared Sensor) sensors from the Landsat-8 were acquired nearly …

Science And Food Fictions: Agricultural Technologies, The Evolution Of The Modern Industrial Diet, And Calls For A Food Revolution, Tracey Daniels-Lerberg

Green Humanities: A Journal of Ecological Thought in Literature, Philosophy & the Arts

[First paragraph] Individual food choices are culturally and historically contingent practices that arise through an amalgamation of often hidden political, scientific, and economic policies that shape desire and influence access. Food, like all other man-made mechanisms of control and authority, has been used “as a political tool for […] subjugating (either economically or politically) other nations” according to William A. Dando, a professor at the University of North Dakota, who in 1975 urged American agricultural officials not to use food as “a weapon” against starving nations, something he feared was eminently possible given the economic and political climate of agricultural …

Ag-Iot For Crop And Environment Monitoring: Past, Present, And Future, Nipuna Chamara, Md Didarul Islam, Geng Bai, Yeyin Shi, Yufeng Ge

Department of Agricultural and Biological Systems Engineering: Faculty Publications

CONTEXT: Automated monitoring of the soil-plant-atmospheric continuum at a high spatiotemporal resolution is a key to transform the labor-intensive, experience-based decision making to an automatic, data-driven approach in agricultural production. Growers could make better management decisions by leveraging the real-time field data while researchers could utilize these data to answer key scientific questions. Traditionally, data collection in agricultural fields, which largely relies on human labor, can only generate limited numbers of data points with low resolution and accuracy. During the last two decades, crop monitoring has drastically evolved with the advancement of modern sensing technologies. Most importantly, the introduction …

Antioxidant Deterioration In Active Composite Film During Storage, Anang Lastriyanto, Kurniawan Yuniarto, Cahyo Mustiko Okta Muvianto, Hary -. Kurniawan

Journal of Applied Packaging Research

Pure polylactic acid is widely used for packaging, but it has limitation due to its oxygen barrier property. We investigated oxygen scavenging active packaging by incorporating synthetic antioxidant butylated hydroxyl toluene (BHT) into matrix composite film (plasticized polylactic acid-natrium montmorillonite/NaMMT) using direct casting. The 2.2-Diphenyl-1-picrylhydrazyl (DPPH) or antiradical activity was used to investigate oxygen scavenging of butylated hydroxytoluene in PLA active composite film during 15 storage days at 30oC. Oxygen permeability was calculated by using ASTM F3136-15 method. BHT oxidation rate of the active film composite film was 0.043 times per day. The BHT was estimated fully deteriorate after 108 …

Climate And Genetic Data Enhancement Using Deep Learning Analytics To Improve Maize Yield Predictability, Parisa Sarzaeim, Francisco Muñoz-Arriola, Diego Jarquin

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Despite efforts to collect genomics and phenomics (“omics”) and environmental data, spatiotemporal availability and access to digital resources still limit our ability to predict plants’ response to changes in climate. Our goal is to quantify the improvement in the predictability of maize yields by enhancing climate data. Large-scale experiments such as the Genomes to Fields (G2F) are an opportunity to provide access to “omics” and climate data. Here, the objectives are to: (i) improve the G2F “omics” and environmental database by reducing the gaps of climate data using deep neural networks; (ii) estimate the contribution of climate and genetic database …

Neonicotinoid Pesticide And Nitrate Mixture Removal And Persistence In Floating Treatment Wetlands, Julia K. Lindgren, Tiffany L. Messer, Daniel N. Miller, Daniel D. Snow, Thomas G. Franti

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Mesocosm and microcosm experiments were conducted to explore the applicability of floating treatment wetlands (FTWs), an ecologically based management technology, to remove neonicotinoid insecticides and nitrate from surface water. The mesocosm experiment evaluated three treatments in triplicate over a 21-d period. Floating treatment wetland mesocosms completely removed nitrate-N over the course of the experiment even when neonicotinoid insecticides were present. At the completion of the experiment, 79.6% of imidacloprid and degradation byproducts and 68.3% of thiamethoxam and degradation byproducts were accounted for in the water column. Approximately 3% of imidacloprid and degradation byproducts and 5.0% of thiamethoxam and degradation byproducts …

Permafrost Landscape History Shapes Fluvial Chemistry, Ecosystem Carbon Balance, And Potential Trajectories Of Future Change, Scott Zolkos, Suzanne E. Tank, Steven V. Kokelj, Robert G. Striegl, Sarah Shakil, Carolina Voigt, Oliver Sonnentag, William L. Quinton, Edward A. G. Schuur, Donatella Zona, Peter M. Lafleur, Ryan C. Sullivan, Masahito Ueyama, David P. Billesbach, David Cook, Elyn R. Humphreys, Philip Marsh

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Intensifying permafrost thaw alters carbon cycling by mobilizing large amounts of terrestrial substrate into aquatic ecosystems. Yet, few studies have measured aquatic carbon fluxes and constrained drivers of ecosystem carbon balance across heterogeneous Arctic landscapes. Here, we characterized hydrochemical and landscape controls on fluvial carbon cycling, quantified fluvial carbon fluxes, and estimated fluvial contributions to ecosystem carbon balance across 33 watersheds in four ecoregions in the continuous permafrost zone of the western Canadian Arctic: unglaciated uplands, ice-rich moraine, and organic-rich lowlands and till plains. Major ions, stable isotopes, and carbon speciation and fluxes revealed patterns in carbon cycling across ecoregions …

The Effect Of Water Management And Ratoon Rice Cropping On Methane Emissions And Harvest Yield In Arkansas, Marguerita Leavitt

Graduate Theses and Dissertations

Sustainable intensification of rice farming is crucial to meeting human food needs while reducing environmental impacts. Rice produces 8% of all anthropogenic CH4, which is a potent greenhouse gas. CH4 emissions can potentially be reduced by cultivation practices that minimize the number of days the fields are saturated, such as dry-seeding instead of water-seeding and irrigation using the alternate wetting and drying (AWD) technique instead of delayed, continuous flooding (DF). Ratoon cropping, wherein a second crop of rice is grown from the harvested stubble of the first crop, can be used to produce additional yield with minimal labor, but may …

Production Of Polyhydroxybutyrate From Corn Fiber Using Paraburkholderia Sacchari, Twissa Mitra

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Poly(3-hydroxybutyrate) (PHB) is one of the most broadly studied members of the polyhydroxyalkanoates (PHA) family. It is a fully biodegradable thermoplastic produced by microbial fermentation having properties similar to polypropylene. PHB has a market price that is three times higher than the cost of synthetic plastics. Substrate cost makes up 50 to 60 % of that cost; hence, researchers have been exploring various cheap natural resources with high carbohydrate content to be used as a substrate for PHB production.

In this study, corn fiber, a lignocellulosic biomass has been studied as an option for a substrate to produce PHB. This …

Pesticide Application Management Toolset For Worker Protection Standards, Nathan W. Thorson

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

The application of Pesticides has become a widely adopted practice within modern agriculture, however this practice poses a significant health risk to farm workers and crop advisors when pesticide exposures occur. Current safety standards require documentation of each application to help mitigate human exposure, yet these standards rely heavily on antiquated data collection formats and complex communication systems putting little emphasis on notification timeliness. Our objective was to reduce the risk of pesticide exposure for all farm workers and crop advisors by utilizing technological automation processes to reduce the number of links within the communication system. This proved successful though …

Cybersecurity Of Agricultural Machinery: Exploring Cybersecurity Risks And Solutions For Secure Agricultural Machines, Mark Freyhof

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Modern agriculture is reliant on agricultural machinery for the production of food, fuel, and other agricultural products. The need for producing large quantities of quality agricultural products while sustainably stewarding environmental resources has led to the integration of numerous digital technologies into modern agricultural machinery, such as the CAN bus and telematic control units (Liu et al., 2021). An unintended drawback of these integrated digital technologies is the opportunity for these components to become cyberattack vectors. Cyberattack instances have increasingly targeted critical infrastructures, with numerous reports from agencies such as the Federal Bureau of Investigation (FBI) and Department of Homeland …

Land Use/ Land Cover Change Patterns And Trends In Two Dryland Regions, Omar Sulaiman Belhaj

Open Access Theses & Dissertations

Development and climate change affect the environment in numerous ways and to varyingdegrees. This effect appears prominent and more influential in arid regions. Therefore, land use/ land cover in these regions experience profound changes such as plant cover decrease and extinction of some plant species. Also, land use/ land cover in these regions has critical impacts on the environment and its components, such as shrublands shrinking and losing the habitat of animal species. The degree of changes and effects reaches severe levels that become urgent to figure out the impacts and find solutions to stop or mitigate the negative consequences. …

The Physical Properties And Handling Characteristics Of Pelletized Biomass Materials, Ryan Dean

All Theses

Biomass and feed pellets can be handled and stored using similar equipment used for other bulk materials; however, their unique physical characteristics can lead to handling challenges. Understanding the flow characteristics of these materials is essential for handling and storage system design, but these characteristics are not well defined in less-than-ideal conditions. The overall objective of this study was to evaluate how moisture content and level of fines influence the angle of repose (AoR) of hardwood, pine bedding, and feed pellets along with determining the impacts of displacement on the shear stress of fuel pellets utilizing a modified linear wall …

Bioleaching Of Arsenic From Agricultural Soils, Zachary Gilstrap

All Theses

Arsenic is a ubiquitous trace metalloid. However, increasing concentrations of arsenic in soil and water is a problem the world faces due to inputs from anthropogenic sources such as mining, milling, agriculture, and coal ash. One method of remediation for these arsenic-contaminated sites is bioleaching. While it is most often used to extract metals from raw ore, it is a viable and environmentally friendly method to remove the same metals from soil. Bioleaching removes metals by cultivating living organisms such as the fungi Aspergillus niger (A.niger) or the bacterium Thiobacillus ferrooxidans (T.ferrooxidans). This research aimed to investigate A. …

Studies On Air Injection In A Wastewater-Fed Subsurface Drip Irrigation System, Henry A. Gonzalez Hernandez

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

In 2020, the Ogallala High Plains Aquifer supplied irrigation water for approximately 3.6 million hectares in Nebraska, making it the most irrigated state in the United States. Although Nebraska is highly dependent in groundwater, locations included in the Gering-Fort Laramie Irrigation District (border of Nebraska and Wyoming) rely on surface water resources. In addition to these conventional water sources, using non-conventional alternatives for crop production can be just as important during water shortage times such as the one that e occurred in 2019 with the collapse of the Goshen/Gering-Fort Laramie Canal. Feedlot runoff presents a great opportunity in Nebraska, but …

Development Of A Decellularized Hydrogel Composite And Its Application In A Novel Model Of Disc-Associated Low Back Pain In Female Sprague Dawley Rats, David Lillyman

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Chronic low back pain is a global socioeconomic crisis compounded by an absence of reliable, curative treatments. The predominant pathology associated with chronic low back pain is degeneration of intervertebral discs in the lumbar spine. During degeneration, nerves can sprout into the intervertebral disc tissue and be chronically subjected to inflammatory and mechanical stimuli, resulting in pain. Pain arising from the intervertebral disc, or disc-associated pain, is a complex, multi-faceted disorder which necessitates valid animal models to screen therapeutics and study pathomechanisms of pain.

While many research teams have created animal models of disc degeneration, the translation of these platforms …

Development An Edge-Computing Sensing Unit For Continuous Measurement Of Canopy Cover Percentage Of Dry Edible Beans, Wei-Zhen Liang, Joseph Oboamah, Xin Qiao, Yufeng Ge, Robert M. Harveson, Daran R. Rudnick, Jun Wang, Haishun Yang, Angie Gradiz

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Canopy cover (CC) is an important indicator for crop development. Currently, CC can be estimated indirectly by measuring leaf area index (LAI), using commercially available hand-held meters. However, it does not capture the dynamics of CC. Continuous CC monitoring is essential for dry edible beans production since it can affect crop water use, weed, and disease control. It also helps growers to closely monitor “yellowness”, or senescence of dry beans to decide proper irrigation cutoff to allow the crop to dry down for harvest. The goal of this study was to develop a device – CanopyCAM, containing software and hardware …

Effect Of Bromoform And Linseed Oil On Greenhouse Gas Emissions From Stored Beef Manure, Andrew Ortiz Balsero, Mara Zelt, Amy Millmier Schmidt, Miguel Fudolig, Daniel N. Miller

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Emissions of carbon dioxide, methane, and nitrous oxide – potent greenhouse gases - from stored beef feedlot manure are a significant concern relative to climate change. Research on methane reduction strategies for enteric emissions has identified the application of organic additives, such as bromoform and linseed oil, to ruminant diets as potential solutions for reducing enteric emissions and pathogenic bacteria in excreted manure. The objective of this study was to determine the effect of bromoform and linseed oil on greenhouse gas emissions from beef feedlot manure, and on E. coli concentration in beef cattle manure, during a 5-week storage period. …