Bioresource and Agricultural Engineering Commons^™

Deep-Learning-Enhanced Automated Coherent-Light Diffraction System For High-Speed, Highly Accurate Strain-Specific Foodborne Bacterial Recognition, Yang Tian, Ziyu Liu, Yinuo Huang, Ramesh Bahadur Bist, Yiting Xiao, Samantha Marrianne Howe, Tsung Cheng Tsai, Terry Howell, Jeyam Subbiah, Michael L. Looper, Dongyi Wang

Biological and Agricultural Engineering Faculty Publications and Presentations

Rapid, accurate differentiation of bacterial pathogens at both species and strain levels is critical for clinical diagnostics, food safety, and epidemiological surveillance. We report a fully automated laser-diffraction platform that achieves rapid, label-free identification of bacterial pathogens at both species and strain levels. The system integrates dual cameras, an automated X-Y stage, and deep-learning classifiers to deliver sub-second, nondestructive diagnostics without reagents or culture. Using diffraction patterns from eight strains, including Escherichia coli O157:H7, K12, ATCC 25922, F18, Salmonella enterica, Listeria monocytogenes, Listeria innocua, and Staphylococcus aureus, a custom YOLO11x model attained 100 % Top-1 accuracy under five-fold stratified cross-validation …

Evaluation Of Robotic Swabbing And Fluorescent Sensing To Monitor The Hygiene Of Food Contact Surfaces, Siavash Mahmoudi, Clark Griscom, Pouya Sohrabipour, Yang Tian, Chaitanya Palleria, Philip G. Crandall, Dongyi Wang

Biological and Agricultural Engineering Faculty Publications and Presentations

Effective environmental monitoring is critical for preventing microbial and allergenic cross-contamination. However, manual swabbing methods, commonly used to verify hygienic conditions, are prone to inconsistent results because of variability in pressure, coverage, and techniques. Two novel solutions will be explored to address these challenges: a robotic swabbing system with tactile sensing control, and a fluorescence/absorbance spectrometer for non-contact, protein-based residue detection. The robotic system was evaluated against trained and untrained humans, measuring water pickup, surface coverage, and pressure consistency. Concurrently, the fluorescence system analyzed model poultry protein soil to correlate spectral patterns with contamination levels. The robotic system demonstrated statistically …

Nutrient Dynamics In Restored And Unrestored Urban Streams In The Piedmont Ecoregion Of South Carolina, Emily J. Jordan, Debabrata Sahoo, Calvin B. Sawyer, Jeremy W. Pike, Dara M. Park, Sarah A. White, Brian E. Haggard

Biological and Agricultural Engineering Faculty Publications and Presentations

The United States invests billions of dollars annually to perform stream restoration projects, yet few studies have investigated the effects this ecosystem manipulation has on nutrient cycling and associated water quality. Water quality improvement remains a substantial motivation for mitigating catchment-scale disturbances, especially in urban streams. Various urban land use practices impact the transfer and transport of nutrients such as soluble reactive phosphorus, ammonium, and nitrate plus nitrite from land into the streams and rivers. The uptake length (Sw), or the distance a dissolved nutrient travels downstream within a stream reach, can be measured using short-term nutrient injections, where shorter …

Insights From Consumers' Exposure To Environmental Nutrition Information On A Dashboard For Improving Sustainable Healthy Food Choices, Prince Agyemang, Ebenezer M. Kwofie, Jamie L. Baum, Dongyi Wang

Biological and Agricultural Engineering Faculty Publications and Presentations

Over the last decade, there has been a growing demand for tools to support sustainable healthy lifestyles, including food choices. Through a survey, this study examined the influence of environmental nutrition information conveyed with aids such as nudges and traffic light labels through a Dashboard for Improving Sustainable Healthy (DISH v1.0) food choices on consumer purchase intentions. DISH is an application that enables end-users to envisage and compare the potential impacts of their choices before purchasing. In the early stage of the technological development of DISH, the environmental nutrition information of two fast-food menus, plant-based and animal-based burgers, was tested …

Economic Impact Of Energy Accounting Schemes For Commercial Systems On A Broiler Farm With Power Demand And Generation, Yi Liang, Michael Popp

Biological and Agricultural Engineering Faculty Publications and Presentations

The aim of this study was to assess the impact of the on-farm solar photovoltaic (PV) generation to offset grid electricity consumption on a commercial poultry farm in the US. Hourly electricity production by PV systems was estimated using the System Advisor Model (SAM) of the National Renewable Energy Lab (NREL) and compared with the estimated electric load demand of a broiler house. We analyzed the economic benefits of installing solar systems of three capacities under net energy metering and net energy billing pricing scenarios. Results suggested that a smaller PV installation of 35 kWp, while substantially short of meeting …

New Insights Into Fertilisation With Animal Manure For Annual Double-Cropping Systems In Nitrate-Vulnerable Zones Of Northeastern Spain, Dolores Quilez, Monica Guillen, Marta Valles, Arturo Dauden, Beatriz Moreno-Garcia

Biological and Agricultural Engineering Faculty Publications and Presentations

Maize double-cropping production systems in Mediterranean areas have a great nitrogen extraction capacity and high nitrogen (N) requirements. This study aims to assess whether in these farming systems, animal manure can be applied, using adequate management practices, at levels exceeding the maximum annual amount of livestock manure established in the European Nitrate Directive for vulnerable zones (170 kg N ha-1) without increasing the risk of water nitrate contamination. We compare the risk of nitrate leaching under two fertilisation strategies, one with synthetic fertilisers and the second with a maximised application of pig slurry, exceeding the limits of the EU Nitrate …

Compact Solar-Powered Plasma Water Generator: Enhanced Germination Of Aged Seed With The Corona Dielectric Barrier Discharger, Yiting Xiao, Yang Tian, Haizheng Xiong, Ainong Shi, Jun Zhu

Biological and Agricultural Engineering Faculty Publications and Presentations

Seed aging adversely affects agricultural productivity by reducing germination rates and seedling vigor, leading to significant costs for seed banks and companies due to the need for frequent seed renewals. This study demonstrated the use of plasma-activated water (PAW), generated by a solar-powered corona dielectric barrier discharger, to enhance germination rates of spinach seeds that had been stored at 4 °C for 23 years. Treating seeds with PAW at 17 kV for 15 min improved germination (by 135%) and seedling growth compared to untreated seeds. Through detailed analysis, beneficial PAW properties for seed development were identified, and a molecular mechanism …

Effective Nutrient Management Of Surface Waters In The United States Requires Expanded Water Quality Monitoring In Agriculturally Intensive Areas, Christopher Oates, Hactor Fajardo, Khara Grieger, Daniel Obenaur, Rebecca Muenich, Natalie G. Nelson

Biological and Agricultural Engineering Faculty Publications and Presentations

The U.S. Clean Water Act is believed to have driven widespread decreases in pollutants from point sources and developed areas, but has not substantially affected nutrient pollution from agriculture. Today, the highest nutrient concentrations in surface waters are often associated with agricultural production. In this Perspective, we explore whether challenges stemming from the Clean Water Act’s inability to mitigate agricultural nutrient pollution are also exacerbated by coarse nutrient monitoring. We evaluate the current state of nutrient monitoring in surface waters of the contiguous U.S. relative to agricultural nutrient inputs to assess how monitoring effort varies across agriculturally intensive areas. The …

Blackberry Growth Monitoring And Feature Quantification With Unmanned Aerial Vehicle (Uav) Remote Sensing, Akwasi Tagoe, Alexander Silva, Cengiz Koparan, Aurelie Poncet, Dongyi Wang, Donald Johnson, Margaret Worthington

Biological and Agricultural Engineering Faculty Publications and Presentations

Efficiently managing agricultural systems necessitates accurate data collection from crops to examine phenotypic characteristics and improve productivity. Traditional data collection processes for specialty horticultural crops are often subjective, labor-intensive, and may not provide accurate information for precise management decisions in phenotypic studies and crop production. Reliable and standardized techniques to record and evaluate crop features using agricultural technology are essential for improving agricultural systems. The objective of the research was to develop a methodology for accurate measurement of blackberry flowers and vegetation coverage using UAV remote sensing and image analysis. The UAV captured 20,812 images in the visible spectrum, and …

Water Quality Impacts Of Recycling Nutrients Using Organic Fertilizers In Circular Agricultural Scenarios, W. Lisenbee, A. Saha, P. Mohammadpour, R. Cibin, Jason Philip Kaye, C. Grady, Indrajeet Chaubey

Biological and Agricultural Engineering Faculty Publications and Presentations

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A Simple Sandwich Electrochemical Immunosensor For Rapid Detection Of The Alzheimer’S Disease Biomarker Tau Protein, Mingzhu Yang, Yihong Chen, Hongyu Sun, Dujuan Li, Yanbin Li

Biological and Agricultural Engineering Faculty Publications and Presentations

As a typical biomarker of Alzheimer’s disease, rapid and specific detection of tau protein can help improve the early diagnosis and prognosis of the disease. In this study, a simple sandwich electrochemical immunosensor was developed for rapid detection of tau protein. Primary monoclonal antibodies (mAb1) against the middle domain of tau protein (amino acids 189–195) were immobilized on the gold electrode surface through a self-assembled monolayer (SAM) of 3,3′-dithiobis (sulfosuccinimidyl propionate) (DTSSP). Then the tau protein was captured through the specific adsorption between the antigen and the antibody, resulting in a change in the impedance. Secondary monoclonal antibodies (mAb2) against …

Flexible Biosensors For Food Pathogen Detection, Sonatan Biswas, Md Shariful Islam, Fei Jia, Yunteng Cao, Yanbin Li, Changyong Cao

Biological and Agricultural Engineering Faculty Publications and Presentations

Food contamination poses a significant threat to public health, the economy, and human health worldwide, occurring at any stage of the food supply chain, from farm to fork. Efficient and effective real-time monitoring methods for the early identification and rapid detection of pathogen contamination are critical to preventing possible food safety issues. In the past decade, flexible electrochemical biosensors have rapidly expanded in the detection of foodborne pathogens, owing to their ability to function well at biological interfaces that may be soft, intrinsically curvy, irregular, or deformable. The most important features of flexible sensors are their flexibility, multifunctionality, low cost, …

Memo: Dataset And Methods For Robust Multimodal Retinal Image Registration With Large Or Small Vessel Density Differences, Chiao-Yi Wang, Faranguisse Kahki Sadrieh, Yi-Ting Shen, Shih-En Chen, Sarah Kim, Victoria Chen, Achyut Raghavendra, Dongyi Wang, Osamah Saeedi, Yang Tao

Biological and Agricultural Engineering Faculty Publications and Presentations

The measurement of retinal blood flow (RBF) in capillaries can provide a powerful biomarker for the early diagnosis and treatment of ocular diseases. However, no single modality can determine capillary flowrates with high precision. Combining erythrocyte-mediated angiography (EMA) with optical coherence tomography angiography (OCTA) has the potential to achieve this goal, as EMA can measure the absolute RBF of retinal microvasculature and OCTA can provide the structural images of capillaries. However, multimodal retinal image registration between these two modalities remains largely unexplored. To fill this gap, we establish MEMO, the first public multimodal EMA and OCTA retinal image dataset. …

Nutritional-Environmental Trade-Offs In Potato Storage And Processing For A Sustainable Healthy Diet, Aubin Payne, Ebenezer M. Kwofie, Prince Agyemang, Jamie Baum

Biological and Agricultural Engineering Faculty Publications and Presentations

Over the last decade, poor diets and limited access to nutritious foods have been critical drivers of micronutrient deficiency in human health. However, food fortification at an industrialized scale in developed countries has helped eliminate deficiency-related diseases. In developing countries, fortified foods and biofortified materials have been delivered to nutrient-deficient communities. While these strategies have produced significant and acclaimed results, reports from the Food and Agricultural Organization suggest that over a quarter of the world’s population suffers from micronutrient deficiency. This implies that there are still declines in micronutrients in food products at different nodes along the food value chain …

An Amplification-Free Crispr-Sers Biosensor For Specific, Sensitive And Rapid Detection Of Salmonella Typhimurium In Poultry, Fei Jia, Bingyan Li, Yawen He, Yafang Shen, Juhong Chen, Xingmin Li, Yanbin Li

Biological and Agricultural Engineering Faculty Publications and Presentations

CRISPR (Clustered regularly interspaced short palindromic repeats) has been a cutting-edge biotechnology in both gene editing and biosensing due to its desirable features, such as high base resolution and set-and-forget operation. However, as a nucleic acid detection method, an DNA/RNA amplification procedure is still inevitable in CRISPR biosensors. In this study, a highly-ordered nanopore array SERS substrate, coated with silver nanoparticles, was fabricated and utilized as a platform for the specific detection of Salmonella Typhimurium (S. Typhimurium) without the time-consuming DNA amplification step. The smart sensing strategy was established by introducing an ssDNA labeled with a Raman active molecule …

A Review Of Three-Dimensional Vision Techniques In Food And Agriculture Applications, Lirong Xiang, Dongyi Wang

Biological and Agricultural Engineering Faculty Publications and Presentations

In recent years, three-dimensional (3D) machine vision techniques have been widely employed in agriculture and food systems, leveraging advanced deep learning technologies. However, with the rapid development of three-dimensional (3D) imaging techniques, the lack of a systematic review has hindered our ability to identify the most suitable imaging systems for specific agricultural and food applications. In this review, a variety of 3D imaging techniques are introduced, with their working principles and applications in agriculture and food systems. These techniques include Structure lighting-based 3D imaging, Multiview 3D imaging system, Time of Flight (ToF)-based 3D imaging system, Lighting Detection and Ranging (LiDAR), …

Degredation Of Organic Pollutants In Flocculated Liquid Digestate Using Photocatalytic Titanate Nanofibers: Mechanism And Response Surface Optimization, Yiting Xiao, Yang Tian, Yuanhang Zhan, Jun Zhu

Biological and Agricultural Engineering Faculty Publications and Presentations

Titanate nanofibers (TNFs) were synthesized using a hydrothermal method and were employed for the first time in this study to photocatalytically degrade organic pollutants found in flocculated liquid digestate of poultry litter. The photocatalytic performance of TNFs, with a bandgap of 3.16 eV, was tested based on degradation of organic pollutants and removal of color. Five combinations of pollutant concentration and pH were examined (0.2 to 1.3 g·L⁻¹ at pH 4 to 10). Central composite design (CCD) and response surface methodology (RSM) were applied in order to optimize the removal rates of volatile fatty acids (VFA) and chemical oxygen …

Alkaline Pretreatment And Air Mixing For Improvement Of Methane Production From Anaerobic Co-Digestion Of Poultry Litter With Wheat Straw, Yuanhang Zhan, Jun Zhu, Yiting Xiao, Leland C. Schrader

Biological and Agricultural Engineering Faculty Publications and Presentations

Alkaline pretreatment (AL) and air mixing (air) both have the potential to improve anaerobic co-digestion (Co-AD) of poultry litter with wheat straw for methane production. In this study, the effects of the combination of AL (pH 12 for 12 h) and air mixing (12 mL·d⁻¹) on the Co-AD process were investigated. The substrate hydrolysis was enhanced by AL, with soluble chemical oxygen demand increased by 4.59 times and volatile fatty acids increased by 5.04 times. The cumulative methane yield in the group of Co-AD by AL integrated with air (Co-(AL + air)), being 287 mL·(g VS_added) …

A Novel Activated Biochar-Based Immunosensor For Rapid Detection Of E. Coli O157:H7, Abdus Sobhan, Fei Jia, Lisa Cooney Kelso, Sonatan Kumar Biswas, Kasiviswanathan Muthukumarappan, Changyong Cao, Lin Wei, Yanbin Li

Biological and Agricultural Engineering Faculty Publications and Presentations

E. coli O157:H7, one of the major foodborne pathogens, can cause a significant threat to the safety of foods. The aim of this research is to develop an activated biochar-based immunosensor that can rapidly detect E. coli O157:H7 cells without incubation in pure culture. Biochar was developed from corn stalks using proprietary reactors and then activated using steam-activation treatment. The developed activated biochar presented an enhanced surface area of 830.78 m2/g. To develop the biosensor, the gold electrode of the sensor was first coated with activated biochar and then functionalized with streptavidin as a linker and further immobilized with biotin-labeled …

Transitioning To Sustainable Healthy Diets: A Model-Based And Conceptual System Thinking Approach To Optimized Sustainable Diet Concepts In The United States, Prince Agyemang, Ebenezer M. Kwofie, Jamie Baum

Biological and Agricultural Engineering Faculty Publications and Presentations

Food production and consumption are essential in human existence, yet they are implicated in the high occurrences of preventable chronic diseases and environmental degradation. Although healthy food may not necessarily be sustainable and vice versa, there is an opportunity to make our food both healthy and sustainable. Attempts have been made to conceptualize how sustainable healthy food may be produced and consumed; however, available data suggest a rise in the prevalence of health-related and negative environmental consequences of our food supply. Thus, the transition from conceptual frameworks to implementing these concepts has not always been effective. This paper explores the …

The Use Of Electronic Nose In The Quality Evaluation And Adulteration Identification Of Beijing-You Chicken, Jingru Chen, Wenjie Yan, Yu Fu, Liang Wang, Xueze Lv, Ruitong Dai, Xingming Li, Fei Jia

Biological and Agricultural Engineering Faculty Publications and Presentations

The objective of this study was to reveal the secrets of the unique meat characteristics of Beijing-you chicken (BJY) and to compare the difference of quality and flavor with Luhua chicken (LH) and Arbor Acres broiler (AA) at their typical market ages. The results showed the meat of BJY was richer in essential amino acids, arachidonic acid contents, inosine monophosphate (IMP), and guanosine monophosphate (GMP). The total fatty acid and unsaturated fatty acid contents of BJY chicken and LH chicken were lower than that of AA broilers, whereas the ratios of unsaturated fatty acids/saturated fatty acids (2.31) and polyunsaturated fatty …

Review: Biological Engineering For Nature-Based Climate Solutions, Benjamin R. K. Runkle

Biological and Agricultural Engineering Faculty Publications and Presentations

Nature-based Climate Solutions are landscape stewardship techniques to reduce greenhouse gas emissions and increase soil or biomass carbon sequestration. These mitigation approaches to climate change present an opportunity to supplement energy sector decarbonization and provide co-benefits in terms of ecosystem services and landscape productivity. The biological engineering profession must be involved in the research and implementation of these solutions—developing new tools to aid in decision-making, methods to optimize across different objectives, and new messaging frameworks to assist in prioritizing among different options. Furthermore, the biological engineering curriculum should be redesigned to reflect the needs of carbon-based landscape management. While doing …

Water Quality Concentration Trends And Loads Identify Management Needs In The Lake Wister Watershed, Abbie L. Lasater, Brian Haggard

Biological and Agricultural Engineering Faculty Publications and Presentations

Trend analyses of water quality seek to determine whether concentrations of constituents have increased or decreased over time, which can show the effectiveness of management practices or the need for pollutant reduction. The Poteau River watershed (PRW) is a transboundary watershed across Arkansas and Oklahoma and, in Arkansas, has been listed as a priority watershed within the Arkansas Nonpoint Source Pollution Plan since 1998. The Poteau River, Black Fork, and Fourche Maline within the PRW flow into Lake Wister, which is an important reservoir for recreation, fishing, and waterfowl hunting for residents and tourists around eastern Oklahoma. The purpose of …

Low-Cost Solar Collectors To Pre-Heat Ventilation Air In Broiler Houses, Yi Liang, Michael Janorschke, Chad E. Hayes

Biological and Agricultural Engineering Faculty Publications and Presentations

The objective of the study was to evaluate the effect of a low-cost solar collector to pre-heat ventilation air in commercial broiler buildings on supplemental heating demand and air quality during the cold season. Six black fabric-based solar collectors of 36 m(2) each were installed on the south-facing rooftop of a broiler house. The solar collectors provided fresh warm air into the house during the ON cycle of minimum ventilation and during the OFF cycle of minimum ventilation when the temperature under the collectors met certain criteria. The daily cumulative duration of solar collectors in operation averaged 125 and 133 …

Cradle-To-Grave Life Cycle Assessment Of Production And Consumption Of Pulses In The United States, Prathamesh A. Bandekar, Ben Putman, Greg Thoma, Marty Matlock

Biological and Agricultural Engineering Faculty Publications and Presentations

Environmental impact associated with production and consumption of pulses in the United States was evaluated using life cycle assessment (LCA). The system boundary was set to cradle-to-grave with a functional unit of 60 g (dry basis) of pulses consumed in a US household. Varieties of pulses modeled in the study included field pea (Pisum sativum), lentil (Lens culinaris), chickpea (Cicer arietinum), and dry bean. Three methods of cooking pulses at the consumer stage tested in the study were cooking in open vessel on electric cooking range (OVC), cooking in stovetop pressure cooker on electric cooking range (SPC), and cooking in …

Socio-Technical Changes For Sustainable Rice Production: Rice Husk Amendment, Conservation Irrigation, And System Changes, Benjamin R. K. Runkle, Angelia L. Seyfferth, Matthew C. Reid, Matthew A. Limmer, Beatriz Moreno-Garcia, Colby W. Reavis, Jasquelin Pena, Michele L. Reba, M. Arlene A. Adviento-Borbe, Shannon R. M. Pinson, Chris Isbell

Biological and Agricultural Engineering Faculty Publications and Presentations

Rice is a staple food and primary source of calories for much of the world. However, rice can be a dietary source of toxic metal(loid)s to humans, and its cultivation creates atmospheric greenhouse gas emissions and requires high water use. Because rice production consumes a significant amount of natural resources and is a large part of the global agricultural economy, increasing its sustainability could have substantial societal benefits. There are opportunities for more sustainable field production through a combination of silicon (Si) management and conservation irrigation practices. As a Si-rich soil amendment, rice husks can limit arsenic and cadmium uptake, …

Development Of A Cyberinfrastructure For Assessment Of The Lower Rio Grande Valley North And Central Watersheds Characteristics, Linda Navarro, Ahmed Mahmoud, Andrew Ernest, Abdoul Oubeidillah, Jessica Johnstone, Ivan Rene Santos Chavez, Christopher Fuller

Biological and Agricultural Engineering Faculty Publications and Presentations

Lower Laguna Madre (LLM) is designated as an impaired waterway for high concentrations of bacteria and low dissolved oxygen. The main freshwater sources to the LLM flow from the North and Central waterways which are composed of three main waterways: Hidalgo/Willacy Main Drain (HWMD), Raymondville Drain (RVD), and International Boundary & Water Commission North Floodway (IBWCNF) that are not fully characterized. The objective of this study is to perform a watershed characterization to determine the potential pollution sources of each watershed. The watershed characterization was achieved by developing a cyberinfrastructure, and it collects a wide inventory of data to identify …

Response-To-Failure Analysis Of Global Food System Initiatives: A Resilience Perspective, Prince Agyemang, Ebenezer Miezah Kwofie

Biological and Agricultural Engineering Faculty Publications and Presentations

International food system initiatives have led the efforts to combat the threats to global food security resulting from the failure of the current food systems. This study set out to investigate and assess the contributions of global food system initiatives in tackling the food system challenges. In assessing the food system initiatives, we develop a three-step methodology for Food System Initiative (FSI) selection and then conduct a qualitative evaluation using relevant indicators based on food system failure narratives. Furthermore, the authors synthesize present literature in the context of the extent to which coronavirus disease 2019 (COVID-19) pandemic has compounded food …