Bioresource and Agricultural Engineering Commons^™

Can Generative Ai Make Farming Decisions? Current Status And Future Pathways: A Case Study In Row Crop Production With Chatgpt, Nipuna Chamara, Yufeng Ge, Joe Luck, Yu Pan, Saleh Taghvaeian, Cory Walters, Christopher Proctor, Daran Rudnick, Daren Redfearn

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The agricultural decision-making process is experience-based, knowledge-dependent, time-sensitive, complex, and driven by historical data. Planting, fertilization, irrigation, and chemigation are key categories in farm decision-making, and currently there is no one-shot decision-support tool that covers all these activities. Generative Artificial Intelligence (AI) models are more advanced than traditional machine learning and deep learning models. These models have been trained on vast amounts of data from the internet, allowing them to accept unstructured data in various forms and generate human-like text, solutions to problems, and scenario predictions. Given this capability, we became interested in exploring the potential of generative AI in …

Dried Water Treatment Residuals Might Be An Option To Reduce Soluble Reactive Phosphorus Release From Soils, Katie B. Mckay

Biological and Agricultural Engineering Undergraduate Honors Theses

Nonpoint source pollution from agricultural landscapes contributes to freshwater eutrophication, with legacy phosphorus (P) in soils potentially driving soluble reactive phosphorus (SRP) losses to surface waters. The objectives of this study were to evaluate SRP adsorption by dried water treatment residuals (WTRs) produced by Beaver Water District, quantify reductions in soil SRP release across increasing WTR application rates, and compare dried WTR performance to prior WTR studies.

Dried WTRs (~98% solids) were assessed using batch sorption experiments and soil core incubations. Phosphorus sorption was measured by mixing WTRs with CaCl₂ solutions containing increasing SRP concentrations and fitting results to …

Design And Fabrication Of A Scaled Automated Dairy Farm Model: A Report, Md Towfiqur Rahman

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Summary

This study investigates how ventilation systems work in dairy barns and builds a scaled model to support education and research. The project is designed to help students from the University of Nebraska–Lincoln (UNL), K-12 learners, and researchers in animal science, veterinary medicine, and engineering gain visual experience with dairy facility components and processes. Different ventilation methods were studied, leading to the design of a 1/64-scale tunnel-ventilated dairy barn meant for 60 Holstein Friesian cows. Barn dimensions were set based on real Holstein cow measurements to ensure proper cow comfort, while airflow requirements were calculated and scaled down. Miniature fans …

From Floodplain To Floodplain: Analyzing Stream And Riparian Restoration Methodologies And Impacts, Noah P. Lane

Theses and Dissertations--Biosystems and Agricultural Engineering

Stream restoration is a relatively new scientific field. Currently, there is not a definitive methodology for performing restorations that all professionals in industry and academia can agree upon. This has allowed for multiple ideologies to be developed and altered that vary by geographic location and the professional using them. In addition to the methodologies used, the publicly available design guidance published by state government organizations also varies by regulatory authority, method of analysis, ecoregion, and restoration objectives. In some cases, design guidance is replicated from a different geographical area and may not satisfy local needs or existing site conditions. Since …

Deep Learning Framework For Sow Posture Classification From Depth Images: Comparison With Data Transformation Techniques, Models, And Cross-Validation, Md Towfiqur Rahman, Tami M. Brown-Brandl, Gary A. Rohrer, Sudhendu R. Sharma, Suzanne M. Leonard, Yeyin Shi

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Piglet preweaning mortality (PWM) in the United States averages ≈14–15%, with sow overlaying causing about one third proportion of these losses. This research aimed to develop and evaluate deep learning models to classify six sow postures using depth images to monitor behaviors linked to overlaying risk. Top-down depth images were captured with Kinect V2^® cameras at 10 frames min^-1 for five consecutive days (2 days before to 2 days after farrowing), yielding 26,506 training images from 18 sows, 17,901 testing images from 12 sows, and 4,697 additional images from three sows in diagonal stalls for external validation. Three …

Feasibility Of Corn Stover For Biogas Production In Northwestern Illinois: A Case Study Of Jo Daviess And Carroll Counties, Anthony Amotoe-Bondzie

Masters Theses

The growing demand for renewable energy and sustainable waste management has intensified interest in agricultural residues such as bioenergy feedstocks. This study evaluated the feasibility of converting corn stover into biogas through anaerobic digestion (AD) in Jo Daviess and Carroll Counties, Illinois, with consideration of the Savanna Industrial Park as a potential centralized processing hub. Although corn stover represents one of the largest biomass resources in the United States, this research identifies a critical gap between theoretical availability and practically recoverable feedstock. Using a mixed-methods framework, the study integrates biomass quantification, methane yield modeling, economic analysis, and policy assessment. Results …

Locations Of Outfalls In The Indian River Lagoon And Lake Worth Lagoon, Florida, Kelly M. Kibler, Melinda J. Donnelly, Vincent Encomio, Madison Giuntoli, Manisha Thenuwara, Brice Bennett, Laura Andrade Barron, Mariam Sonbol, Wynter Raine Seppala, Namritha Ramakrishnan, Jennifer Jordan Báez, Beth Orlando, Irene Arpayoglou, Melissa Meisenburg

Indian River Lagoon Shorelines

The spatial dataset: UCF_Outfalls_IRL_LWL.shp was created under grants from the Indian River Lagoon National Estuaries Program and Florida Sea Grant. These projects cumulatively led to creation of a living shoreline restoration prioritization model and hydrodynamic habitat suitability models for 1,550 km (963 miles) of estuarine shorelines in Indian River Lagoon (IRL) and Lake Worth Lagoon (LWL).

The dataset presented here includes the location of outfalls identified throughout the study region and general characteristics of the shoreline where they were identified.

Seagrass Persistence In The Indian River Lagoon And Lake Worth Lagoon, Florida, Kelly Kibler, Melinda Donnelly, Vincent Encomio, Madison Giuntoli, Manisha Thenuwara, Brice Bennett, Laura Andrade Barron, Mariam Sonbol, Wynter Raine Seppala, Namritha Ramakrishnan, Jennifer Jordan Báez, Beth Orlando, Irene Arpayoglou, Melissa Meisenburg

Indian River Lagoon Shorelines

The spatial dataset: UCF_seagrasspersistence_IRL_LWL.shp was created with support from the Indian River Lagoon National Estuaries Program and Florida Sea Grant. These projects cumulatively led to creation of a living shoreline restoration prioritization model and hydrodynamic habitat suitability models for 1,550 km (963 miles) of estuarine shorelines in Indian River Lagoon (IRL) and Lake Worth Lagoon (LWL). The dataset presented herein represents persistence of seagrass throughout waters of the IRL and LWL.

Living Shoreline Prioritization And Hydrodynamic Habitat Suitability Models For Restoration In The Indian River Lagoon And Lake Worth Lagoon, Florida, Kelly M. Kibler, Melinda J. Donnelly, Vincent Encomio, Madison Giuntoli, Manisha Thenuwara, Brice Bennett, Laura Andrade Barron, Mariam Sonbol, Wynter Raine Seppala, Namritha Ramakrishnan, Jennifer Jordan Báez, Beth Orlando, Irene Arpayoglou, Melissa Meisenburg

Indian River Lagoon Shorelines

The spatial dataset: UCF_shorelinemodel_IRL_LWL.shp, was created with support from the Indian River Lagoon National Estuaries Program and Florida Sea Grant. These projects cumulatively led to creation of a living shoreline restoration prioritization model and hydrodynamic habitat suitability models for 1,550 km (963 miles) of estuarine shorelines in Indian River Lagoon and Lake Worth Lagoon.

The dataset presented herein includes:

1. shoreline data from >15,000 transects collected in the field,
2. shoreline wave climate data created through hydrodynamic modeling and frequency analysis of historic data,
3. categorization of potential risk for shoreline boat wake impact,
4. persistence of seagrass within 210 m of the shoreline, …

Reengineering Resilience: Bio-Resilience Bonds For Financing Microbial Infrastructure And Climate Equity, Reece Buckley

COP30

This policy proposal introduces Bio-Resilience Bonds (BRBs), a performance-based financial instrument designed to monetise microbial ecosystem services as measurable climate infrastructure. Microbial ecosystems are crucial for climate resilience, yet they are often overlooked in mainstream adaptation f inance frameworks. Their ability to regulate carbon and nitrogen cycles, reduce methane emissions and enhance soil and water stability (Delgado-Baquerizo et al., 2016) makes them essential assets for climate mitigation and adaptation. With global adaptation needs exceeding £2.7 trillion (UNEP, 2024), this oversight indicates a systemic failure to recognise biology as a form of infrastructure. BRBs transform microbial outputs into localised key performance …

Legacy Nutrient Transport By Overland Sheet Flow, John E. Gilley, Ryan P. Mcgehee, Kenneth M. Wacha

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The transport of phosphorus (P) and nitrogen (N) from sites containing varying quantities of legacy nutrients was evaluated in this investigation. The data that were examined were collected during four previously reported field hydrologic studies performed in eastern Nebraska. Additional flow was introduced to the top of the rainfall simulation plots to replicate runoff conditions occurring along a hillslope. It was observed that both P and N delivery were influenced by runoff rate on sites where beef cattle manure or inorganic fertilizer had been applied. Legacy nutrient delivery appeared to have been influenced by the quantity of nutrients released at …

Kinetic Growth Rate Analysis Of Coelastrella Sp. In Aquaculture Wastewater., Rob Skarvan

Master of Engineering Theses

The demand for sustainable food and energy production continues to rapidly rise. Utilizing aquaculture wastewater as microalgae growth medium is a potential opportunity for nutrient recycling and industrial symbiosis, but more research is required to understand how best to design and scale-up a dual-purpose facility. This study investigates the growth of Coelastrella sp. in aquaculture wastewater compared to industry-standard growth medium BG-11 and modified tap water as controls. Though cell size and pigment density varied throughout media, aquaculture wastewater performed very comparably to BG-11 as a microalgae culture broth.

The Monod equation can model Coelastrella sp. growth based …

Behavioral Insights Impacting Preweaning Mortality, Md Towfiqur Rahman, G. A. Rohrer, S. R. Sharma, Y. Shi, S. M. Leonard, Tami M. Brown-Bandl

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Conclusions

This study investigated the average time spent on posture behaviors (lying, kneeling, sitting, standing) of sows by analyzing the effects of time segments, farrowing crate types, parity, heat lamp configurations, and mortality groups. Sow posture behaviors were significantly influenced by mortality, parity, crate type, heat lamps, and day category. High mortality sows spent less time lying and more time standing events. Parity 1, 2, 3 sows were more active, spending more time kneeling in transitions, lying, and sitting events. Sows in TSL crate had longer lateral right lying and standing events, while ESCSL crates sows had longer sitting events. …

Crop2cloud Platform: Real-Time Data Integration For Agricultural Water Monitoring, Bryan Nsoh, Abia Katimbo, Kendall Dejonge, Wei-Zhen Liang, Hongzhi N. Guo, Yufeng Ge, Derek M. Heeren, Yeyin Shi, Xin Qiao, Daran R. Rudnick, Hope Njuki Nakabuye, Birru Girma, Isa Kabenge, Joshua Wanyama

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Efficient water management is vital for sustainable agriculture, yet integrating real-time data for precise irrigation remains a challenge. This study designed the Crop2Cloud (C2C) platform, a system that leverages advanced sensors using Internet of Things (IoT), edge and cloud computing techniques, and computed Water Stress Indices (WSIs) and machine learning models (i.e., fuzzy logic), to provide scalable and real-time irrigation decisions. The C2C platform aggregates several data including Volumetric Water Content (VWC) from TDR sensors (Acclima Inc., US) installed at four multiple depths, canopy temperatures (Tc) measured by Infrared Radiometers (IRTs) (Apogee Instruments, US), as well as weather information and …

Nutrient Transport By Overland Sheet Flow On Sites Containing Swine Slurry, John E. Gilley

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Nutrients in agricultural runoff may cause offsite environmental impacts. The objective of this investigation was to examine nutrient transport by overland sheet flow on sites containing swine slurry. Data examined in this study was collected during field rainfall simulation tests conducted on cropland sites in southeast Nebraska, USA. Inflow was added to the top of experimental plots in four successive increments to simulate runoff rates occurring at greater downslope distances. Runoff rates on the experimental sites ranged from 2.3 to 21.2 L min⁻¹ and maximum equivalent downslope distances varied from 5 to 108 m. Phosphorus (P) and nitrogen (N) …

Development Of Bio-Based Coating Materials For Environmentally Friendly Controlled-Release Nitrogen Fertilizer Applications, Anne Carolyne Mendonca Cidreira

Electronic Theses and Dissertations

No abstract provided.

Transport Of Nutrients By Overland Flow On Sites Containing Beef Cattle Manure, John E. Gilley, Ryan P. Mcgehee, Kenneth M. Wacha

Department of Agricultural and Biological Systems Engineering: Faculty Publications

In an inductive metastudy, we investigated the effects of varying rates of overland sheet flow on the transport of phosphorus (P) and nitrogen (N) from sites containing beef cattle manure. The analyzed data were collected during previously reported field rainfall simulation investigations conducted on cropland sites and a beef cattle feedlot in the US state of Nebraska. During the experiments, inflow was incrementally added to the top of the experimental plots to simulate runoff rates occurring at greater downslope distances. Runoff rates on the experimental plots ranged from 2.9 to 22.9 Lmin⁻¹, and the maximum equivalent downslope distances …

Firelog: An Open-Source, Low-Cost System For Temperature Logging During Wildland Fires With High Spatial And Temporal Resolution, Nipuna Chamara, Yufeng Ge, Sabrina E. Russo

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Measuring flame, air, and soil temperatures during wildland fires, including wildfires and controlled burns in land management contexts, is crucial for research and applications in fire ecology, safety, and management in a wide array of ecosystems, from grasslands to forests. However, open-source and commercial systems are needed for measuring and logging flame and air temperatures that are user-friendly, economical, modular, and customizable. This paper details the design, development, and validation of the FireLog system. Laboratory validation experiments demonstrated high measurement accuracy, with a minimum coefficient of determination (R2) of 0.98 and the highest observed root mean square error (RMSE) of …

Impact Of Automated Controlled Tile Drainage On Field Discharge Water, Soil Moisture, And Crop Yield In Southeastern South Dakota, Joshua Becker

Electronic Theses and Dissertations

Automated controlled tile drainage is an innovative approach to water management, using dynamic weir settings programmed to drain water out of the tile system if it encroaches into the root zone at pre-programmed depths and duration. While past studies have indicated potential yield and water quality benefits of controlled drainage, there has been very little research into the performance of automated controlled drainage. In addition to overall performance, there is a gap in knowledge of management settings to optimize yield and water quality benefits. Two experiments, one plot-scale and one modeling, were conducted to assess the impact of automated controlled …

Salinity Effects On Cu(Ii) Bioremediation By Chlamydomonas Reinhardtii Microalgae, Jennifer Hughes

Honors Undergraduate Theses

Microalgae offer a sustainable approach to wastewater treatment by removing pollutants such as excess nutrients, CO₂, and heavy metals. Among various species, Chlamydomonas reinhardtii shows strong potential in removing Cu(II) ions from wastewater. In addition, salinity stress in C. reinhardtii has been linked to morphological and metabolic changes that enhance lipid and phytochemical production. While salinity stress has been studied for enhancing biofuel production, its impact on microalgal removal of heavy metals, particularly Cu(II), remains largely unexplored. Understanding how varying salinity conditions affect both algal growth and the efficiency of Cu(II) remediation could provide critical insights for improving integrated wastewater …

Lignin Cationization For The Removal Of Phosphates And Nitrates From Effluents Of Wastewater Treatment Plants, Fannyuy V. Kewir

LSU Master's Theses

The removal of phosphates and nitrates from wastewater treatment plant (WWTP) effluents is important for preventing pollution of receiving waters. In this study, we chemically modified alkaline lignin (aLN) with quaternary ammonium groups to obtain biodegradable cationic lignin (cLN). We characterized the cLN and tested its efficacy for removing phosphates and nitrates in a lab setting and on field-collected WWTP samples. Adsorption isotherm and kinetic studies were performed in aqueous media, and the effects of several variables (contact time, pH, initial concentration, and adsorbent dose) were investigated. The Langmuir isotherm described phosphate and nitrate adsorption well, with R2 values of …

Jovial Family Farm Facilitates Intergenerational Learning Opportunities Through Urban Farming, Maera Williams

Purdue Journal of Service-Learning and International Engagement

Maera Williams is a sophomore in Environmental and Ecological Engineering at Purdue University. She joined the Engineering Projects in Community Service (EPICS) Urban Farming team as a freshman and now serves as project manager of ten undergraduate students collaborating with Jovial Family Farm to design and develop three indoor hydroponics systems for a laboratory space on their property in Broad Ripple, IN. Jovial Family Farm is a nonprofit organization founded by Drs. Bobbie and Brian Jellison with the mission to provide senior citizens, their families, and their communities with meaningful engagement opportunities on an intergenerational scale through urban agricultural activities. …

Internet Of Things-Based Automated Solutions Utilizing Machine Learning For Smart And Real-Time Irrigation Management: A Review, Bryan Nsoh, Abia Katimbo, Hongzhi Guo, Derek M. Heeren, Hope Njuki Nakabuye, Xin Qiao, Yufeng Ge, Daran R. Rudnick, Joshua Wanyama, Erion Bwambale, Shafik Kiraga

Department of Agricultural and Biological Systems Engineering: Faculty Publications

This systematic review critically evaluates the current state and future potential of real-time, end-to-end smart, and automated irrigation management systems, focusing on integrating the Internet of Things (IoTs) and machine learning technologies for enhanced agricultural water use efficiency and crop productivity. In this review, the automation of each component is examined in the irrigation management pipeline from data collection to application while analyzing its effectiveness, efficiency, and integration with various precision agriculture technologies. It also investigates the role of the interoperability, standardization, and cybersecurity of IoT-based automated solutions for irrigation applications. Furthermore, in this review, the existing gaps are identified …

Targeted Weed Management Of Palmer Amaranth Using Robotics And Deep Learning (Yolov7), Amlan Balabantaray, Shaswati Behera, Cheetown Liew, Nipuna Chamara, Mandeep Singh, Amit J. Jhala, Santosh Pitla

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Effective weed management is a significant challenge in agronomic crops which necessitates innovative solutions to reduce negative environmental impacts and minimize crop damage. Traditional methods often rely on indiscriminate herbicide application, which lacks precision and sustainability. To address this critical need, this study demonstrated an AI-enabled robotic system, Weeding robot, designed for targeted weed management. Palmer amaranth (Amaranthus palmeri S. Watson) was selected as it is the most troublesome weed in Nebraska. We developed the full stack (vision, hardware, software, robotic platform, and AI model) for precision spraying using YOLOv7, a state-of-the-art object detection deep learning technique. The …

Irrigation Pumping Plants: Energy Consumption And Pumping Plant Performance [Class Handout], Derek M. Heeren, Saleh Taghvaeian, Abia Katimbo, Xin Qiao

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Irrigation can be a large contributor to energy consumption on an irrigated farm. It is important to understand factors that impact irrigation energy use and to identify opportunities to reduce energy consumption. This class handout introduces a set of equations for calculating energy consumption for an irrigation pumping plant based on flow conditions and pump efficiency. It also presents typical values for motor performance (including both electric motors and internal combustion engines) in both SI and USCS units. Finally, the handout introduces the concept of a field evaluation of an irrigation pumping plant along with the Nebraska Pumping Plant Performance …

A Step By Step Shoreline Attribute Analysis For Selected Waterbodies In The Gulf Of Mexico To Promote The Use Of Living Shorelines, Christoper Boyd, Xutong Niu, Taylor R. Horn

Journal of Extension

Living Shorelines are being promoted by coastal extension professionals as a more resilient nature-based solution to control shoreline erosion. The Virginia Institute of Marine Sciences Living Shorelines Suitability Model was run in selected waterbodies within the Gulf of Mexico.

The locations of the selected water bodies, coastal data sets used, and shoreline protection recommendations generated by the Model are presented. A step-by-step statistical analysis conducted through ArcGIS Pro from these selected coastal shorelines will illustrate how extension professionals with novice GIS experience can use the model output to promote living shorelines to coastal property owners, city managers, and developers.

Gsp-Ai: An Ai-Powered Platform For Identifying Key Growth Stages And The Vegetative-To-Reproductive Transition In Wheat Using Trilateral Drone Imagery And Meteorological Data, Liyan Shen, Guohui Ding, Robert Jackson, Mujahid Ali, Shuchen Liu, Arthur Mitchell, Yeyin Shi, Xuqi Lu, Jie Dai, Greg Deakin, Katherine Anna Frels, Haiyan Cen, Yufeng Ge, Ji Zhou

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Wheat (Triticum aestivum) is one of the most important staple crops worldwide. To ensure its global supply, the timing and duration of its growth cycle needs to be closely monitored in the field so that necessary crop management activities can be arranged in a timely manner. Also, breeders and plant researchers need to evaluate growth stages (GSs) for tens of thousands of genotypes at the plot level, at different sites and across multiple seasons. These indicate the importance of providing a reliable and scalable toolkit to address the challenge so that the plot-level assessment of GS can be …

Optimized Gadolinium-Do3a Loading In Raftpolymerized Copolymers For Superior Mr Imaging Of Aging Blood–Brain Barrier, Hunter A. Miller, Aaron Priester, Evan T. Curtis, Krista Hilmas, Ashleigh Abbott, Forrest Kievit, Anthony J. Covertine

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The development of gadolinium-based contrast agents (GBCAs) has been pivotal in advancing magnetic resonance imaging (MRI), offering enhanced soft tissue contrast without ionizing radiation exposure. Despite their widespread clinical use, the need for improved GBCAs has led to innovations in ligand chemistry and polymer science. We report a novel approach using methacrylate-functionalized DO3A ligands to synthesize a series of copolymers through direct reversible addition-fragmentation chain transfer (RAFT) polymerization. This technique enables precise control over the gadolinium content within the polymers, circumventing the need for subsequent conjugation and purification steps, and facilitates the addition of other components such as targeting ligands. …

Sensitization Of Europium Oxide Nanoparticles Enhances Signal-To- Noise Over Autofluorescence With Time-Gated Luminescence Detection, Hunter Miller, Jessica Q. Wallace, Hui Li, Xing-Zhong Li, Ana De Bettencourt-Dias, Forrest Kievit

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Clinical translation of nanoparticle-based therapeutics has been limited, and a lack of preclinical delivery characterization is partly to blame, limiting our understanding of the mechanisms of failure. The improvement of the preclinical delivery assessment requires nanoparticles with higher detectability. This work focused on the exploration of several aromatic carboxylic ligands (terephthalic acid, quinaldic acid, and kynurenic acid) for the sensitization of europium oxide nanoparticles with a long emission lifetime to overcome cellular autofluorescence, a key confounder of detection in luminescence-based bioimaging. A facile one-pot synthesis and ligand exchange process generated and sensitized ultrasmall Eu₂O₃ cores. As reflected …

Fabrication Of A Low-Cost Drum Seeder For Paddy, Muhammad Rashed Al Mamun, Md Rejaul Karim, Md Towfiqur Rahman, Md Janibul Alam Soeb, Md Imranul Alam

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Rice is a staple food crop. Bangladesh produces it extensively which raised the nation into the fourth-largest rice-grower in the world. Transplanting or direct seeding is a major task in rice cultivation where the manual transplanting method requires a huge labor cost which is beyond control in a peak season. Although mechanical rice transplanters become popularization land preparation and seedling rising as a pre transplanting task is costly and labor-intensive. On the other hand, manual broadcasting and machine seeding direct method still exist due to the above method’s problem. Considering spacing accuracies for intercultural operation, drum seeders are an easy …