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Wavelet Packet Analysis Of Amino Acid Chain Sequences In The Proteins Of Mesophile And Thermophile Bacteria, John B. Linehan 2016 DePaul University

Wavelet Packet Analysis Of Amino Acid Chain Sequences In The Proteins Of Mesophile And Thermophile Bacteria, John B. Linehan

DePaul Discoveries

In this project, proteins from mesophile and thermophile bacteria with similar functions are compared. Initially it is assumed that the differences between these two bacteria are substantial to be recognized in the amino acid sequences of their proteins. These differences would then lead to the creation of a statistical measure, which would allow the classification of a protein to its corresponding bacteria. By assigning hydrophobicity values from three well-known scales, a discrete numeric signal is produced for each protein, which is analyzed using wavelet packets. The result of this method indicates that the overall hydrophobic tendencies of these two bacteria ...


Expanded Parameters In The Self-Organized Critical Forest Fire Model, Riley Self 2016 Linfield College

Expanded Parameters In The Self-Organized Critical Forest Fire Model, Riley Self

Senior Theses

The forest fire model has been used to test the theory of Self-Organized Criticality as a model of complexity. The goal is to search for scale invariance in randomly generated forest fires using a computer simulation. In a previous model by B. Drossel and F. Schwabl,1 power-law behavior was seen when the nearest neighbors to a tree on fire catch on fire, and it has been assumed that if further trees also catch fire, then it will still exhibit self-organized criticality, showing scale invariance. Testing this assumption aids to the exploration of the applicability of self-organized criticality because the ...


Classical Transport In Disordered Systems, Antonios Papaioannou 2016 Graduate Center, City University of New York

Classical Transport In Disordered Systems, Antonios Papaioannou

All Graduate Works by Year: Dissertations, Theses, and Capstone Projects

This thesis reports on the manifestation of structural disorder on molecular transport and it consists of two parts. Part I discusses the relations between classical transport and the underlying structural complexity of the system. Both types of molecular diffusion, namely Gaussian and non-Gaussian are presented and the relevant time regimes are discussed. In addition the concept of structural universality is introduced and connected with the diffusion metrics. One of the most robust techniques for measuring molecular mean square displacements is magnetic resonance. This method requires encoding and subsequently reading out after an experimentally controlled time, a phase ϕ to the ...


Modeling The Behavior Of The Graphene To Liquid Interfaces In An Electrolytic Liquid, Caitlin Duffner 2016 Linfield College

Modeling The Behavior Of The Graphene To Liquid Interfaces In An Electrolytic Liquid, Caitlin Duffner

Senior Theses

Understanding the mechanism for charge transfer between a graphene biosensor and its electrodes within an electrolyte solution is vital to better understand the sources of electrical noise in the system. By measuring the effective resistance and capacitance of the system at different frequencies, it is possible to develop a circuit model of the system's electrical behavior. This model provides a deeper understanding of the fundamental interactions that occur in a top-­gated graphene device and provides opportunities to improve a signal. To reduce noise created at the liquid to graphene interface, a buffer layer of Yttrium Oxide was applied ...


Effect Of Electrolyte Concentration On The Capacitance And Mobility Of Graphene, Flint A. Martino 2016 Linfield College

Effect Of Electrolyte Concentration On The Capacitance And Mobility Of Graphene, Flint A. Martino

Senior Theses

The use of graphene field-effect transistors as a biosensor is increasingly being used to study biological phenomena, due to the sensitivity and low reactivity of graphene. To further improve sensitivity in biological environments, we examined how different salt concentrations affect the mobility of capacitance of the graphene. Samples were also measured after an annealing process. We report on the positive correlation between sensitivity and electrolyte concentration and speculate on methods to improve future detectors. Mobility of the device was found to change from 1.07*103cm2/ (V*s) in de-ionized water to 2.78*103cm ...


Modeling A Circuit That Represents An Electrolytic Solution At Different Concentrations, Daniel C. Miller II 2016 Linfield College

Modeling A Circuit That Represents An Electrolytic Solution At Different Concentrations, Daniel C. Miller Ii

Senior Theses

Electrodes are often placed within bio samples in order to measure the electrical changes that occur within a system. In order to understand the information provided through the microelectrodes, this paper will describe an experiment to measure the capacitance and the resistance between two micro electrodes as an electrolyte becomes more concentrated. This resulted in a capacitance and a resistance that increased and decreased exponentially, respectively, as an electrolyte concentration increased logarithmically.


Koh Etching Of (100) Si Wafer, No 1, Inayat Bajwa 2016 Quattrone Nanofabrication Facility

Koh Etching Of (100) Si Wafer, No 1, Inayat Bajwa

Protocols and Reports

No abstract provided.


Procesy Cieplne I Aparaty (Lab), Wojciech Budzianowski 2016 Wroclaw University of Technology

Procesy Cieplne I Aparaty (Lab), Wojciech Budzianowski

Wojciech Budzianowski

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Morphological And Material Effects In Van Der Waals Interactions, Jaime C. Hopkins 2016 University of Massachusetts Amherst

Morphological And Material Effects In Van Der Waals Interactions, Jaime C. Hopkins

Doctoral Dissertations May 2014 - current

Van der Waals (vdW) interactions influence a variety of mesoscale phenomena, such as surface adhesion, friction, and colloid stability, and play increasingly important roles as science seeks to design systems on increasingly smaller length scales. Using the full Lifshitz continuum formulation, this thesis investigates the effects of system materials, shapes, and configurations and presents open-source software to accurately calculate vdW interactions.

In the Lifshitz formulation, the microscopic composition of a material is represented by its bulk dielectric response. Small changes in a dielectric response can result in substantial variations in the strength of vdW interactions. However, the relationship between these ...


Physical And Electrochemical Area Determination Of Electrodeposited Ni, Co, And Nico Thin Films, Matthew Gira, Kevin Tkacz, Jennifer R. Hampton 2016 Hope College

Physical And Electrochemical Area Determination Of Electrodeposited Ni, Co, And Nico Thin Films, Matthew Gira, Kevin Tkacz, Jennifer R. Hampton

Faculty Publications

The surface area of electrodeposited thin films of Ni, Co, and NiCo was evaluated using electrochemical double-layer capacitance, electrochemical area measurements using the [Ru(NH3)6]3+/[Ru(NH3)6]2+ redox couple, and topographic atomic force microscopy (AFM) imaging. These three methods were compared to each other for each composition separately and for the entire set of samples regardless of composition. Double-layer capacitance measurements were found to be positively correlated to the roughness factors determined by AFM topography. Electrochemical area measurements were found to be less correlated with measured roughness factors as well as applicable only to ...


Voltage Driven Translocation Of Polyelectrolytes Through Nanopores, Byoung-jin Jeon 2016 University of Massachusetts - Amherst

Voltage Driven Translocation Of Polyelectrolytes Through Nanopores, Byoung-Jin Jeon

Doctoral Dissertations May 2014 - current

Recently, translocations of polyelectrolyte molecules through membrane channel protein pores or solid-state nanopores have been actively studied. Although the polymer translocation researches emerged mainly due to technological demands in terms of genome sequencing, the detailed physics of the single molecule transport through a narrow channel remains fully understood. To obtain further understanding of common features of the translocation process, this thesis focuses on the effects of salt concentration, pore-polymer electrostatic interactions, and externally applied electric field on the voltage-driven polymer translocations. The study is carried out by performing a series of systematically designed experiments using alpha-hemolysin (αHL) protein pore to ...


Quantifying The Locomotion Of C. Elegans And Their Response To Photo Stimulation, Ian Seddon 2016 Rollins College

Quantifying The Locomotion Of C. Elegans And Their Response To Photo Stimulation, Ian Seddon

Honors Program Theses

Identifying the function of different locomotive genes in model organisms is crucial for genetics research. One popular approach is to analyze the behavior and motion of animals in hope of understanding subtle genetic or neural mechanisms. The nematode C. elegans has emerged as an increasingly popular organism for the study of sensory systems, specifically photo transduction, due to the fact it is still photosensitive without having eyes. Light stimulus has been shown to elicit evasive locomotive behavior in C. elegans, however little has been done to quantify this movement. Modeling the worm motion as a static sine wave, we used ...


Designing Active Granular Squares, Christopher C. Olson 2016 University of Massachusetts Amherst

Designing Active Granular Squares, Christopher C. Olson

Masters Theses May 2014 - current

The goal of this thesis has been to find a means of i) designing an active square particle, and ii) continuously varying its degree of activity with the objective of understanding the effects of activity on the various phases of granular matter. The motivations, results and limitations of our methods of creating active particles are discussed in this thesis. The applicability of a stochastic model based on the Langevin equation in 2D as well as implications for future experiments are also discussed.


Perspectives For Low-Carbon Electricity Production Until 2030: Lessons Learned From The Comparison Of Local Contexts In Poland And Portugal, Wojciech Budzianowski, Joao Gomes 2015 Wroclaw University of Technology

Perspectives For Low-Carbon Electricity Production Until 2030: Lessons Learned From The Comparison Of Local Contexts In Poland And Portugal, Wojciech Budzianowski, Joao Gomes

Wojciech Budzianowski

This paper compares perspectives for low-carbon electricity production in two EU member states - Poland and Portugal until 2030. Electricity production capacities, carbon emissions of electricity production, and production cost of electricity (COE) of Poland and Portugal are analyzed. The dilemmas of investments into low-carbon electricity production technologies relying on: (i) renewable energy sources (RES), (ii) nuclear fuel, and (iii) fossil fuels integrated with carbon capture and sequestration (CCS) are discussed. Roadmap 2050 recommends about 40% decarbonization of electricity generation by 2030 and 100% by 2050. Based on electricity production mix forecast for 2030 carbon emissions of electricity are estimated at ...


Inżynieria Chemiczna Lab., Wojciech Budzianowski 2015 Wroclaw University of Technology

Inżynieria Chemiczna Lab., Wojciech Budzianowski

Wojciech Budzianowski

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Order Form Resrb 2017, Wojciech M. Budzianowski 2015 Wroclaw University of Technology

Order Form Resrb 2017, Wojciech M. Budzianowski

Wojciech Budzianowski

No abstract provided.


Renewable Energy And Sustainable Development (Resd) Group, Wojciech M. Budzianowski 2015 Wroclaw University of Technology

Renewable Energy And Sustainable Development (Resd) Group, Wojciech M. Budzianowski

Wojciech Budzianowski

No abstract provided.


Conference Proceedings, Resrb 2016, June 22-24, 2016, Wrocław, Poland, Wojciech M. Budzianowski 2015 Wroclaw University of Technology

Conference Proceedings, Resrb 2016, June 22-24, 2016, Wrocław, Poland, Wojciech M. Budzianowski

Wojciech Budzianowski

No abstract provided.


A1, Wojciech M. Budzianowski 2015 Wroclaw University of Technology

A1, Wojciech M. Budzianowski

Wojciech Budzianowski

No abstract provided.


Abstract Template Resrb 2017, Wojciech M. Budzianowski 2015 Wroclaw University of Technology

Abstract Template Resrb 2017, Wojciech M. Budzianowski

Wojciech Budzianowski

No abstract provided.


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