Biomedical Engineering and Bioengineering Commons^™

The Igipi Ontological Framework: Integrating Gene Interactions With Protein Interactions, Bill Andreopoulos, Aijun An, Xiangji Huang

Faculty Publications, Computer Science

No abstract provided.

Laser And Led Effects On The Proliferation Rate Of Periodontal Ligament Fibroblasts, Allen J. Job

Loma Linda University Electronic Theses, Dissertations & Projects

PURPOSE: To compare the effectiveness of a Gallium Aluminum Arsenide (GaAlAs) diode laser and a light emitting diode (LED) on periodontal ligament fibroblast cell proliferative rates.

METHODS and MATERIALS: PDLF obtained from freshly extracted permanent teeth were cultured under standard conditions until a subconfluent monolayer was present. The next section took 5 days to complete. On day 1, the initial cell concentration of 700 uL/cm² was plated on 96-well assay plates and placed in a CO₂ incubator at 37° C for 24 hours. On day 2, cell counts were first verified using hemocytometry then were irradiated using an …

Genetic Programming For Multitimescale Modeling, Kumara Sastry, Duane D. Johnson, David E. Goldberg, Pascal Bellon

Duane D. Johnson

A bottleneck for multitimescale thermally activated dynamics is the computation of the potential energy surface. We explore the use of genetic programming (GP) to symbolically regress a mapping of the saddle-point barriers from only a few calculated points via molecular dynamics, thereby avoiding explicit calculation of all barriers. The GP-regressed barrier function enables use of kinetic Monte Carlo to simulate real-time kinetics (seconds to hours) based upon realistic atomic interactions. To illustrate the concept, we apply a GP regression to vacancy-assisted migration on a surface of a concentrated binary alloy (from both quantum and empirical potentials) and predict the diffusion …

A Numerical Method For Obtaining An Optimal Temperature Distribution In A 3d Triple-Layered Cylindrical Skin Structure, Le Zhang

Doctoral Dissertations

In recent years, it has been interesting to research hyperthermia combined with radiation and cytotoxic drugs to enhance the killing of tumors. The crucial problem is that when heating the tumor tissues, one needs to keep the surrounding normal tissue below a temperature that will produce harm. Thus, it is important to obtain the temperature field of the entire treatment region. The objective of this dissertation is to develop a numerical model for obtaining an optimal temperature distribution in a 3D triple-layered cylindrical skin structure. To this end, we pre-specify the temperatures to be obtained at the center and perimeter …

Room-Temperature Atmospheric Pressure Plasma For Biomedical Applications, Mounir Laroussi, Xinpei Lu

Electrical & Computer Engineering Faculty Publications

As low-temperature non-equilibrium plasmas come to play an increasing role in biomedical applications, reliable and user-friendly sources need to be developed. These plasma sources have to meet stringent requirements such as low temperature (at or near room temperature), no risk of arcing, operation at atmospheric pressure, preferably hand-held operation, low concentration of ozone generation, etc. In this letter, we present a device that meets exactly such requirements. This device is capable of generating a cold plasma plume several centimeters in length. It exhibits low power requirements as shown by its current-voltage characteristics. Using helium as a carrier gas, very little …

Direct Least-Squares Ellipse Fitting, Jane Courtney, Annraoi Depaor

Conference Papers

Many biological and astronomical forms can be best represented by ellipses. While some more complex curves might represent the shape more accurately, ellipses have the advantage that they are easily parameterised and define the location, orientation and dimensions of the data more clearly. In this paper, we present a method of direct least-squares ellipse fitting by solving a generalised eigensystem. This is more efficient and more accurate than many alternative approaches to the ellipse-fitting problem such as fuzzy c-shells clustering and Hough transforms. This method was developed for human body modelling as part of a larger project to design a …

A High -Order Finite Difference Method For Solving Bioheat Transfer Equations In Three-Dimensional Triple -Layered Skin Structure, Haofeng Yu

Doctoral Dissertations

Investigations on instantaneous skin burns are useful for an accurate assessment of burn-evaluation and for establishing thermal protections for various purposes. Meanwhile, hyperthermia with radiation is important in the treatment of cancer, and it is essential for developers and users of hyperthermia systems to predict, and interpret correctly the biomass thermal and vascular response to heating. In this dissertation, we employ the well-known Pennes' bioheat transfer equation to predict the degree of skin burn and the temperature distribution in hyperthermia cancer treatment.

A fourth-order compact finite difference scheme is developed to solve Pennes' bioheat transfer equation in a three-dimensional single …

Food Based Approaches For A Healthy Nutrition In Africa, Mamoudou Hama Dicko

Pr. Mamoudou H. DICKO, PhD

The latest estimates of the FAO demonstrate the problems of the fight against hunger. These problems are manifested by the ever-increasing number of chronically undernourished people worldwide. Their numbers during the 1999-2001 period were estimated at about 840 million of which 798 million live in developing countries. Sub-Saharan Africa alone represented 198 million of those. In this part of Africa the prevalence of undernourishment ranges from 5-34%, causing growth retardation and insufficient weight gain among one third of the children under five years of age and resulting in a mortality of 5-15% among these children. Malnutrition resulting from undernourishment is …

Astronaut Eva Exposure Estimates From Cad Model Spacesuit Geometry, Giovanni De Angelis, Brooke M. Anderson, William Atwell, John E. Nealy, Gary D. Qualls, John W. Wilson

Mathematics & Statistics Faculty Publications

Ongoing assembly and maintenance activities at the International Space Station (ISS) require much more extravehicular activity (EVA) than did the earlier U.S. Space Shuttle missions. It is thus desirable to determine and analyze, and possibly foresee, as accurately as possible what radiation exposures crew members involved in EVAs will experience in order to minimize risks and to establish exposure limits that must not to be exceeded. A detailed CAD model of the U.S. Space Shuttle EVA Spacesuit, developed at NASA Langley Research Center (LaRC), is used to represent the directional shielding of an astronaut; it has detailed helmet and backpack …

Studies In Cardiac Defribrillation, Eamonn Mckenna

Masters

Cardiac disease resulting in cardiac arrest is one of the most common fatal diseases in the developed world. Defibrillation is the medical procedure used to correct the irregular cardiac rhythm (ventricular fibrillation (VF)) which is very often detected in patients suffering cardiac arrest. In the work reported in this thesis, two aspects of the defibrillation of patients in VF were examined. The first area of investigation concentrated on the use of multiple defibrillation electrodes to be used during closed chest (transthoracic) defibrillation. This study was carried out in a saline bath and centred on “focusing” electric fields from perimeter electrodes …

Compact Supercell Method Based On Opposite Parity For Bragg Fibers, Wang Zhi, Ren Guobin, Lou Shuquin, Liang Weijun, Shangping Guo

Electrical & Computer Engineering Faculty Publications

The supercell- based orthonormal basis method is proposed to investigate the modal properties of the Bragg fibers. A square lattice is constructed by the whole Bragg fiber which is considered a supercell, and the periodical dielectric structure of the square lattice is decomposed using periodic functions (cosine). The modal electric field is expanded as the sum of the orthonormal set of Hermite-Gaussian basis functions based on the opposite parity of the transverse electric field. The propagation characteristics of Bragg fibers can be obtained after recasting the wave equation into an eigenvalue system. This method is implemented with very high efficiency …

Modular Machine Learning Methods For Computer-Aided Diagnosis Of Breast Cancer, Mia Kathleen Markey '94

Doctoral Dissertations

The purpose of this study was to improve breast cancer diagnosis by reducing the number of benign biopsies performed. To this end, we investigated modular and ensemble systems of machine learning methods for computer-aided diagnosis (CAD) of breast cancer. A modular system partitions the input space into smaller domains, each of which is handled by a local model. An ensemble system uses multiple models for the same cases and combines the models' predictions.

Five supervised machine learning techniques (LDA, SVM, BP-ANN, CBR, CART) were trained to predict the biopsy outcome from mammographic findings (BIRADS™) and patient age based on a …

Bottom-Up Design Of Artificial Neural Network For Single-Lead Electrocardiogram Beat And Rhythm Classification, Srikanth Thiagarajan

Doctoral Dissertations

Performance improvement in computerized Electrocardiogram (ECG) classification is vital to improve reliability in this life-saving technology. The non-linearly overlapping nature of the ECG classification task prevents the statistical and the syntactic procedures from reaching the maximum performance. A new approach, a neural network-based classification scheme, has been implemented in clinical ECG problems with much success. The focus, however, has been on narrow clinical problem domains and the implementations lacked engineering precision. An optimal utilization of frequency information was missing. This dissertation attempts to improve the accuracy of neural network-based single-lead (lead-II) ECG beat and rhythm classification. A bottom-up approach defined …

Phase Imaging: Deep Or Superficial?, Nancy Burnham, O Behrend, L Odoni, J Loubet

Nancy A. Burnham

Phase images acquired while intermittently contacting a sample surface with the tip of an atomic force microscope cantilever are not easy to relate to material properties. We have simulated dynamic force curves and compared simulated with experimental results. For some cantilever–sample combinations, the interaction remains a surface effect, whereas for others, the tip penetrates the sample significantly. Height artifacts in the “topography” images, and the role of the sample stiffness, work of adhesion, damping, and topography in the cantilever response manifest themselves to different extents depending on the indentation depth.

Phd Thesis (Doctorat De Spécialité): Université De Ouagadougou, 1999. Dr. Mamoudou H. Dicko. Purification Et Propriétés Physico-Chimiques Des Enzymes De Curculigo Pilosa, Gladiolus Klattianus Et Boscia Senegalensis Catalysant L'Hydrolyse Des Polysaccharides (Amidon Et Béta-Glucanes), Mamoudou H. Dicko Prof.

Pr. Mamoudou H. DICKO, PhD

The objective of this study was the research of novel and inexpensive sources of polysaccharides degrading enzymes such as amylases and glucanases from local plants in order to justify their biotechnological applications. The isolation of two l3-amylases and an endo-1,3-ß-D-glucanase was reached using common protein purification methods such as buffer extraction, ammonium sulfate fractionation, ionexchange and gel filtration chromatographies. The methods used were simple and easily reproducible, suggesting the possibilfty of large-scale production. ln the crude extract of Curculigo pilosa tuber, only ß-amylase was detected as starch degrading enzyme and its activity was approximately 282 Uig of fresh material. The …

Elastic And Shear Moduli Of Single-Walled Carbon Nanotube Ropes, Nancy Burnham, Jean-Paul Salvetat, G Andrew D Briggs, Jean-Marc Bonard, Revathi Bacsa, Andrzej Kulik, Thomas Stöckli, László Forró

Nancy A. Burnham

Carbon nanotubes are believed to be the ultimate low-density high-modulus fibers, which makes their characterization at nanometer scale vital for applications. By using an atomic force microscope and a special substrate, the elastic and shear moduli of individual single-walled nanotube (SWNT) ropes were measured to be of the order of 1 TPa and 1 GPa, respectively. In contrast to multiwalled nanotubes, an unexpectedly low intertube shear stiffness dominated the flexural behavior of the SWNT ropes. This suggests that intertube cohesion should be improved for applications of SWNT ropes in high-performance composite materials.

Friction Anisotropy And Asymmetry Of A Compliant Monolayer Induced By A Small Molecular Tilt, Nancy Burnham, M Liley, D. Gourdon, Dimitrios Stamou, U Meseth, T Fischer, C Lautz, H Stahlberg, H Vogel, C Duschl

Nancy A. Burnham

Lateral force microscopy in the wearless regime was used to study the friction behavior of a lipid monolayer on mica. In the monolayer, condensed domains with long-range orientational order of the lipid molecules were present. The domains revealed unexpectedly strong friction anisotropies and non-negligible friction asymmetries. The angular dependency of these effects correlated well with the tilt direction of the alkyl chains of the monolayer, as determined by electron diffraction and Brewster angle microscopy. The molecular tilt causing these frictional effects was less than 15 degrees, demonstrating that even small molecular tilts can make a major contribution to friction.

Stiffness Of Measurement System And Significant Figures Of Displacement Which Are Required To Interpret Adhesional Force Curves, Nancy Burnham, Kunio Takahashi, Hubert Pollock, Tadao Onzawa

Nancy A. Burnham

Force curves obtained from an elastic contact theory are shown and compared with experimental results. In the elastic contact theory, a pin-on-disk contact is assumed and the following interaction are taken into consideration; (i) elastic deformation, (ii) the specific energy of adhesion in the area of the contact, which is expressed as the difference between the surface energies and the interface energy, (iii) the long-range interaction outside the area of contact, assuming the additivity of the Lennard-Jones type potential, and (iv) another elastic term for the measurement system such as the cantilever stiffness of an atomic force microscope (AFM). In …

Pulse Coupled Neural Networks For The Segmentation Of Magnetic Resonance Brain Images, Shane L. Abrahamson

Theses and Dissertations

This research develops an automated method for segmenting Magnetic Resonance (MR) brain images based on Pulse Coupled Neural Networks (PCNN). MR brain image segmentation has proven difficult, primarily due to scanning artifacts such as interscan and intrascan intensity inhomogeneities. The method developed and presented here uses a PCNN to both filter and segment MR brain images. The technique begins by preprocessing images with a PCNN filter to reduce scanning artifacts. Images are then contrast enhanced via histogram equalization. Finally, a PCNN is used to segment the images to arrive at the final result. Modifications to the original PCNN model are …

Evaluation Of Segmentation For Bone Structures In 3d Rendering Of Ultrasound Residual Limb Images, Min C. Baker

Theses and Dissertations

Prosthetists today widely practice manual socket fitting, which produces subjective, inconsistent results. To address this problem, the Computerized Anthropometry Research and Design (CARD) Laboratory is developing a computer-aided socket design system that acquires ultrasound datasets of an amputee's residual limb, creates a 3D model, and helps identify load- bearing and pressure-relief areas. This research project focuses on providing 3D visualization of a residual limb to support the CARD Laboratory's efforts. Creating the 3D model of the skin and two bone contours requires two major steps: segmentation to identify the objects of interest and a surface tracking algorithm to generate the …

Scanning Local‐Acceleration Microscopy, Nancy Burnham, A. Kulik, G. Gremaud, P. Gallo, F. Oulevey

Nancy A. Burnham

By adapting a scanning force microscope to operate at frequencies above the highest tip–sample resonance, the sensitivity of the microscope to materials’ properties is greatly enhanced. The cantilever’s behavior in response to high‐frequency excitation from a transducer underneath the sample is fundamentally different than to its low‐frequency response. In this article, the motivations, instrumentation, theory, and first results for this technique are described.

Materials’ Properties Measurements: Choosing The Optimal Scanning Probe Microscope Configuration, Nancy Burnham, G Gremaud, A Kulik, P Gallo, F Oulevey

Nancy A. Burnham

Rheological models are used to represent different scanning probe microscope configurations. The solutions for their static and dynamic behavior are found and used to analyze which scanning probe microscope configuration is best for a given application. We find that modulating the sample at high frequencies results in the best microscope behavior for measuring the stiffness of rigid materials, and that by modulating the tip at low frequencies and detecting the motion of the tip itself (not its position relative to the tip holder) should be best for studying compliant materials in liquids.

Computer-Aided Diagnosis Of Mammographic Masses, William E. Polakowski

Theses and Dissertations

A new Model-Based Vision algorithm was developed to find possibly cancerous regions of interest (ROIs) in digitized mammograms and to correctly identify the malignant masses. This work has shown a sensitivity of 92 percent for locating malignant ROIs. The database contained 272 images (12 bit, 1OO microns) with 36 malignant and 53 benign mass images. Of the 53 biopsied benign cases, 74 percent were correctly classified. The Focus of Attention (segmentation) Module algorithm used a physiologically motivated Difference of Gaussians (DoG) filter to highlight mass-like regions in the mammogram. The Index Module labeled the regions by their hypothesized class: large …

Nanosubharmonics: The Dynamics Of Small Nonlinear Contacts, Nancy Burnham, A Kulik, G Gremaud, Gad Briggs

Nancy A. Burnham

We observed the generation of subharmonics and chaos in a nanometer-sized mechanical contact. To first order, the behavior matches that of macroscopic systems, with some intriguing secondary differences. As the occurrence of periodic behavior (subharmonics) is related to the coefficient of restitution, it may be possible to image local energy dissipation with nanometer resolution.

Development Of A Mammographic Image Processing Environment Using Matlab, John L. Kelley

Theses and Dissertations

Breast cancer is a disease that accounts for a disturbingly large number of deaths in females each year. Its prevalence is a topic of concern to all of us since it can affect our families, friends, and coworkers. Although mammographic screening is the most effective method currently available for the early detection of breast cancer, it is far from being an infallible procedure. Mammographic reading is error prone, partly because of the complexity of the task and partly because of the variability in human performance. Computers offer high reproducibility, and when used as an adjunct by the radiologist, may improve …

The Afit Multielectrode Array For Neural Recording And Simulation: Design, Testing, And Encapsulation, James R. Reid Jr

Theses and Dissertations

A two-dimensional, X-Y addressable, multiplexed array of 256 electrodes (16 x 16) has been fabricated using conventional semiconductor processing techniques. The individual electrodes are 16O microns x 160 microns, approximating the size of the cortical columns; the overall array size is 3910 microns x 3910 microns. The array has been fitted to a chronically implantable package and tested for several days in a simulated neural environment. EEG-like data were collected successfully from individual electrodes in the array. This array improves on a previous design of a 16 electrode (4 x 4) array that was chronically implanted on the cortex of …

Burnham, Colton, And Pollock Reply, Nancy Burnham, Rj Colton, Hm Pollock

Nancy A. Burnham

It is not necessary to obtain permission to reuse this article or its components as it is available under the terms of the Creative Commons Attribution 3.0 License. This license permits unrestricted use, distribution, and reproduction in any medium, provided attribution to the author (s) and the published article's title, journal citation, and DOI are maintained. Please note that some figures may have been included with permission from other third parties. It is your responsibility to obtain the proper permission from the rights holder

Work-Function Anisotropies As An Origin Of Long-Range Surface Forces, Nancy Burnham, R Colton, H Pollock

Nancy A. Burnham

Unusual effects noticed in previous force microscopy data are explained by a model based on work-function anisotropies and their associated patch charges. Measurable forces between macroscopic bodies can be due to the interaction of patch charges, with important consequences in the fields of surface forces, contact mechanics, adhesion, Schottky barriers, and the surface properties of insulators.

Interpretation Issues In Force Microscopy, Nancy Burnham, Richard Colton, Hubert Pollock

Nancy A. Burnham

In this paper, we will discuss force microscopy (FM) and its potential for determining mechanical properties of thin films. We will introduce the basic principles of FM, and demonstrate how FM can be used to determine materials properties as well as image surface topography, both with nanonewton or sub‐nanonewton force resolution and sub‐nanometer position resolution. As FM is still a new field, not all of the questions concerning interpretation have been fully answered. We will elucidate four current issues that must be resolved before the full potential of FM can be realized. They are: (1) the role of water vapor …

On The Electrochemical Etching Of Tips For Scanning Tunneling Microscopy, Nancy Burnham, J. Ibe, P. Bey Jr., S. Brandow, R. Brizzolara, D. Dilella, K. Lee, C. K. Marrian, R. Colton

Nancy A. Burnham

The sharpness of tips used in scanning tunneling microscopy(STM) is one factor which affects the resolution of the STM image. In this paper, we report on a direct‐current (dc) drop‐off electrochemicaletching procedure used to sharpen tips for STM. The shape of the tip is dependent on the meniscus which surrounds the wire at the air–electrolyte interface. The sharpness of the tip is related to the tensile strength of the wire and how quickly the electrochemical reaction can be stopped once the wire breaks. We have found that the cutoff time of the etch circuit has a significant effect on the …