Biology Commons^™

Relationship Between Morphological And Behavioral Laterality In Astyanax Mexicanus, Allison Lendman, Michael Tobler, Erik Johnson

Undergraduate Research Symposium

Populations within the Astyanax genus have experienced extreme differences in environment, leading to distinct morphological adaptations. The cave populations of these fish are eyeless and have acquired fixed, cranial asymmetries. We explored a possible relationship between this physical asymmetry and behavioral laterality. We tested 28 adult fish, 14 male and 14 female, from the Pachón cave in controlled behavioral trials. We found that both sexes demonstrated behavioral laterality, observed as a consistent left-turn bias in these trials. This supports the hypothesis that these populations display behavioral laterality that is correlated to their physical asymmetries. Ongoing research comparing behavioral patterns in …

Building Genetic And Culturing Tools For The Understudied Soil Bacterium E. Flagellatus, Aaron Butler, Brenda Pratte, Lon Chubiz

Undergraduate Research Symposium

Soil bacteria play essential roles in nutrient cycling, yet many abundant groups remain poorly characterized due to challenges in cultivation and genetic manipulation. One such organism is Edaphobacter flagellatus, a member of the Acidobacteriota frequently detected in soil environments but lacking well-developed experimental tools. To address this limitation, our laboratory has generated a genome-wide mutant library using the Tn5 transposon, enabling random disruption of genes across the population.

This project aims to establish culture conditions necessary to support the use of this library for functional genomic studies. In particular, defined minimal media can impose selective pressures that reveal …

Winter Contents Of Tree Cavities In Oak Woodland Habitats, Lucy V. Roth, Addy Yoder, Jalene M. Lamontagne Phd

Undergraduate Research Symposium

Woodpeckers create cavities in dead and decaying trees and branches of live trees, many of which are used by a range of other animals, and are thus called “ecosystem engineers”. A species of conservation concern in the midwest is the red-headed woodpecker (RHWO). RHWO in the upper midwest are facultative migrators meaning some individuals stay in their territories over winter and others migrate south. Most tree-cavity research is done during the breeding season, leading to a knowledge gap of their use in the non-breeding season; therefore, studying them in winter could help us understand their ecological impact. RHWO require food …

Sex-Related Differences In Fingerprint Minutiae Counts Among Secondary School Students In Sagamu, Ogun State, Nigeria, Olukayode Olushola Odubela, Osonuga Ifabunmi Oduyemi, Dr Kazeem Adeyinka Adeboyejo, Opeyemi Abel Bamgbose

AUIQ Complementary Biological System

Background: Dermatoglyphic minutiae are permanent epidermal ridge characteristics widely utilized in forensic identification and biometric science. Previous studies have demonstrated sex-related differences in fingerprint ridge morphology and ridge count, with females generally exhibiting higher ridge count than males. However, quantitative minutiae-based studies among Nigerian adolescents remain limited. This study evaluated sex-related and bilateral variations in fingerprint minutiae among secondary school students in Sagamu, Ogun State, Nigeria. Methods: This cross-sectional analytical study involved 300 apparently healthy students aged 14–18 years, recruited from an initial pool of 318 students assessed for eligibility across Batoro Community Grammar School, Remo Secondary School, and Remo …

Bacterial Biomass As A Versatile Platform For Functional Materials: Structural Insights And Sustainable Applications, Hasan M. Agha

AUIQ Complementary Biological System

Bacterial biomass has emerged as a versatile material with strong potential in environmental, material, and biotechnological applications, as well as broader uses such as bioplastics, packaging materials, and agricultural systems, owing to its rapid growth, controllable production, and surface chemistry enriched with carboxyl, hydroxyl, amino, phosphate, sulfate, and sulfhydryl groups. These features enable multiple interaction mechanisms, including electrostatic attraction, ion exchange, surface complexation, hydrogen bonding, and π –π interactions, supporting applications in pollutant removal, wastewater treatment, composite development, and bioenergy systems. Bacterial biomass can be sourced from natural environments, industrial fermentation, and waste streams, particularly activated sludge, making it compatible …

Evaluation Of Polycyclic Aromatic Hydrocarbon Profiles In Fermented Artemisia Annua Leaf Extract, Mabitine Daniel Malo, Ohemu Adaofoyi Isaiah, Igaznda Terhemba James, Obamuwe Rebecca Joy, Ugber Erdoo Charity, Itodo Monday Christopher

Journal of Bioresource Management

This study evaluated the presence, profile and concentration of polycyclic aromatic hydrocarbons (PAHs) in the fermented leaf extract of Artemisia annua, a medicinal plant widely used for its antimalarial and skin-benefiting properties. Given the plant’s increased use in Nigerian traditional medicine, this research examines how fermentation a process known to enhance bioactive compound availability may influence PAH levels, which are of concern due to their carcinogenic, mutagenic, and teratogenic effects. The A. annua leaves were fermented using Saccharomyces cerevisiae cultures and subsequently analyzed using Gas Chromatography-Mass Spectrometry (GC-MS) to detect and quantify PAHs. The analysis identified 24 distinct PAH …

Multivariate Ecological Assessment Of Flora Of Village Karri Haider, District Tank, Kp, Numan Khan, Muhammad Azeem, Muhammad Adnan Hamza, Muhammad Aleem, Arshad Rasool, Ammara Wakeel, Sehrish Sadia

Journal of Bioresource Management

Spatial and temporal patterns of vegetation change are influenced by multiple factors, including the physical environment, land-use history, prior disturbance, and initial vegetation composition. The primary aim of this study was to understand floristic vegetation features, species diversity, and the classification of plant communities in Village Karri Haider, District Tank, Khyber Pakhtunkhwa (KP). Samples were collected from each transect using quadrats of 1 m × 1 m for herbs. Soil from three quadrats was mixed to make composite samples, and soil elements were quantified through laboratory analyses. Two surveys were conducted from July to December, 2023. In the first survey, …

Establishing Reference Values Of Haematological And Biochemical Blood Parameters In Kundhi Buffalo, Jahan Zaib Ahmed, Jamila Soomro, Moolchand Malhi, Mansoor Tariq, Saba Parveen, Abdul Salam Khoso

Journal of Bioresource Management

This study aims to establish haematological, biochemical parameters of healthy Kundhi buffalo calves from different areas of Hyderabad, Pakistan, under field conditions. The study was conducted on one hundred twenty (120) buffalo calves of both sexes, ranging in age from 03 to 12 months were chosen at random and divided into three age groups: 03-06 months, 07-09 months and10-12 months with both males and females represented in each group. Female calves from 07-09 months had the highest levels of hematological parameters such as hemoglobin concentration, packed cell volume, white blood cell count, red blood cell count and platelets count, where …

Molecular Mechanisms, Evidence Levels, And Translational Prospects Of Natural Products In Non-Small Cell Lung Cancer: A Critical Narrative Review, Sakhawat Hussain, Muhammad Yousif, Habibullah Janyaro, Zahid Iqbat Rajput, Mohammad Farooque Hassan

Journal of Bioresource Management

Non-small cell lung cancer (NSCLC) accounts for approximately 80–85% of lung cancers and remains a major cause of cancer mortality. Molecular heterogeneity, acquired resistance to targeted therapies, immune escape, and treatment-related toxicity continue to limit durable disease control. Natural products and standardized botanical formulations have contributed substantially to anticancer drug discovery and are being investigated as complementary approaches in NSCLC; however, the strength of evidence varies markedly across experimental and clinical settings. This critical narrative review evaluates molecular mechanisms, preclinical evidence, human studies, and translational barriers relevant to natural-product-based interventions in NSCLC. A structured literature update was performed in August …

The Use Of Gadgets And Learning Motivation Among Grade Xi Students In Biology Learning At Sma Negeri 5 Palu, Yulia Citra, Mohammad Jamhari, Masrianih Masrianih, Lestari M.P Alibasyah, Mursito S. Bialangi, Yulia Windarsih

Jurnal Pendidikan Sains

This study aims to describe the profile of gadget use and learning motivation among Grade XI students in biology learning at SMA Negeri 5 Palu and to explore students’ and teachers’ experiences of gadgets as learning support tools and potential sources of digital distraction. A qualitative descriptive design was employed, supported by descriptive questionnaire profiling. A total of 74 students completed a 50-item questionnaire on gadget use and learning motivation, while 10 students and two biology teachers participated in semi-structured interviews. Questionnaire data were analyzed using frequencies and percentages, while interview data were analyzed thematically. The descriptive findings showed that …

The Application Of The Group Investigation (Gi) Model Of Cooperative Learning To Improve Students’ Understanding Of Biodiversity In Year 10 At Sman 2 Mori Atas, Nadia Rosmita Lumako, Mohammad Jamhari, Yulia Windarsih, Lilies Lilies, Rafiqa Rafiqa, Amalia Buntu

Jurnal Pendidikan Sains

Biology instruction at SMAN 2 Mori Atas was predominantly conducted through conventional teaching practices. Preliminary observations revealed that students had difficulty understanding biodiversity concepts, and several students did not meet the minimum passing criterion of 70. These conditions highlighted the need for learning activities that promote active investigation, discussion, and conceptual connections. This classroom action research examined the use of the Group Investigation (GI) cooperative learning model to improve Grade 10 students’ classroom engagement and conceptual understanding of biodiversity, as assessed through Higher-Order Thinking Skills (HOTS) questions based on the Structure of Observed Learning Outcomes (SOLO) taxonomy. The study involved …

Readiness Of Biology Teachers In West Palu District In Implementing The Deep Learning Approach In The Merdeka Curriculum, Mutia Mutia, Gamar Shamdas, Hayyatun Mawaddah, Rafiqa Rafiqa, Raya Agni, Musdalifah Nurdin

Jurnal Pendidikan Sains

This study aimed to examine the readiness of biology teachers in West Palu District to implement the deep learning approach within the Merdeka Curriculum and to identify factors associated with their readiness. A descriptive quantitative approach was employed, with data collected through questionnaires and interviews. The study involved all six biology teachers who were actively teaching at senior high schools in West Palu District. Teacher readiness was examined across cognitive, mental, and physical dimensions. The results indicated that the teachers were generally ready to very ready to implement the deep learning approach. Cognitive readiness was particularly high, with 60% of …

The Effect Of The Problem-Based Learning Model On Biology Learning Outcomes In The 8th Grade Science Class At Smp Negeri 19 Palu, Delfi Srieviyani, Mursito S. Bialangi, Masrianih Masrianih, Abd Hakim Laenggeng, Vita Indri Febriani, Bustamin Bustamin

Jurnal Pendidikan Sains

Research background: The low student achievement in biology at SMP Negeri 19 Palu specifically regarding the human respiratory system is attributed to the conventional teaching methods still employed by teachers. Purpose and scope of the article: This study examines the effect of the Problem-Based Learning (PBL) model on students’ learning outcomes in biology, specifically regarding the human respiratory system. Method: This study used a quasi-experimental design with a quantitative approach. The research design employed was a nonequivalent control group design using two groups: an experimental group (Class VIII D) consisting of 25 students who received the PBL model, and a …

Evaluation Of Carcinogenic Contaminants (Nitrates, Ammonium, Bromates, And Chloroform) In Baghdad Drinking Water And Their Removal Using Orange Peel Powder As A Bio Sorbent, Estabraq Ali Hameed, Hiba N. Sami, Eman Waleed Hayder

Karbala International Journal of Modern Science

The present study was carried out for six months to detect the presence of some important chemical contaminants (bromate, nitrate, chloroform, and ammonium) in the drinking water of Baghdad at ten sampling sites. The study suggested the use of orange peel powder (OPP) as a cheap and eco-friendly biosorbent. X-ray diffraction (XRD) was used to confirm the amorphous nature, surface and structural characteristics of OPP. Further, SEM investigation also showed very microporous surface. FTIR (Fourier Transform Infra-Red Spectroscopy) analysis confirmed the presence of active carboxyl (-COOH) and hydroxyl (-OH) binding sites. Baseline studies show that the levels of nitrate and …

Nontarget Analysis Of The Volatile And Semivolatile Chemical Profile Of Wildland Firefighter Gear: Insight Into Occupational Exposure And Health Implications, Patrica Ivy Agorsor, Husam Kafeenah, Margaret D. Taiwo, Robin M. Verble, Michael O. Eze

Biological Sciences Faculty Research & Creative Works

Prescribed fire releases a complex mixture of volatile and semivolatile organic compounds to the environment. Firefighters are directly exposed to these hazardous mixtures through occupational activities. This study investigated the volatile and semivolatile chemical contamination profile of firefighter protective gear and the effectiveness of laundering as a decontamination strategy. Our results revealed that firefighter gear accumulated a broad spectrum of combustion-derived contaminants, predominantly composed of polycyclic aromatic hydrocarbons and derivatives, phenolic compounds, and aromatic hydrocarbons. Representative compounds identified included toluene, biphenyl, naphthalene, 1-methynaphthalene, 2-methylnaphthalene, acenaphthene, phenol, alkylated phenols, and chlorinated phenols. Quantitative analysis revealed representative combustion-derived compounds at concentrations (mean …

Bambara Groundnut (Vigna Subterranea L.) Supplementation Ameliorates The Histological Structure Of Skeletal Muscle In Protein-Deficient Mice, Raquellynda Fadilla Syafanisa, Rimonta Febby Gunanegara, Sunarti Sunarti, Siti Aeniah, Ardaning Nuriliani

Makara Journal of Science

Protein deficiency may cause histological alterations and pathological effects in skeletal muscle, leading to reduced mus-cle size and functional degeneration. Bambara groundnuts contain essential amino acids that have the potential to meet the body’s protein requirements. Therefore, this study aimed to investigate the effect of bambara groundnut supplemen-tation on skeletal muscle in protein-deficient mice. Twenty-five female mice were divided into five groups (control, pro-tein deficiency, and protein deficiency with 100, 200, and 300 g of bambara groundnut supplementation/kg of feed). The treatment was administered for 2 months. At the end of the experiment, the left gastrocnemius muscles of the mice …

Comparative Antibacterial Efficacy Of Hot Vs. Cold Aqueous Saussurea Costus Root Extracts Against Streptococcus Mutans, Fatima Adil Mohammed Hussien, Ahlam Taha Mohammed

Karbala International Journal of Modern Science

The present in vitro study assessed the antibacterial efficacy of aqueous root extracts prepared using hot and cold extraction methods of Saussurea costus against Streptococcus mutans isolates. Based on antibacterial screening results, the hot extract, which demonstrated greater antibacterial activity, was selected for subsequent cytotoxicity assessment. Cold and hot aqueous extracts were subjected to phytochemical screening, and phenolic acids and flavonoids were quantitatively assessed using High-Performance Liquid Chromatography. Antibacterial efficacy was evaluated using a resazurin-based microdilution technique to assess the minimum inhibitory concentration, followed by subculture to determine the minimum bactericidal concentration, and an agar well diffusion assay. Cytotoxicity of …

Dr. Contrarian: A Persona-Driven Conversational Ai Agent For Coaching Argumentative Reasoning In Infectious Disease Classroom Debates, Khayriyyah Mohd Hanafiah

Biology Faculty/Staff Publications

Critical thinking and persuasive communication are essential for biology graduates navigating socioscientific dilemmas. While debate pedagogy fosters problem-solving, autonomy, competence, and relatedness aligned with adult learning and self-determination theories, inexperienced students often struggle with the cognitive load and anxiety from this format. To bridge this gap, “Dr. Contrarian,” a persona-based conversational AI agent, was developed to function as an adversarial coach during debate preparation. Survey data (n = 21) adapted from the Technology Acceptance Model show that 85.7% of students found the tool easy to use, and 71.4% would use it again. Thematic analysis of metacognitive reflections suggests that while …

Comparative Analysis Of Bacterial Recbcd And Sbcc-Sbcd Systems And The Yeast Mre11-Rad50 Complex During Dna Replication, Tannos Seyedjavadi

Dissertations and Theses

Accurate completion of DNA replication when forks converge is essential for genome stability. In Escherichia coli, several proteins have been identified including RecG, ExoI, RecBCD, and SbcCD, that contribute to completing replication, and loss of these factors causes genetic instability. Eukaryotes encode proteins with homology to several E. coli completion enzymes. Mre11–Rad50 complex is structurally and functionally conserved with bacterial SbcCD, and Rrm3 shares homologous motifs with bacterial RecBCD. These proteins are often described as being involved in homologous double strand break repair. Whether they are also conserved and play a similar role as their E. coli counterparts in …

A Calibrated And Conformal Deep Learning Framework For Trustworthy Antinuclear Antibody Pattern Recognition With Selective Referral To Experts, Hussein Ali Hussein Al Naffakh, Ahmed Dheyaa Radhi, Raghdah Maytham Hameed, Muntaha Abdullah Reishaan, Fouad A. Majeed, Rozaida Ghazali

Karbala International Journal of Modern Science

Reading antinuclear antibody patterns on human epithelial cells by indirect immunofluorescence is the reference screen for systemic autoimmune rheumatic diseases, but it is slow, subjective, and variable between observers. Deep learning reaches high accuracy on this task, yet most systems return a single prediction without stating how reliable it is, which is unsafe in a diagnostic workflow. This paper presents an intelligent decision support framework built around a single calibrated uncertainty signal. That signal is the control variable for four reliability modules: confidence calibration, conformal prediction, error detection, and selective referral. A feature space out of distribution detector serves as …

Study Of Primer Efficiency And Relative Genetic Band Abundance In Different Genotypes, Mundher Kh. Jabbar

Karbala International Journal of Modern Science

This experiment was aimed to find some indicators related to primers and genetic variations. Six bread wheat genotypes were selected as the dataset. The RAPD marker technique was used with oligonucleotide primers as marker of study. The goal was to identify factors used for the relationship between primers and their ability to elicit DNA fragments through different genotypes, as well as the relative genetic band abundance among genotypes. After the designed factors, key findings emerged: in relative primer amplification rate, C1 genotype exhibited a higher relative primer amplification rate (RPAR) of fragments from OP-H01 but did not differ from OP-V19 …

Broadening The Community Of Nudibranch Enthusiasts Through Multilingual Educational Programming To Increase Climate Advocacy Engagement, Richelle Li Tanner, Cintya Felix Mendivil, Ashley Lam, Lorena Muñoz, Micah Kim, Elena G. Morales Poot, Gabrielle Keeler-May

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Environmental literacy and advocacy for environmental protections are essential components of responsible stewardship. For coastal communities, stewardship requires knowledge of ocean processes and the biological communities living within these ecosystems. While many studies highlight difficulties in engaging American audiences in environmental concern and stewardship due to hyper-individualistic societal values, tidepooling is one recreational pathway to coastal community engagement that strengthens sense of place, and therefore, responsibility to protect natural resources. We sought to broaden the tidepooling community to include more diverse voices through a participatory science program with inland city-dwelling, multilingual, and non-English speaking adults. Using nudibranchs as an environmental …

Cultivating Collaboration In Biomolviz: Key Attributes For Building A Stem Educator Community Of Practice, Pamela S. Mertz, Charmita Burch, Roderico Acevedo, Josh T. Beckham, Didem Vardar-Ulu, Kristin M. Fox, Lauren A. Genova, Rachel M. Mitton-Fry, Swati Agrawal, Daniel R. Dries, Kristen Procko

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

BioMolViz is an educational community of practice (CoP) focused on creating resources to improve biomolecular visual literacy instruction and assessment. The community of life science instructors developed in three phases, beginning with a small Core Team that emerged from a conference session and established the domain of interest for the CoP. In-person workshops, supported by short-term funding, drove the initial expansion of the community and the development of shared activities in Phase 2. This CoP was sustained through intentional choices about how members interact, collaborate, and share work. As the community matured in Phase 3, it was supported by longer-term …

Gc-Ms Profiling And Antibacterial Activity Of Cold-Macerated Garlic Extracts Against Multidrug-Resistant Uropathogens, Fatima A. Khalaf, Saeed A. Fayadh

Karbala International Journal of Modern Science

The growing number of cases of multidrug-resistant (MDR) urinary tract infections has made the clinical management of urinary tract diseases a significant challenge; therefore, the need for effective adjunctive therapies cannot be overemphasized. This study evaluated the bioactive components and antibacterial efficacy of cold-macerated garlic extracts obtained using distilled water, 70% ethanol and hexane solvents against antimicrobial-resistant urinary isolates. Out of 250 urine samples that were analyzed, 124 (49.6%) showed significant microbial growth, with Escherichia coli being the most frequently isolated organism. The results of the phytochemical screening and Gas Chromatography-Mass Spectrometry (GC-MS) analysis showed that the ethanolic extract had …

Effectiveness Of A Training Program In Enhancing The Knowledge Of Intensive Care Unit Staff Regarding Emergency Response: A Quasi-Experimental Pre–Post Study, Abdulrahman Abbas Jasim, Shimaa Gomaa, Rofida Albash, Amira B Kassem, Shahab Abdulla, Ralela Makline, Mustafa Abbass

AUIQ Complementary Biological System

Background: Timely and effective emergency response by intensive care unit (ICU) staff is critical for patient outcomes. Objective: To evaluate the effect of a structured educational intervention on ICU staff knowledge of emergency response. Methods: A one-group quasi-experimental pre–post study was conducted among ICU healthcare professionals in Thi-Qar Governorate hospitals. Participants completed a validated questionnaire assessing emergency response knowledge before and after a structured lecture covering cardiopulmonary resuscitation (CPR), airway management, bleeding control, and the ABCDE protocol. Paired statistical analyses were applied, and p-values <0.05 were considered significant. Results: Forty-one participants completed both assessments. Significant improvements were observed in recognition …

Patterns Of Autonomous And Conditional Neural Specification For The Brain And Ventral Nerve Cord In Annelida, Nicole B. Webster, Johnny A. Davila-Sandoval, Allan M. Carrillo-Baltodano, Skyler Duda, B. Duygu Özpolat, Neva P. Meyer

Biology

Evolution of central nervous systems is a long-debated topic. Similar mechanisms of conditional neural specification linked to dorsal-ventral (D–V) axis formation have been used to support homology across several taxa. We tested for autonomous versus conditional neural specification in two distantly related annelids, Capitella teleta and Platynereis dumerilii, using blastomere isolations and ablations. Our results demonstrate autonomous specification of anterior neural tissue in isolated first-quartet (1q) micromeres for both annelids. In both annelids, partial larvae derived from isolation of the somatoblast, micromere 2d, also resulted in the formation of trunk neural tissue (ventral nerve cord or VNC), suggesting that this …

Insect Monitoring Without Pitfalls: Seven Steps For Robust Insect Sensing Systems, Jamie Alison, Luca Pegoraro, Jarrett Blair, Yuval Cohen, Birgen Haest, Jacob Idec, Jacob Kamminga, Jenna Lawson, Meng Li, Leandro Aparecido Do Nascimento, Charlotte L. Outhwaite, Benjamin Rutschmann, Maximilian Sittinger, Mariana Abarca, Et Al

Biological Sciences: Faculty Publications

1. Data shortages fuel controversy about an ongoing insect biodiversity crisis. Insects are immensely diverse and functionally critical for ecosystems, yet data on their trends remain patchy and biased. Sensors, ranging from camera traps and acoustic recorders to weather radar stations, are set to transform data collection in entomol- ogy. Meanwhile, AI models that extract biological information from sensors are improving at a startling rate.

2. Realising the potential of automated monitoring means progressing from proof- of-concept studies to scalable insect sensing systems. However, stakeholders face severe operational challenges when adopting a growing suite of sensors, models and protocols for …

Towards Identifying Fear And Safety Network States Across Sex, Rhonda Kolaric

Dissertations, Theses, and Capstone Projects

Post-traumatic stress disorder (PTSD) is a trauma- and stressor-related disorder with a lifetime prevalence of 5-6% in men, and 10-12% in women (National Center for PTSD). Generalized anxiety disorder (GAD) is a highly prevalent anxiety- and depression-related psychiatric disorder with a lifetime prevalence of 1-2% in men, and 3-4% in women (National Institutes of Health). Both of these disorders disproportionately affect women. A hallmark feature of both disorders is the maladaptive generalization of fear, in which defensive responses extend beyond the original traumatic or threatening stimulus to neutral or unrelated cues. This overgeneralization can become debilitating, disrupting cognitive, emotional, and …

Analysis Of Diterpenoid Alkaloids From American Aconitum Using Lc-Ms Metabolomic Methods, Yi Zhao

Dissertations, Theses, and Capstone Projects

Analysis of Diterpenoid Alkaloids from American Aconitum Using LC-MS Metabolomic Methods

by

Yi Zhao

Advisor: Edward J. Kennelly

Aconitum plants have been used as a traditional medicine in Asian countries for millennia to treat pain, rheumatism, syncope, fever, and other conditions. These therapeutic effects are mainly due to the bioactive diterpenoid alkaloids accumulated in the roots. Comparing with the large records and studies of Asian Aconitum and their medicinal use and the broad bioactive compounds, American Aconitum has been rarely investigated, not to mention how American Aconitum has been used medicinally. Based on previous phylogenetic and chemotaxonomic studies of Aconitum …

Data Curation And Integration For Cancer Cell Line Pharmacogenomics Analysis, Meric Kinali

Graduate Masters Theses

Cancer cell lines are essential resources for connecting genomic and molecular features with drug response and identifying biomarkers. Therefore, large-scale cancer cell line resources have been growing, but this introduces challenges such as data standardization, consistent annotation, matching identifiers, cross-database integration, and a reproducible computational framework. CellMiner Cross Database (CellMinerCDB) integrates pharmacogenomic datasets from multiple resources and provides a standardized analysis of cell lines across datasets. This thesis examines cancer cell line cross-databases and their importance in pharmacogenomics, with a particular focus on CellMinerCDB. As part of this work, I developed an R package for the gCSI (Genentech Cell Line …