Elucidating Role Of Heart Valve Cells In The Aortic Valve Calcification, Mary Katherine Bailey, Adithi Amarnath

EURēCA: Exhibition of Undergraduate Research and Creative Achievement

Exhibition of Undergraduate Research and Creative Achievement (EURēCA)

Investigating The Therapeutic Potential Of Salivary Proteins For Oral Diseases, Dusa Vukosavljevic

Electronic Thesis and Dissertation Repository

ABSTRACT

Saliva is responsible for the formation of the acquired enamel pellicle (AEP), a protein

integument formed as a result of selective adsorption of salivary proteins to the enamel

surface. The AEP demonstrates an important role for modulating dental erosion as a

result of its physical properties, along with its salivary and exogenous protein

composition (Chapter 2). In addition, individual proteins that comprise the AEP have

important physiological functions. Histatin 5 (H5) has potent antifungal effect against C.

albicans, the yeast responsible for the initiation of oral candidiasis. We designed an in

vitro model and found, for the first time ...

The Effects Of Hydrostatic Pressure On Early Endothelial Tubulogenic Processes, Ryan M. Underwood

Theses and Dissertations--Biomedical Engineering

The effects of mechanical forces on endothelial cell function and behavior are well documented, but have not been fully characterized. Specifically, fluid pressure has been shown to elicit physical and chemical responses known to be involved in the initiation and progression of endothelial cell-mediated vascularization. Central to the process of vascularization is the formation of tube-like structures. This process—tubulogenesis—is essential to both the physiological and pathological growth of tissues. Given the known effects of pressure on endothelial cells and its ubiquitous presence in the vasculature, we investigated pressure as a magnitude-dependent parameter for the regulation of endothelial tubulogenic ...

Impact Of Bioparticle Recirculation In A Circulating Fluidized Bed Biofilm Reactor On Simultaneous Organic And Nitrogen Removal, Ming Li

Electronic Thesis and Dissertation Repository

The Circulating Fluidized Bed Biofilm Reactor (CFBBR), a bioparticle technology designed for biological nutrient removal, has been implemented to achieve considerable biodegradation efficiency and low sludge production, compared with activated sludge system and typical biofilm technology. The inherent advantages of bioparticle technology are enhanced substantially by the CFBBR, for example, decoupling of hydraulic retention time (HRT) from solids retention time (SRT), large specific surface area, ideal conditions for biofilm ecosystem.

In this work, bioparticle recirculation, as a novel control method for bioparticle system, was demonstrated in CFBBRs. To verify the impact of bioparticle recirculation on the reactor performance, bio-kinetics and ...

Biodiesel Production From Mixed Culture Algae Via A Wet Lipid Extraction Procedure, Ashik Sathish

All Graduate Theses and Dissertations

With world crude oil reserves decreasing and energy prices continually increasing, interest in developing renewable alternatives to petroleum-based liquid fuels has increased. An alternative that has received consideration is the growth and harvest of microalgae for the production of biodiesel via extraction of the microalgal oil or lipids. However, costs related to the growth, harvesting and dewatering, and processing of algal biomass have limited commercial scale production of algal biodiesel. Coupling wastewater remediation to microalgal growth can lower costs associated with large scale growth of microalgae. Microalgae are capable of assimilating inorganic nitrogen and phosphorous from wastewater into the biomass ...

Morphometric, Biochemical, And Raman Spectral Analyses Of Muscle Damage In Patients With Peripheral Arterial Disease: Providing Objective Criteria For Diagnosis And Treatment Monitoring, Kim Cluff

Biological Systems Engineering--Dissertations, Theses, and Student Research

Peripheral arterial disease (PAD), which affects approximately 10 million Americans, is characterized by atherosclerosis of the non-coronary arteries. PAD produces a progressive accumulation of ischemic injury to the limbs that is reflected in a gradual worsening in the myofiber morphology and oxidative damage in the gastrocnemius muscle. In this study, we evaluated the hypothesis that quantitative morphological and biochemical parameters of gastrocnemius myofibers change in a consistent manner during the progression of PAD, provide an objective grading of muscle degeneration in the ischemic limb, and correlate to clinical stage of PAD. Myofiber morphometrics were determined precisely with mathematical equations that ...

Docking Studies On Glycoside Hydrolase Family 47 Endoplasmic Reticulum Α-(1→2)-Mannosidase I To Elucidate The Pathway To The Substrate Transition State, Chandrika Mulakala, Wim Nerinckx, Peter J. Reilly

Chemical and Biological Engineering Publications and Papers

α-(1→2)-Mannosidase I from the endoplasmic reticulum (ERManI), a Family 47 glycoside hydrolase, is a key enzyme in the N-glycan synthesis pathway. Catalytic-domain crystal structures of yeast and human ERMan1s have been determined, the former with a hydrolytic product and the latter without ligands, with the inhibitors 1-deoxymannojirimycin and kifunensine, and with a thiodisaccharide substrate analog. Both inhibitors were bound at the base of the funnel-shaped active site as the unusual ¹C₄ conformer, while the substrate analog glycon is a ³S₁ conformer. In the current study, AutoDock was used to dock α-d-mannopyranosyl-(1 ...

Structural Classification Of Biotin Carboxyl Carrier Proteins, Yingfei Chen, Armando Elizondo-Noriega, David C. Cantu, Peter J. Reilly

Chemical and Biological Engineering Publications and Papers

We gathered primary and tertiary structures of acyl-CoA carboxylases from public databases, and established that members of their biotin carboxylase (BC) and biotin carboxyl carrier protein (BCCP) domains occur in one family each and that members of their carboxyl transferase (CT) domains occur in two families. Protein families have members similar in primary and tertiary structure that probably have descended from the same protein ancestor. The BCCP domains complexed with biotin in acyl and acyl-CoA carboxylases transfer bicarbonate ions from BC domains to CT domains, enabling the latter to carboxylate acyl and acyl-CoA moieties. We separated the BCCP domains into ...

Substrate Binding By The Catalytic Domain And Carbohydrate Binding Module Of Ruminococcus Flavefaciens Fd-1 Xyloglucanase/ Endoglucanase, Christopher D. Warner, Gulden Camci-Unal, Nicola L.B. Pohl, Clark Ford, Peter J. Reilly

Chemical and Biological Engineering Publications and Papers

Binding and thermodynamic properties of a carbohydrate binding module (CBM) and a glycoside hydrolase family 44 xyloglucanase/endoglucanase catalytic domain (CD) fromRuminococcus flavefaciens, both when separate and when linked to each other, have been quantified when binding various β-1,4-linked glucans and xylans. The three constructs bind cellotetraose, cellopentaose, and cellohexaose with association constants that increase with chain length. The CBM does not bind xylotetraose, xylopentaose, or xylohexaose. The CD appears to bind carboxymethylcellulose (CMC) and xylan only weakly, while the CBM and the CD/CBM bind them much more strongly than they bind the cellooligosaccharides. CMC is bound ...

Calcium Phosphate-Based Resorbable Biomaterials For Bone Regeneration, Daniel O. Costa

Electronic Thesis and Dissertation Repository

Bone defects are a prevalent problem in orthopedics and dentistry. Calcium phosphate-based coatings and nanocomposites offer unique solutions towards producing scaffolds with suitable physical, mechanical and biological properties for bone regeneration.

We developed a novel method to synthesize hydroxyapatite (HA) particles with high aspect ratio using sol-gel chemistry and hydrothermal treatment. We obtained tunable pure-phase carbonated-HA in the form of micro/nanorods and nanowires (diameters 25-800 nm). To mimic the structure of bone, HA nanowires were homogenously mixed within poly(ε-caprolactone) (PCL) to produce nanocomposites with improved mechanical properties as determined by uniaxial tensile testing.

Surface chemistry and topography of ...

An Image-Based Tool To Examine Joint Congruency At The Elbow, Emily A. Lalone

Electronic Thesis and Dissertation Repository

Post-traumatic osteoarthritis commonly occurs as a result of a traumatic event to the articulation. Although the majority of this type of arthritis is preventable, the sequence and mechanism of the interaction between joint injury and the development of osteoarthritis (OA) is not well understood. It is hypothesized that alterations to the joint alignment can cause excessive and damaging wear to the cartilage surfaces resulting in OA. The lack of understanding of both the cause and progression of OA has contributed to the slow development of interventions which can modify the course of the disease. Currently, there have been no reported ...

A Low Power Electrical Method For Cell Accumulation And Lysis Using Microfluidics, Md. Shehadul Islam

Open Access Dissertations and Theses

Microbiological contamination from bacteria such as Escherichia coli and Salmonella is one of the main reasons for waterborne illness. Real time and accurate monitoring of water is needed in order to alleviate this human health concern. Performing multiple and parallel analysis of biomarkers such as DNA and mRNA that targets different regions of pathogen functionality provides a complete picture of its presence and viability in the shortest possible time. These biomarkers are present inside the cell and need to be extracted for analysis and detection. Hence, lysis of these pathogenic bacteria is an important part in the sample preparation for ...

Metrics For Evaluating Surgical Microscope Usage During Myringotomy, Arefin M. Shamsil

Electronic Thesis and Dissertation Repository

Abstract

Although teaching and learning surgical microscope manoeuvring is a fundamental step in middle ear surgical training, currently there is no objective method to teach or assess this skill. This thesis presents an experimental study designed to implement and test sets of metrics capable of numerically evaluating microscope manoeuvrability and qualitatively assessing surgical expertise of a subject during a middle ear surgery called myringotomy. The experiment involved performing a myringotomy on a fixed cadaveric ear. As participants, experienced ear-nose-throat (ENT) surgeons and ENT surgical residents were invited. While performing the procedure, their microscope manoeuvring motions were captured as translational and ...

Development Of A Protocol To Measure Gene Expression In The Mouse Tibia, Daniel Hoover

Biomedical Eng/General Eng.

Numerous molecular factors active in bone tissue direct fracture repair and remodeling which can be altered by disease conditions such as Peripheral Arterial Disease (PAD) and Osteoporosis. Methods of molecular biology are commonly applied to investigate the expression and role of these molecular factors. This project presents a robust three-step protocol for examining gene expression in the mouse tibia. The protocol begins with isolating RNA from a flash frozen tibia sample. The isolated RNA is reverse transcribed into cDNA. Finally, PCR is performed to indentify expressed genes. Establishing this protocol will allow further research into the mechanisms of bone remodeling ...

Dynamics Of Depression Storage During Sprinkler Irrigation And Precipitation Events, Michael B. Mckinney

Biological Systems Engineering--Dissertations, Theses, and Student Research

Surface depression storage (D_s) is the volume of precipitation excess which is stored by surface microrelief features of soils. The volume of water stored in surface depressions when precipitation rate exceeds infiltration rate reduces the amount of runoff generated. Because Ds is dependent on soil microrelief, land slope, and crop residue, tillage and management practices can have a considerable impact on the magnitude of this value.

When modeling irrigation systems and surface hydrology, depression storage is often treated as a static abstraction, meaning that maximum storage volume must be filled before runoff occurs. However, several researchers have documented that ...

Two-Dimensional Blood Flow Velocity Estimation Using Ultrasound Speckle Pattern Dependence On Scan Direction And Velocity, Tiantian Xu

Biological Systems Engineering--Dissertations, Theses, and Student Research

Cardiovascular disease is the leading cause death in the United States. Although emergency surgery and medicine can be used for cardiovascular disease treatment, the survivors will suffer for it afterwards. Ultrasound blood flow measurement provides a noninvasive way for cardiovascular diseases diagnosis. In this dissertation, three algorithms for blood flow velocity measurements were investigated and optimized. Feature tracking has been previously proposed for vector velocity measurement. In Chapter 3, the optimal amplitude and time thresholds for feature extraction were investigated to minimize flow estimate variance while providing sufficient spatial and temporal coverage of flow area. A new method of lateral ...

The Characterization Of Biofilm Attachment To Metal Interfaces: Effects Of Substratum Properties, Marcel D. Mendes

Master's Theses and Project Reports

Bacteria are among the most abundant microorganisms on earth, and can be found in essentially every environment. When a clean surface is exposed to media containing planktonic bacteria, the bacterial cells will attach to the surface and aggregate to form what is known as a biofilm. Biofilms have been shown to negatively affect many industries including medical, industrial, and food science applications. While biofilms have been well characterized from a microbiology perspective, there has been much less research from a materials science standpoint. It is hypothesized that the material properties of the substratum (such as the micro-structure) have a significant ...