Biogeochemistry Commons^™

Trait-Based Assembly Of Arbuscular Mycorrhizal Fungal Communities Determines Soil Carbon Formation And Retention, Caitlyn C. A. Horsch, Pedro M. Antunes, Catherine Fahey, A. Stuart Grandy, Cynthia M. Kallenbach

Faculty Publications

Fungi are crucial for soil organic carbon (SOC) formation, especially for the more persistent mineral-associated organic C (MAOC) pool. Yet, evidence for this often overlooks arbuscular mycorrhizal fungi (AMF) communities and how their composition and traits impact SOC accumulation.

We grew sudangrass with AMF communities representing different traits conserved at the family level: competitors, from the Gigasporaceae family; ruderals, from the Glomeraceae family; or both families combined. We labeled sudangrass with 13C-CO2 to assess AMF contributions to SOC, impacts on SOC priming, and fungal biomass persistence in MAOC.

Single-family AMF communities decreased total SOC by 13.8%, likely due to fungal …

Strategies For Achieving Agriculture Carbon Peak And Carbon Neutrality In China Based On View Of Biogeochemical Cycle, Shiqi Yang, Xin Yan

Bulletin of Chinese Academy of Sciences (Chinese Version)

Biogeochemical cycle is the basic theory of matter (elements) flow among atmosphere, hydrosphere, biosphere and lithosphere, which provides important guidance to achieving the national goal of agriculture carbon peak (ACP) and agriculture carbon neutrality (ACN). As a basic industry, agriculture has large-scale temporal and spatial influence on the greenhouse effect, hence great importance should be attached to ACP and ACN in order to assist the overall strategy of achieving national carbon peak and neutrality. Based on the view of biogeochemical cycle and connotations of ACP and ACN, this article analyzes the paths to achieve ACP and ACN, and discusses the …

Meridional Survey Of The Central Pacific Reveals Iodide Accumulation In Equatorial Surface Waters And Benthic Sources In The Abyssal Plain, Rintaro Moriyasu, Kenneth M. Bolster, Dalton S. Hardisty, David C. Kadko, Mark P. Stephens, James W. Moffett

Faculty Publications

The distributions of iodate and iodide were measured along the GEOTRACES GP15 meridional transect at 152°W from the shelf of Alaska to Papeete, Tahiti. The transect included oxygenated waters near the shelf of Alaska, the full water column in the central basin in the North Pacific Basin, the upper water column spanning across seasonally mixed regimes in the north, oligotrophic regimes in the central gyre, and the equatorial upwelling. Iodide concentrations are highest in the permanently stratified tropical mixed layers, which reflect accumulation due to light-dependent biological processes, and decline rapidly below the euphotic zone. Vertical mixing coefficients (K …

Soil Microbial Legacies Influence Freeze–Thaw Responses Of Soil, Melissa A. Pastore, Aimee T. Classen, Marie E. English, Serita D. Frey, Melissa A. Knorr, Karin Rand, E. Carol Adair

Faculty Publications

Warmer winters with less snowfall are increasing the frequency of soil freeze–thaw cycles across temperate regions. Soil microbial responses to freeze–thaw cycles vary and some of this variation may be explained by microbial conditioning to prior winter conditions, yet such linkages remain largely unexplored. We investigated how differences in temperature history influenced microbial community composition and activity in response to freeze–thaw cycles.

We collected soil microbial communities that developed under colder (high elevation) and warmer (low elevation) temperature regimes in spruce-fir forests, then added each of these soil microbial communities to a sterile bulk-soil in a laboratory microcosm experiment. The …

Dust Deposition To The Bermuda Region: A Comparison Of Estimates Using Seasonally-Resolved Measurements Of Aluminum In Water-Column, Aerosol, And Rain Samples, Tara Williams, Peter Sedwick, Bettina Sohst, Joe Resing, Kristen Buck, Salvatore Caprara, Rod Johnson, Dan Ohnemus, Ben Twining, Alessandro Tagliabue

College of Sciences Posters

Dust deposition is a major source of bioactive trace elements to the surface ocean, yet this flux remains difficult to constrain. Previously, time-averaged dust flux has been estimated using surface ocean dissolved aluminum (DAl) concentrations, assumed values for aerosol aluminum solubility (%Al_S), and the residence time of DAl in the surface mixed layer (SML). We apply this method to estimate dust deposition in the Bermuda Atlantic Time-series Study (BATS) region using water-column DAl data from cruises in 2019, which is compared with direct flux estimates from contemporaneous measurements of aluminum in aerosols and rain collected on Bermuda. Seasonal …

The Identification Of New Directions For The Research Of Adhd, Andrew Burkhardt

Legacy Theses & Dissertations (2009 - 2024)

ADHD is a disease commonly associated with childhood; however, recently adult cases of ADHD have been on the rise. The cause of ADHD is not yet known but can be treated. The issue with the treatment of ADHD is the use of heavily restricted stimulants. The use of these medications carry many health risks, most notability addiction. ADHD also has many co-morbidities like anxiety and autism. This makes ADHD a complex disorder, making the identification of a cause difficult. However, by identifying how drugs used to treat ADHD work, combined with genetic testing, areas of interest start to appear. An …

Epiphytic Diatom Production On The Seagrass Thalassia Testudinum In Northern Gulf Of Mexico, Jonathan L. Venable, Shayna A. Sura, Jeffrey W. Krause

Gulf and Caribbean Research

No abstract provided.

Quantifying The Carbon Stored And Sequestered By The Trees On Pomona College’S Campus, Paola A. Giron-Carson

Scripps Senior Theses

We are experiencing a climate crisis that must be confronted with strategic mitigation. Pomona College contributes to the climate crisis through its emissions for which there is a baseline record. However there is no baseline record of the climate mitigation currently performed by the trees on Pomona’s campus through carbon storage. This study seeks to determine a current baseline quantity of carbon stored and sequestrated by Pomona’s trees as well as possible courses of climate mitigation for Pomona College to take. Initial information gathering was conducted through interviews with several stakeholders. This study was conducted using data collected prior to …

Beaver Dam Analogs (Bdas) Alter Carbon Pools, Fluxes, And Concentrations Of Intermountain Headwater Streams, Hilary Schultz

Graduate Student Theses, Dissertations, & Professional Papers

Beaver dam analogs (BDAs) have emerged as a climate adaptation and restoration strategy for water resource management in the drought-prone Western U.S., yet the focus has been on their influence on water quantity, overlooking effects on broader ecological components. By increasing water residence time and facilitating sediment retention, BDAs have the potential to influence carbon pools, fluxes, and concentrations. To examine the influence of BDAs on instream and riparian organic C and trace gases, we studied three intermountain headwater streams restored with BDAs two years after restoration during the summer of 2021. We found that there were subtle differences in …

Food Waste Storage Gaseous Emissions Detection And Quantification Using Infrared Spectroscopy, Ryley A. Burton-Tauzer

Cal Poly Humboldt theses and projects

A growing interest in sustainable waste management and the implementation of new policies have prompted a shift towards alternative resource recovery methods for organic waste, including food waste. To effectively assess alternative food waste treatment scenarios, it is important to evaluate the life cycle impacts associated with each scenario. The storage phase of food waste, encompassing its accumulation in kitchens, and storage in bins for collection and transportation, has been overlooked as a source of greenhouse gases in previous studies. This investigation aimed to identify the greenhouse gases emitted during the initial five-day period of low-oxygen storage. An open dynamic …

Understanding The Impacts Of Freshwater Fluxes On The Biogeochemistry Of The Coastal Arctic: A Case Study Of Prudhoe Bay, Francesca Lingo

Dissertations and Theses

The Arctic region, undergoing significant environmental changes due to rapid warming, faces alterations in air temperatures, melting permafrost, declining sea ice, and changes in riverine inputs. These shifts have profound implications for Arctic coastal ecology and biogeochemical cycles. This study, focusing on Alaska's North Slope, explores the influence of freshwater fluxes on water optical properties, vital for accurate satellite remote sensing interpretations. Our approach combined field measurements, existing data, and satellite remote sensing retrievals to identify biogeochemical gradients and their seasonal and interannual variations. A novel finding was the unique CDOM composition in Prudhoe Bay, characterized by a lower molecular …

Fine Characterization Of Leafing Phenology In The Brazilian Atlantic Forest By Optical And Microwave Remote Sensing, James B. Bell

Dissertations and Theses

Tropical forests provide important ecosystem functions in the global biosphere, but they remain among the most poorly understood elements of land surface models, especially with regard to their seasonal dynamics. For instance, in seasonally dry forests, the pattern of the annual green-up in their canopies closely follows annual patterns of rainfall. The same, however, does not occur in wet forest canopies which are dominated by evergreen trees. In the latter, water is not scarce enough to limit leaf photosynthetic function. Canopy leafing phenology in these forests is therefore poorly characterized by optical remote sensing methods which are not sensitive to …

Shallow Water Coral Distribution And Its Response To Climate Change, Amaury De Jesus

Dissertations and Theses

Shallow water corals are one of the main reef-building organisms that secrete carbonates as their skeletons, and therefore, are one of the major sinks of CO2 in the ocean. These reef builders are also very crucial to marine environments and human society. As the global energy demand continues rising, fossil fuel burning increases at a faster pace despite the increase in energy supply using clean and renewable energy. The increase of CO2 in the atmosphere has been shown to exacerbate global warming and may cause ocean acidification, threatening the habitat of shallow-water corals. Many recent observations show alarming signs of …

Interactions Of Bioactive Trace Metals In Shipboard Southern Ocean Incubation Experiments, Shannon M. Burns, Randelle M. Bundy, William Abbott, Zuzanna Abdala, Alexa R. Sterling, P. Dreux Chappell, Bethany D. Jenkins, Kristen N. Buck

OES Faculty Publications

In the Southern Ocean, it is well‐known that iron (Fe) limits phytoplankton growth. Yet, other trace metals can also affect phytoplankton physiology. This study investigated feedbacks between phytoplankton growth and dissolved Fe, manganese (Mn), cobalt (Co), nickel (Ni), copper (Cu), zinc (Zn), and cadmium (Cd) concentrations in Southern Ocean shipboard incubations. Three experiments were conducted in September–October 2016 near the West Antarctic Peninsula: Incubations 1 and 3 offshore in the Antarctic Circumpolar Current, and Incubation 2 inshore in Bransfield Strait. Additions of Fe and/or vitamin B₁₂ to inshore and offshore waters were employed and allowed assessment of metal (M) …

Authigenic Iron Is A Significant Component Of Oceanic Labile Particulate Iron Inventories, Laura E. Sofen, Olga A. Antipova, Kristen N. Buck, Salvatore Caprara, Lauren Chacho, Rodney J. Johnson, Gabriella Kim, Peter Morton, Daniel C. Ohnemus, Sara Rauschenberg, Peter N. Sedwick, Alessandro Tagliabue, Benjamin S. Twining

OES Faculty Publications

Particulate phases transport trace metals (TM) and thereby exert a major control on TM distribution in the ocean. Particulate TMs can be classified by their origin as lithogenic (crustal material), biogenic (cellular), or authigenic (formed in situ), but distinguishing these fractions analytically in field samples is a challenge often addressed using operational definitions and assumptions. These different phases require accurate characterization because they have distinct roles in the biogeochemical iron cycle. Particles collected from the upper 2,000 m of the northwest subtropical Atlantic Ocean over four seasonal cruises throughout 2019 were digested with a chemical leach to operationally distinguish labile …

Carbonate Chemistry And Carbon Sequestation Driven By Inorganic Carbon Outwelling From Mangroves And Saltmarshes, Gloria M. S. Reithmaier, Alex Cabral, Anirban Akhand, Matthew J. Bogard, Alberto V. Borges, Steven Bouillon, David J. Burdige, Mitchell Call, Nengwang Chen, Xiaogang Chen, Luiz C. Cotovicz Jr., Meagan J. Eagle, Erik Kristensen, Kevin D. Kroeger, Zeyang Lu, Damien T. Maher, J. Lucas Pérez-Lloréns, Raghab Ray, Pierre Taillardat, Joseph J. Tamborski, Rob C. Upstill-Goddard, Faming Wang, Zhaohui Aleck Wang, Kai Xiao, Yvonne Y.Y. Yau, Isaac R. Santos

OES Faculty Publications

Mangroves and saltmarshes are biogeochemical hotspots storing carbon in sediments and in the ocean following lateral carbon export (outwelling). Coastal seawater pH is modified by both uptake of anthropogenic carbon dioxide and natural biogeochemical processes, e.g., wetland inputs. Here, we investigate how mangroves and saltmarshes influence coastal carbonate chemistry and quantify the contribution of alkalinity and dissolved inorganic carbon (DIC) outwelling to blue carbon budgets. Observations from 45 mangroves and 16 saltmarshes worldwide revealed that >70% of intertidal wetlands export more DIC than alkalinity, potentially decreasing the pH of coastal waters. Porewater-derived DIC outwelling (81 ± 47 mmol m^{−2 …}

Spatiotemporal Dynamics And Biogeochemical Responses In A Tidally Restricted Moro Cojo Slough, Ryan Chiu

Master's Theses

Four years of observational data for Moro Cojo Slough (MCS), a Mediterranean climate estuary in central California, linked anthropogenic nutrient loading and hydrological modifications to a shift in net ecosystem metabolism (NEM) that differs from the characteristic net heterotrophic behavior of most estuarine systems. A lack of precipitation and limited flushing during the dry seasons, as evidenced from hypersaline waters, contribute to high ecosystem respiration rates that drove NEM to nearly balanced or net autotrophic. During the wet seasons, increased runoff and nutrient loading due to precipitation elevated primary production rates within MCS, characterizing the system as net autotrophic. Box …

Rapid Bacterial And Fungal Successional Dynamics In First Year After Chaparral Wildfire, M. Fabiola Pulido-Chavez, James W. J. Randolph, Cassandra A. Zalman, Loralee Larios, Peter M. Homyak, Sydney I. Glassman

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The rise in wildfire frequency and severity across the globe has increased interest in secondary succession. However, despite the role of soil microbial communities in controlling biogeochemical cycling and their role in the regeneration of post-fire vegetation, the lack of measurements immediately post-fire and at high temporal resolution has limited understanding of microbial secondary succession. To fill this knowledge gap, we sampled soils at 17, 25, 34, 67, 95, 131, 187, 286, and 376 days after a southern California wildfire in fire-adapted chaparral shrublands. We assessed bacterial and fungal biomass with qPCR of 16S and 18S and richness and composition …

Diversifying And Perennializing Plants In Agroecosystems Alters Retention Of New C And N From Crop Residues, Marshall D. Mcdaniel, Jeffrey A. Bird, Jennifer Pett-Ridge, Erika Marin-Spiotta, Tom M. Schmidt, A. Stuart Grandy

Faculty Publications

Managing soils to retain new plant inputs is key to moving toward a sustainable and regenerative agriculture. Management practices, like diversifying and perennializing agroecosystems, may affect the decomposer organisms that regulate how new residue is converted to persistent soil organic matter. Here we tested whether 12 years of diversifying/perennializing plants in agroecosystems through extended rotations or grassland restoration would decrease losses of new plant residue inputs and, thus, increase retention of carbon (C) and nitrogen (N) in soil. We tracked dual-labeled (13C and 15N), isotopically enriched wheat (Triticum aestivum) residue in situ for 2 years as it decomposed in three …

Larval Ecology Of Atlantic Bluefin Tuna (Thunnus Thynnus): New Insights From Otolith Microstructure, Biotic, And Abiotic Analyses From The Gulf Of Mexico And Mediterranean Sea, Estrella Malca

All HCAS Student Capstones, Theses, and Dissertations

Atlantic bluefin tuna (ABT), Thunnus thynnus, spawn in the Gulf of Mexico (GoM) and the Mediterranean Sea (MED). Spawning occurs within narrow temporal and environmental parameters. Efforts to characterize growth of ABT in wild conditions revealed a wide range of growth variability during the early life stages. This series of studies examined potential biotic and abiotic influences of larval growth from seven ABT cohorts, and identified several key drivers of growth for this commercially valuable species. A detailed investigation of larval dynamics using otolith microstructure was conducted as follows. First, companion growth curves and stable isotope analysis from the same …