Biogeochemistry Commons^™

The Phosphorus Puzzle: Why Metal Phosphites Could Be The Missing Piece, Eleanor Boyle, Thomas J. Leyden Iii

Symposium of Student Scholars

It is well understood that phosphorylation of organic molecules is a keystone mechanism toward developing early cell function. However, the source of phosphorous in prebiotic chemistry is under debate. Phosphate minerals were abundant on the early Earth, but they are highly insoluble. In comparison, metal phosphites are significantly more soluble. While they may not have been preserved in the geological record, there are several plausible pathways for their formation under prebiotic conditions. We hypothesize that metal phosphites were a major source of phosphorus. To test our hypothesis, we synthesized and characterized metal phosphites, containing the most abundant cations on the …

Spot1328 Meira Spit, Robert C. Mahon, Elizabeth J. Trower, Benjamin P. Smith, Tyler A. Lincoln, Juliana Olsen-Valdez, John S. Magyar, Cedric J. Hagen

2D Wave Spectral Data, South Arm, Great Salt Lake, Utah

Data in this folder are produced by a SoFarOcean Spotter wave buoy deployed along the south arm of the Great Salt Lake, near Antelope Island State Park from the period of July 13, 2021 through June 28, 2022, in relatively shallow water, approximately 1.6m.

IMPORTANT NOTE: Water depths for #1328 (Miera Spit) started at ~1.7 m, but dropped rapidly to 0.9 m on July 15, 2021 and dropped further to ~0.4 m on August 17, 2021. The timing of these rapid water depth changes matches the timing of buoy location changes when the anchor was dragged inshore by waves. When …

Strategies For Achieving Agriculture Carbon Peak And Carbon Neutrality In China Based On View Of Biogeochemical Cycle, Shiqi Yang, Xin Yan

Bulletin of Chinese Academy of Sciences (Chinese Version)

Biogeochemical cycle is the basic theory of matter (elements) flow among atmosphere, hydrosphere, biosphere and lithosphere, which provides important guidance to achieving the national goal of agriculture carbon peak (ACP) and agriculture carbon neutrality (ACN). As a basic industry, agriculture has large-scale temporal and spatial influence on the greenhouse effect, hence great importance should be attached to ACP and ACN in order to assist the overall strategy of achieving national carbon peak and neutrality. Based on the view of biogeochemical cycle and connotations of ACP and ACN, this article analyzes the paths to achieve ACP and ACN, and discusses the …

Dust Deposition To The Bermuda Region: A Comparison Of Estimates Using Seasonally-Resolved Measurements Of Aluminum In Water-Column, Aerosol, And Rain Samples, Tara Williams, Peter Sedwick, Bettina Sohst, Joe Resing, Kristen Buck, Salvatore Caprara, Rod Johnson, Dan Ohnemus, Ben Twining, Alessandro Tagliabue

College of Sciences Posters

Dust deposition is a major source of bioactive trace elements to the surface ocean, yet this flux remains difficult to constrain. Previously, time-averaged dust flux has been estimated using surface ocean dissolved aluminum (DAl) concentrations, assumed values for aerosol aluminum solubility (%Al_S), and the residence time of DAl in the surface mixed layer (SML). We apply this method to estimate dust deposition in the Bermuda Atlantic Time-series Study (BATS) region using water-column DAl data from cruises in 2019, which is compared with direct flux estimates from contemporaneous measurements of aluminum in aerosols and rain collected on Bermuda. Seasonal …

Interactions Of Bioactive Trace Metals In Shipboard Southern Ocean Incubation Experiments, Shannon M. Burns, Randelle M. Bundy, William Abbott, Zuzanna Abdala, Alexa R. Sterling, P. Dreux Chappell, Bethany D. Jenkins, Kristen N. Buck

OES Faculty Publications

In the Southern Ocean, it is well‐known that iron (Fe) limits phytoplankton growth. Yet, other trace metals can also affect phytoplankton physiology. This study investigated feedbacks between phytoplankton growth and dissolved Fe, manganese (Mn), cobalt (Co), nickel (Ni), copper (Cu), zinc (Zn), and cadmium (Cd) concentrations in Southern Ocean shipboard incubations. Three experiments were conducted in September–October 2016 near the West Antarctic Peninsula: Incubations 1 and 3 offshore in the Antarctic Circumpolar Current, and Incubation 2 inshore in Bransfield Strait. Additions of Fe and/or vitamin B₁₂ to inshore and offshore waters were employed and allowed assessment of metal (M) …

Rapid Bacterial And Fungal Successional Dynamics In First Year After Chaparral Wildfire, M. Fabiola Pulido-Chavez, James W. J. Randolph, Cassandra A. Zalman, Loralee Larios, Peter M. Homyak, Sydney I. Glassman

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The rise in wildfire frequency and severity across the globe has increased interest in secondary succession. However, despite the role of soil microbial communities in controlling biogeochemical cycling and their role in the regeneration of post-fire vegetation, the lack of measurements immediately post-fire and at high temporal resolution has limited understanding of microbial secondary succession. To fill this knowledge gap, we sampled soils at 17, 25, 34, 67, 95, 131, 187, 286, and 376 days after a southern California wildfire in fire-adapted chaparral shrublands. We assessed bacterial and fungal biomass with qPCR of 16S and 18S and richness and composition …

Carbon Dioxide Emissions From Deadwood In Forests Of The Northeastern United States, Zoe Read

Electronic Theses and Dissertations

As the climate changes, understanding the sources and sinks of greenhouse gases such as carbon dioxide (CO₂) is increasingly important. However, several components of the carbon cycle within forests remain poorly understood. For example, knowledge gaps exist in our understanding of CO₂ emissions from coarse woody material (CWM; logs and stumps), including how emissions change over time, how they are influenced by environmental variables, and how they compare to soil and ecosystem-level CO₂ emissions.

To fill these knowledge gaps, we examined CO₂ emissions from CWM at three sites. We sampled 18 red spruce (Picea …

The Binding Of The Micronutrient Transition Metals To The Alkylation Products Of Chemical Warfare Agent, Sulfur Mustard, And Thiols, Potentially Giving New Understanding To Physiological Effects Of Exposure And Increased Toxicity, Colin O'Donnell

Graduate Theses and Dissertations

Model compounds, 3,6,9-trithaiundecane-1,11-dicarboxylic acid (TTDPA), 2,5,8-trithianonane-1,9-dicarboxylic acid (TTDAA), and 1,11-diamide-3,6,9-trithiaundecane (TTDAce), closely related to the adducts formed by cysteine alkylation of the chemical weapon, sulfur mustard, were synthesized. It is shown that TTDPA forms complexes with key metal micronutrients: copper, nickel, cobalt, manganese, and zinc. Though the strength of binding to TTDPA varies, the complexes in many cases precipitate from solution. All metals produced a visible precipitate upon interaction with TTDPA under the conditions tested, however only Cu2+, Mn2+, and Zn2+ produced enough to be measured. The mass of formed precipitate seemed to peak at an equimolar ratio of TTDPA …

Using Xbeach To Describe The Performance Of An Intertidal Vegetation Shoreline Stabilization Treatment, Elizabeth Winter

Theses and Dissertations

The purpose of this project is to predict the hydrodynamic and morphodynamics of an engineered vegetation-only shoreline restoration project in Little Lagoon, Alabama under different storm and sea level rise scenarios. Little Lagoon is a shallow, single-inlet lagoon located in Baldwin County, Alabama that has been experiencing shoreline erosion for the past 28 years. A living shoreline using vegetation only (Spartina alterniflora) was implemented in the southwest corner of the lagoon, located within Bon Secour National Wildlife Refuge, to create habitat, improve water quality, and prevent future erosion. This research compares “with-project” and “without-project” hydrodynamics and morphodynamics using XBeach in …

The Nitrogen Dynamics Of Deer Cave, Sarawak, And The Role Of Bat Caves As Biogeochemical Sinks In Tropical Moist Forests., Joyce Lundberg, Donald A. Mcfarlane, Guy Van Rentergem

International Journal of Speleology

A better understanding of the role of bat caves as nitrogen sinks in tropical moist forest ecosystems can be expected to shed light on regional and spatial variability in nutrient recycling studies. We measured the nitrogen flux (in air and water) associated with a very large Chaerephon plicata bat colony in Deer Cave, Borneo, in the process generating a new, quantitative, estimate of the total bat population (774,828 ±48,320), and the first detailed modelling of an ammonia plume in a cave. Long-term storage of N does not occur in this wet cave. Our final budget numbers indicate that, of the …

Concentration Of Heavy Metals In Three Distinct Algae Families From Humboldt County, California, Kodiak E. Miller, Caleb J. Strait, Jacob I. Begorre, Brittney L. Mitchell, Claire P. Till

IdeaFest: Interdisciplinary Journal of Creative Works and Research from Cal Poly Humboldt

Anthropogenic impacts on marine environments can impact metal fluxes and concentrations available to marine species. Monitoring these impacts is necessary to better understand the interactions between the biotic and abiotic components of these ecosystems and mitigate the risk posed by harmful toxins introduced by human activities. Biomoniters, like macroscopic algae, are useful indicators that illuminate the bioaccumulation of toxins commonly introduced from anthropogenic activity. With this in mind, the concentrations of heavy metals zinc (Zn), nickel (Ni), and copper (Cu) were analyzed via the assessment of algae (Representatives from Ulva, Mastocarpus, Fucus) in two sites in Humboldt County: …

Manganese Bioavailability Drives Organic Matter Transformations Across Oxic-Anoxic Interfaces Via Biotic And Abiotic Pathways, Nathan A. Chin

Masters Theses

Soil organic matter decomposition is a critical process that affects nutrient cycling, CO₂ emissions, and carbon storage in terrestrial environments. Recent evidence suggests reactive manganese (Mn) phases, potent oxidants that depolymerize compounds like lignocellulose in soil organic matter, act as critical drivers of organic matter decomposition in soil and sediment environments. Furthermore, oxic-anoxic interfaces (OAIs) have been shown to be crucial hotspots for the formation of reactive Mn(III) species and associated organic matter degradation. However, the extent to which microbially mediated Mn(III) formation and subsequently Mn(III)-driven organic matter oxidation depends on Mn availability remains largely unknown. Additionally, the relative …

Evaluating The Impact Of Submarine Groundwater Discharge On Nutrients And Trace Elements In Coastal Systems: The Examples Of The Tuckean Swamp (Australia) And The Mississippi Sound (Usa), Amy Moody

Dissertations

Submarine groundwater discharge (SGD) is the advective flow of both fresh terrestrial groundwater and recirculating seawater through aquifer sediments, which is released into the coastal ocean. In this dissertation, I evaluated the impact of SGD on the distributions and input of trace metals and nutrients. In the Tuckean Swamp, an estuary in Australia dominated by coastal acid sulfate soils, I determined the impact of groundwater on Ba and U during the flood season, when the local aquifer is flushed out after a rapid increase in water table elevation. For Ba and U, groundwater contributed up to 18 and 66 % …

Nutrient Dynamics And Ecosystem Development Of Urban Forests, Gisselle A. Mejía

Dissertations, Theses, and Capstone Projects

Urban growth and expansion are a major component of global environmental change, with impacts on climate, air and water quality, biodiversity, and human well-being. Forests embedded in urban landscapes are critical in mitigating these impacts at local, regional, and continental scales. However, assessing urban forests is difficult because cities are heterogenous in physical, chemical, biological, and social dimensions. This heterogeneity has constrained how urban forests are defined, and therefore, how they are studied. The objective of this dissertation is to determine how these biophysical and social factors drive ecological processes in urban forests and will address three outstanding challenges in …

Exploring The Use Of Covellite As A Proxy For Corrosion Of Native Copper By Sulphur Reducing Bacteria, Manan K. Joshi

Undergraduate Student Research Internships Conference

We are analyzing the effect of sulphate reducing bacteria on native copper, and using that evidence to further support the initiative of having a deep geological repository to store nuclear material. Sulphate reducing bacteria are a concern for the deep geological repository as they cause the corrosion of regular copper. However native copper has gone billions of years without corrosion, which could either mean that it had not been exposed to sulphate reducing bacteria over the billions of years, or native copper is able to withstand corrosion despite the contact of sulphate reducing bacteria. We can find out by trying …

The Paleoecology Of High-Elevation Bison In The Greater Yellowstone Ecosystem And Implications For Modern Bison Conservation, Darian Bouvier

Electronic Theses and Dissertations

The national mammal of the United States, the American Bison (Bison bison) was once nearly extinct. Populations have recovered to the degree that thousands roam the Great Plains today. Due to their large numbers and body size, this species has an oversized impact on the ecological communities where it lives and is considered a keystone herbivore in modern North American grasslands. This study explores the detailed, seasonally resolved, paleoecology of seven bison from the Greater Yellowstone Ecosystem during the Late Holocene through stable isotope analyses and species niche modeling. Isotopic analyses of δ¹³C, δ¹⁵N, …

Manganese Geochemistry And Plant Availability In Response To Agricultural Practices, Ashleigh R. Montgomery

Masters Theses

Manganese (Mn) is an essential micronutrient for all organisms. In soils, Mn forms determine availability to plants. Most Mn research has been conducted in forest ecosystems and Mn cycling in agricultural systems is understudied. Therefore, the objective of the experiment is to understand the effect of different agricultural management strategies on Mn cycling and plant availability. First, a greenhouse experiment was conducted to determine the effect of different application rates of two Mn fertilizers (MnSO₄ and MnEDTA) on soil geochemical properties and growth of corn (Zea mays) and soybean (Glycine max). The fertilizers were applied to …

The Characterization Of Dynamic Soil Properties And Their Relation To Soil Organic Carbon In East Tennessee Soils, Shannon Marissa Newell

Masters Theses

Quantifying how dynamic soil properties (DSPs) are affected by different management regimes is essential for understanding how these vital resources can be better managed. The Dewey soil series is a critical soil series in East Tennessee. For this study, the University of Tennessee, Knoxville (UTK) worked alongside the National Cooperative Soil Survey (NCSS) in an effort to better understand the dynamics of the Dewey soil series through a wide range of DSP data. To accomplish this, Dewey soil was collected from five sites which are considered representative of five management regimes: well-managed cropland (WMC), poorly-managed cropland (PMC), well-managed pasture (WMP), …

Whole Farm Net Zero: Approaches To Quantification Of Climate Regulation Ecosystem Services At The Whole Farm Scale. Vermont Payment For Ecosystem Services Technical Report #7, Christopher Bonasia, Lindsey Ruhl, Benjamin Timothy Dube, Alissa C. White, Heather M. Darby

UVM Extension Faculty Publications

In this report, approaches to the quantification of climate mitigation ecosystem services at the whole farm scale are reviewed and summarized for easy comparison. Eight quantification tools, and three case studies demonstrating possible tool applications, are summarized to fulfill the requirements of the Technical Services Contract—Task 7. Information from a combination of literature review and expert interviews served to document the inputs, outputs, strengths, weaknesses, opportunities, and threats for each quantification tool. This research was conducted in service to the Vermont Soil Health and Payment for Ecosystem Services (PES) Working Group (VT PES working group). It is our hope that …

Understanding Biogeochemical And Physical Controls On Methane Air-Sea Exchange Fluxes In The Pacific Ocean, Sarah Raney

Master's Theses

Methane and trace element samples were collected on GEOTRACES GP15 Pacific Meridional Transect (PMT) cruise conducted between the Aleutian Islands (57 °N) and Tahiti (20 °S) from September to November 2018. Uncertainty in methane air-sea exchange fluxes was determined using a propagation of errors approach. Fluxes ranged from -0.88 to 4.9 µmol CH₄ m^-2 d^-1. Average CH₄ flux along the Alaskan margin was 2.2 ± 2.9 µmol CH₄ m^-2 d^-1. Methane fluxes decreased moving southward and increased to their open ocean maximum around 20 °N before declining in equatorial waters. Near …