Biogeochemistry Commons^™

A Comprehensive Evaluation Of C25 Highly Branched Isoprenoid Alkenes Of Marine Diatoms As Proxies For Sea Ice Extent In The Arctic Ocean, Tetiana Muniak

OES Theses and Dissertations

Sea Ice extent is one of the major factors regulating carbon cycling and ecosystem function in the modern Arctic Ocean. It is an essential component of climate models and is crucial for the evaluation of various oceanographic processes that influence a particular region. Yet it is also one of the most difficult attributes of the ocean with respect to our ability for its accurate reconstruction from paleo records. The lack of the detailed records prior to satellite information has encouraged the development of new proxy records for the reconstruction of past

sea ice conditions. In recent years, a new monounsaturated …

Implications Of Climate Change For Cyanobacteria Over The Western Florida Shelf In The Gulf Of Mexico, Ivy Mara Ozmon

OES Theses and Dissertations

Concentrations of atmospheric CO₂ are expected to double by year 2100 as a result of anthropogenic activities. Under elevated CO₂ conditions, cyanobacteria may reallocate energy from active accumulation and transport of dissolved inorganic carbon (C) required for photosynthesis to other growth processes. Stimulation of cyanobacterial production on the Western Florida Shelf in the Gulf of Mexico (GOM) could lead to improved nutritional status for the toxic, mixotrophic dinoflagellate Karenia brevis that utilizes newly fixed N₂ from co-occurring diazotrophic cyanobacteria and consumes unicellular cyanobacteria via grazing for growth. Culture studies performed by other researchers on the climate induced …

Carbon Sequestration In Tidal Salt Marshes And Mangrove Ecosystems, Carlos Eduardo Quintana-Alcantara

Master's Projects and Capstones

Wetlands are dynamic systems that provide support to vital environmental functions and services. Wetlands take part in the global carbon cycle by holding organic carbon in biomass, soils and sediments. In recent years, the wetland carbon sequestration capacity has been researched worldwide due to the increase of the concentrations of greenhouse gasses implicated in global warming and climate change. Although coastal wetlands release the greenhouse gasses carbon dioxide, methane and nitrous oxide, these ecosystems maintain high performance in offsetting significant amounts of atmospheric carbon. This paper investigated the carbon sequestration capacity of coastal wetland ecosystems summarizing the environmental conditions and …

Water Water Everywhere: Analyzing Long Island's Water Issues And Finding Solutions For A Sustainable Future, Anthony T. Becker

2014 Student Theses

Over three million people call Long Island their home. With access to beautiful landscapes, world-renowned beaches, and proximity to New York City, it is no wonder that so many proudly call this geographic stretch of glacial till their home. However, throughout the years our actions do not necessarily reflect this affection we have to our home. Years of sprawl and human infestation across the island have resulted in widespread environmental degradation. Specifically, the water we drink and the beaches we enjoy have become endangered. I plan on studying the urban ecology of how intensified population growth led to the eutrophication …

Estimating Nitrogen Fixation Rates, Importance, And Short-Term Efficiency In Small, Temperate Reservoirs Using Delta15n Techniques, Bryant Christopher Baker

Graduate Theses and Dissertations

Nitrogen (N2) fixation can give certain species of cyanobacteria a competitive advantage in lake and reservoir phytoplankton. These species of cyanobacteria, along with others that cannot fix N2, can form toxic compounds that impair water quality when present in high concentrations. N2 fixation rates may be substantial in small (< 1.0 km2), temperate reservoirs since these systems experience thermal stratification and often nitrogen (N) limitation throughout a substantial proportion of the year. However, the effects of N2 fixation on N cycling, alleviation of short-term N limitation, and water quality are not well-understood. A mesocosm experiment and ecosystem-scale observational study were conducted to 1) determine the efficiency of N2 fixation under varying N relative to phosphorus (P) supply, 2) examine the effects of N2 fixation on autotrophic biomass accumulation and microcystin production, and 3) measure N2 fixation rates and importance to autotrophic N demand and zooplankton N assimilation. Results of the mesocosm experiment indicated that N2 fixation was increased at low N:P supply under high P. However, N2 fixation was inefficient at alleviating N limitation when fixed N was the primary source of N. Additionally, microcystin production occurred only at high N:P supply when N2 fixation was low, indicating that reducing external N inputs may have a positive effect on water quality. Results of whole-reservoir determination of N2 fixation using seston δ15N natural abundances indicated that N2 fixation rates throughout the warm season were substantial and influenced by water temperature. Annual N2 fixation rates ranged from 2.2 - 6.6 g N m-2 yr-1, and contributed up to 19% of the annual autotrophic N demand. Zooplankton were assimilating fixed N in most of the study reservoirs, representing a possible mechanism of ecosystem fixed N retention. Collectively, these results suggest that N2 fixation plays a substantial role in N cycling in small, temperate reservoirs, but likely cannot alleviate short-term N limitation.

Methane Emissions And Ammonia Volatilization From Drill-Seeded, Delayed-Flood Rice On A Silt-Loam Soil In Arkansas, Christopher Wade Rogers

Graduate Theses and Dissertations

The Environmental Protection Agency (EPA) currently uses a single methane (CH4) emissions factor of 160 kg CH4-C ha-1 for a primary rice (Oryza sativa L.) crop. The emissions factor is based on studies that do not adequately represent current management practices in Arkansas. Another concern is pre-flood fertilizer nitrogen (N) management, as the common N source, urea, is prone to loss via ammonia (NH3) volatilization. Thus, the objective of this research was to investigate trace gas emissions from rice on a silt-loam soil, including CH4 emissions as influenced by nitrogen (N) fertilization (i.e., optimal N and no N) in 2011, …

Molecular Analyses Of Microbial Abundance And Diversity In The Water Column Of Anchialine Caves In Mallorca, Spain, Damian Menning, Liana M. Boop, Elaina D. Graham, James R. Garey

International Journal of Speleology

Water column samples from the island of Mallorca, Spain were collected from one site in Cova des Pas de Vallgornera (Vallgornera) and three sites (Llac Martel, Llac Negre, and Llac de les Delícies) in Coves del Drac (Drac). Vallgornera is located on the southern coast of Mallorca approximately 57 km southwest of Coves del Drac. Drac is Europe's most visited tourist cave, whereas Vallgornera is closed to the public. Water samples were analyzed for water chemistry using spectrophotometric methods, by quantitative PCR for estimated total abundance of microbial communities, and by length heterogeneity PCR for species richness and relative species …

Searching For Biogeochemical Hot Spots In Three Dimensions: Soil C And N Cycling In Hydropedologic Settings In A Northern Hardwood Forest, Jennifer L. Morse, S F. Werner, Cody P. Gillin, Christine L. Goodale, Scott W. Bailey, Kevin J. Mcguire, Peter M. Groffman

Environmental Science and Management Faculty Publications and Presentations

Understanding and predicting the extent, location, and function of biogeochemical hot spots at the watershed scale is a frontier in environmental science. We applied a hydropedologic approach to identify (1) biogeochemical differences among morphologically distinct hydropedologic settings and (2) hot spots of microbial carbon (C) and nitrogen (N) cycling activity in a northern hardwood forest in Hubbard Brook Experimental Forest, New Hampshire, USA. We assessed variables related to C and N cycling in spodic hydropedologic settings (typical podzols, bimodal podzols, and Bh podzols) and groundwater seeps during August 2010. We found that soil horizons (Oi/Oe, Oa/A, and B) differed significantly …

Influence Of Diet On Element Incorporation In The Shells Of Two Bivalve Molluscs: Argopecten Irradians Concentricus And Mercenaria Mercenaria, William Noland Elsaesser

USF Tampa Graduate Theses and Dissertations

Recently, biogenic carbonates have received much attention as potential proxies of environmental change; however, a major pathway of elemental incorporation is often overlooked when making interpretations or designing experiments. This research experimentally examines the influence of diet on elemental composition in juvenile shells of the bay scallop, Argopecten irradians concentricus, and the northern quahog, Mercenaria mercenaria.

Exploratory trials were conducted using Argopecten irradians concentricus juveniles fed different algal diets: Isochrysis, Chaetoceros, Pavlova, Tetraselmis, or a mix of all four in a 2:1:2:2 ratio. No differences between the left and right valves were revealed, thus, subsequent analysis of the dietary influence …

Mechanisms Of Soil Carbon Accrual And Storage In Bioenergy Cropping Systems, Lisa K. Tiemann, A. Stuart Grandy

Faculty Publications

Annual row cropping systems converted to perennial bioenergy crops tend to accrue soil C, likely a function of increased root production and decreased frequency of tillage; however, very little is known about the mechanisms governing the accrual and stability of this additional soil C. To address this uncertainty, we assessed the formation and stability of aggregates and soil organic C (SOC) pools under switchgrass, giant miscanthus, a native perennial grass mix and continuous corn treatments in Michigan and Wisconsin soils differing in both texture and mineralogy. We isolated different aggregate size fractions, >2 mm, 0.5–2 mm, and <0.5 mm, using a procedure intended to minimize alterations to aggregate biological and chemical properties. We determined SOC, permanganate oxidizable C (POXC), and microbial activities (i.e. enzyme activities and soil respiration rates) associated with these aggregates. Soil type strongly influenced the trajectory of aggregate formation and stabilization with differences between sites in mean aggregate size, stability, SOC and microbial activity under perennial vs. corn cropping systems. At the Michigan site, soil microbial activities were highest in the >2 mm aggregates, …

Quantifying The Impact Of Atmospheric Deposition On The Biogeochemistry Of Fe And Al In The Upper Ocean: A Decade Of Collaboration With The Us Clivar-Co2 Repeat Hydrography Program, Maxime Grand, Clifton Buck, William Landing, Christopher Measures, Mariko Hatta, William Hiscock, Matthew Brown, Joseph Resing

Faculty Publications

The aerosol deposition of continental material and its partial dissolution in the surface ocean exerts an important control on the distribution of iron and other potentially limiting trace metal (TM) micronutrients in the open ocean. This dust deposition has implications for the regulation of global climate through the coupling of biolimiting TM cycles, marine productivity, and the global carbon cycle. Thus, it is important to determine the locations of dust deposition in the open ocean and to quantify the magnitude and subsequent dissolution of the dust. At present, there are too few dust deposition estimates and solubility measurements in the …

Geotraces: Changing The Way We Explore Ocean Chemistry, Robert F. Anderson, Edward Mawji, Gregory A. Cutter, Christopher I. Measures, Catherine Jeandel

OES Faculty Publications

GEOTRACES is an international study of the marine biogeochemical cycles of trace elements and their isotopes (TEIs), designed by marine geochemists to accelerate TEI research under a global program. Combining ocean sections, process studies, data synthesis, and modeling, GEOTRACES will identify and quantify the processes that supply TEIs at ocean boundaries as well as the physical and biological processes that redistribute TEIs within and between ocean basins. Constraining processes that remove TEIs from the ocean will enable complete mass budgets to be generated. Anticipated beneficiaries of GEOTRACES products include scientists studying the sustained health of marine ecosystems and their sensitivity …

Effect Of Carex Rostrata On Seasonal And Interannual Variability In Peatland Methane Emissions, Genevieve L. Noyce, Ruth Varner, Jill L. Bubier, Steve Frolking

Earth Sciences

Peatlands are a large natural source of atmospheric methane (CH₄), and the sedge Carex rostrata plays a critical role in the production, oxidation, and transport of CH₄ in these systems. This 4 year clipping experiment examined the changes in CH₄ emissions from a temperate peatland after removing all aboveground C. rostrata biomass. Methane fluxes, dissolved CH₄, and environmental variables were measured during spring, summer, and fall from 2008 to 2011. Clipping and removing the C. rostrata leaves and stems caused an immediate decrease in CH₄ emissions that persisted over 4 years of this …

A Review Of The Hyporheic Zone, Stream Restoration, And Means To Enhance Denitrification, Leanne Merill, David J. Tonjes

Technology & Society Faculty Publications

The hyporheic zone is the subsurface area below and adjacent to a stream where groundwater mixes with stream water, through vertical, lateral, and longitudinal flows. The hyporheic zone connects the stream to uplands and other terrestrial environments. It is a zone of distinct faunal communities, high biological diversity and ecological complexity, and is the site of chemical processing and transformations of ground- and stream waters. The hyporheic zone is important to the overall ecosystem ecology of the stream, and it can influence stream water chemistry. Flows, reactions, and biota in the hyporheic zone are heterogeneous and patchy, making it difficult …

Carbon And Nitrogen Isotope Analysis Of Archaeological Faunal Material From Dutchess Quarry Caves, Ny, Jessica Zuhlke

Legacy Theses & Dissertations (2009 - 2024)

The purpose of this study was to do an isotopic analysis to determine the carbon and nitrogen isotope concentrations of archaeological faunal material found in the Dutchess Quarry Caves in Orange County, NY. These isotope values were then used to compare the taxa from which the samples were taken to determine if and how trophic relationships were formed. The main focus of this comparison spotlighted a sample from a human femur; to establish the human's position trophically with the other large and small mammal samples collected. The human had been previously radiocarbon dated to have lived between 2877 and 3180 …

Direct Stratospheric Injection Of Biomass Burning Emissions: A Case Study Of The 2009 Australian Bushfires Using The Nasa Giss Modele2 Composition-Climate Model, Robert Field, Mike From, Apostolos Voulgarakis, Drew Shindell, Mike Flannigan, Peter Bernath

Chemistry & Biochemistry Faculty Publications

Direct stratospheric injection (DSI) of forest fire smoke represents a direct biogeochemical link between the land surface and stratosphere. DSI events occur regularly in the northern and southern extratropics, and have been observed across a wide range of measurements, but their fate and effects are not well understood.

DSIs result from explosive, short-lived fires, and their plumes stand out from the background concentrations immediately. This makes it easier to associate detected DSIs to individual fires and their estimated emissions. Because the emissions pulses are brief, chemical decay can be more clearly assessed, and because the emissions pulses are so large, …

A Coupled Geochemical And Biogeochemical Approach To Characterize The Bioreactivity Of Dissolved Organic Matter From A Headwater Stream, Rachel L. Sleighter, Rose M. Cory, Louis A. Kaplan, Hussain A.N. Abdulla, Patrick G. Hatcher

Chemistry & Biochemistry Faculty Publications

The bioreactivity or susceptibility of dissolved organic matter (DOM) to microbial degradation in streams and rivers is of critical importance to global change studies, but a comprehensive understanding of DOM bioreactivity has been elusive due, in part, to the stunningly diverse assemblages of organic molecules within DOM. We approach this problem by employing a range of techniques to characterize DOM as it flows through biofilm reactors: dissolved organic carbon (DOC) concentrations, excitation emission matrix spectroscopy (EEMs), and ultrahigh resolution mass spectrometry. The EEMs and mass spectral data were analyzed using a combination of multivariate statistical approaches. We found that 45% …

Compositions And Constituents Of Freshwater Dissolved Organic Matter Isolated By Reverse Osmosis, Yulong Zhang, Wen Huang, Jingdong Mao

Chemistry & Biochemistry Faculty Publications

Dissolved organic matter (DOM) from riverine and lacustrine water was isolated using a reverse osmosis (RO) system. Solid-state ¹³C nuclear magnetic resonance (¹³C NMR) was used to quantitatively evaluate the compositions and constituents of DOM, which are compared with previous investigations on marine DOM. Results indicated that concentration factor (CF) was a key metric controlling yield and sorption of DOM on the RO system. The sorption was likely non-selective, based on the ¹³C NMR and δ¹³C analyses. Carbohydrates and lipids accounted for 25.0–41.5% and 30.2–46.3% of the identifiable DOM, followed by proteins (18.2–19.8%) and …

Wavelength And Temperature-Dependent Apparent Quantum Yields For Photochemical Formation Of Hydrogen Peroxide In Seawater, David J. Kieber, Gary W. Miller, Patrick J. Neale, Kenneth Mopper

Chemistry & Biochemistry Faculty Publications

Wavelength and temperature-dependent apparent quantum yields (AQYs) were determined for the photochemical production of hydrogen peroxide using seawater obtained from coastal and oligotrophic stations in Antarctica, the Pacific Ocean at Station ALOHA, the Gulf of Mexico, and at several sites along the East Coast of the United States. For all samples, AQYs decreased exponentially with increasing wavelength at 25 °C, ranging from 4.6 × 10−4 to 10.4 × 10−4 at 290 nm to 0.17 × 10−4 to 0.97 × 10−4 at 400 nm. AQYs for different seawater samples were remarkably similar irrespective of expected differences in the composition and concentrations …

Estimating Hydroxyl Radical Photochemical Formation Rates In Natural Waters During Long-Term Laboratory Irradiation Experiments, Luni Sun, Hongmei Chen, Hussain A. Abdulla, Kenneth Mopper

Chemistry & Biochemistry Faculty Publications

In this study it was observed that, during long-term irradiations (>1 day) of natural waters, the methods for measuring hydroxyl radical (˙OH) formation rates based upon sequentially determined cumulative concentrations of photoproducts from probes significantly underestimate actual ˙OH formation rates. Performing a correction using the photodegradation rates of the probe products improves the ˙OH estimation for short term irradiations (<1 day), but not long term irradiations. Only the ‘instantaneous’ formation rates, which were obtained by adding probes to aliquots at each time point and irradiating these sub-samples for a short time (≤2 h), were found appropriate for accurately estimating ˙OH photochemical formation rates during long-term laboratory irradiation experiments. Our results also showed that in iron- and dissolved organic matter (DOM)-rich water samples, ˙OH appears to be mainly produced from the Fenton reaction initially, but subsequently from other sources possibly from DOM photoreactions. Pathways of ˙OH formation in long-term irradiations in relation to H2O2 and iron concentrations are discussed.