Biogeochemistry Commons^™

Weathering In Iowa: Not What You May Think, Alexa Sedlacek

UNIversitas: Journal of Research, Scholarship, and Creative Activity

When I look at the limestone bedrock of Iowa, as I did just the other day with my daughter (figure 2—[credit: Aaron Spurr, Quarry October 2, 2016]), I see long-term carbon storage. I do not mean a place to sequester modern atmospheric CO2 into the subsurface. Rather, limestones in Iowa and around the world represent carbon that was removed from the atmosphere through geologic processes and stored in these carbonate rocks. Carbon storage in rocks such as limestone and fossil fuels are responsible for the large scale changes in atmospheric CO2 concentrations throughout Earth’s history.

Nutrient Contamination From Non-Point Sources: Dissolved Phosphate In Surface And Subsurface Waters At Eku Meadowbrook Farm, Madison County, Kentucky, Hunter R. Evans, Reid E. Buskirk, Walter S. Borowski, Jonathan M. Malzone

EKU Faculty and Staff Scholarship

Farms are non-point sources for nutrient contaminants that drain into watersheds and contribute to eutrophication and other environmental problems. Eastern Kentucky University’s Meadowbrook Farm raises both crops and livestock, causing dissolved phosphorus in the form of orthophosphate (PO₄^3-) from fertilizer and animal manure to enter surface and subsurface waters, eventually flowing into Muddy Creek, a tributary of the Kentucky River.

We sampled surface water, springs, and water from French drains that emanate from the farm, and also sampled Muddy Creek waters from May through August 2016. Typically, 1 to 2 days after sampling, we colorimetrically measured dissolved …

Nutrient Contamination From Non-Point Sources: Dissolved Nitrate And Ammonium In Surface And Subsurface Waters At Eku Meadowbrook Farm, Madison County, Kentucky, Reid E. Buskirk, Hunter R. Evans, Walter S. Borowski, Jonathan M. Malzone

EKU Faculty and Staff Scholarship

Agricultural activities often contaminate watersheds with excess nutrients leading to poor water quality and eutrophication. We assayed dissolved nutrient levels in surface and subsurface waters of Eastern Kentucky University’s Meadowbrook Farm in order to assess levels of dissolved nutrients leaving its farmland and draining into the Muddy Creek watershed. The Farm raises both crops and livestock so that nutrient sources include fertilizer and manure. We sampled springs, runoff, and subsurface pipe drainage as well as Muddy Creek on six days from May to August 2016 under a variety of weather conditions. Using established, standard colorimetric methods, we measured nitrate (NO …

The Fate Of Carbon In Sediments Of The Xingu And Tapajós Clearwater Rivers, Eastern Amazon, Dailson J. Bertassoli Jr., André O. Sawakuchi, Henrique O. Sawakuchi, Fabiano N. Pupim, Gelvam A. Hartmann, Michael M. Mcglue, Cristiano M. Chiessi, Matthias Zabel, Enno Schefuß, Tatiana S. Pereira, Rudney A. Santos, Samantha B. Faustino, Paulo E. Oliveira, Denise C. Bicudo

Earth and Environmental Sciences Faculty Publications

The Xingu and Tapajós rivers in the eastern Amazon are the largest clearwater systems of the Amazon basin. Both rivers have “fluvial rias” (i.e., lake-like channels) in their downstream reaches as they are naturally impounded by the Amazon mainstem. Fluvial rias are widespread in the Amazon landscape and most of the sedimentary load from the major clearwater and blackwater rivers is deposited in these channels. So far, little is known about the role of Amazon rias as a trap and reactor for organic sediments. In this study, we used organic and inorganic geochemistry, magnetic susceptibility, diatom, and pollen analyses in …

Multiple Metabolisms Constrain The Anaerobic Nitrite Budget In The Eastern Tropical South Pacific, Andrew R. Babbin, Brian D. Peters, Calvin W. Mordy, Brittany Widner, Karen L. Casciotti, Bess B. Ward

OES Faculty Publications

The Eastern Tropical South Pacific is one of the three major oxygen deficient zones (ODZs) in the global ocean and is responsible for approximately one third of marine water column nitrogen loss. It is the best studied of the ODZs and, like the others, features a broad nitrite maximum across the low oxygen layer. How the microbial processes that produce and consume nitrite in anoxic waters interact to sustain this feature is unknown. Here we used ¹⁵N-tracer experiments to disentangle five of the biologically mediated processes that control the nitrite pool, including a high-resolution profile of nitrogen loss rates. …

Cover Crop Root Contributions To Soil Carbon In A No-Till Corn Bioenergy Cropping System, Emily E. Austin, Kyle Wickings, Marshall D. Mcdaniel, G. Philip Robertson, A. Stuart Grandy

Faculty Publications

Crop residues are potential biofuel feedstocks, but residue removal may reduce soil carbon (C). The inclusion of a cover crop in a corn bioenergy system could provide additional biomass, mitigating the negative effects of residue removal by adding to stable soil C pools. In a no-till continuous corn bioenergy system in the northern US Corn Belt, we used 13CO2 pulse labeling to trace plant C from a winter rye (Secale cereale) cover crop into different soil C pools for 2 years following rye cover crop termination. Corn stover left as residue (30% of total stover) contributed 66, corn roots 57, …

Applying Population And Community Ecology Theory To Advance Understanding Of Belowground Biogeochemistry, Robert W. Buchkowski, Mark A. Bradford, A. Stuart Grandy, Oswald J. Schmitz, William R. Wieder

Faculty Publications

Approaches to quantifying and predicting soil biogeochemical cycles mostly consider microbial biomass and community composition as products of the abiotic environment. Current numerical approaches then primarily emphasise the importance of microbe–environment interactions and physiology as controls on biogeochemical cycles. Decidedly less attention has been paid to understanding control exerted by community dynamics and biotic interactions. Yet a rich literature of theoretical and empirical contributions highlights the importance of considering how variation in microbial population ecology, especially biotic interactions, is related to variation in key biogeochemical processes like soil carbon formation. We demonstrate how a population and community ecology perspective can …

Reconciling Opposing Soil Processes In Row-Crop Agroecosystems Via Soil Functional Zone Management, Alwyn Williams, Adam S. Davis, Andrea Jilling, A. Stuart Grandy, Roger T. Koide, David A. Mortensen, Richard G. Smith, Sieglinde S. Snapp, Kurt A. Spokas, Anthony C. Yannarell, Nicholas R. Jordan

Faculty Publications

Sustaining soil productivity in agricultural systems presents a fundamental agroecological challenge: nutrient provisioning depends upon aggregate turnover and microbial decomposition of organic matter (SOM); yet to prevent soil depletion these processes must be balanced by those that restore nutrients and SOM (soil building processes). These nutrient provisioning and soil building processes are inherently in conflict; management practices that create spatial separation between them may enable each to occur effectively within a single growing season, thereby supporting high crop yield while avoiding soil depletion. Soil functional zone management (SFZM), an understudied but increasingly adopted strategy for annual row-crop production, may help …

Effects Of Silvopasture Establishment On Aqueous And Gaseous Soil N Losses At The University Of New Hampshire Organic Dairy Research Farm, Kathryn Ann Slebodnik

Honors Theses and Capstones

The expansion of local agriculture in the New England region is putting increased pressure on farmers to expand their arable land base. While clear-cutting is a traditional method of converting forested land to agriculture, it is known for having adverse ecological impacts. To minimize these impacts, farmers can create a silvopasture which incorporates a portion of the original forest canopy into pastures or crop fields. This study evaluates the impact of land-use changes for agriculture on soil nitrogen (N) retention. In particular, this study investigates the differences in soil N turnover, gaseous loss, and aqueous loss among an established forest, …

Analysis Of Microbial Diversity In Disturbed Soil, Tyler G. Sanda

Williams Honors College, Honors Research Projects

This paper uses the composition and abundance of microbial species to analyze soil recovery in disturbed land. Surface mining disturbs ecological communities throughout the world. As organizations seek to reclaim these disturbed lands, a proper analysis of recovery is needed. In previous studies, recovery of disturbed land was limited to surface examinations, which do not characterize the possible unseen devastating effects of the subsoil. Soil microorganisms are extremely sensitive to environmental changes such as strip mining. It is proposed that these microorganisms may serve as better indicators of recovery post disturbance. Our analysis indicates microbial recovery, however it may not …

Structural Basis Of Membrane Protein Scaffolding And Signaling In Human Disease, Joshua Holcomb

Wayne State University Dissertations

Protein structural elucidation by means of X-ray crystallography is a powerful approach for both insight into a proteins biophysical properties and function. To date X-ray crystallography remains the gold standard in high resolution structural determination and serves as the basis for rational drug design for the purpose of combating a number of human diseases. Such an approach also allows for the exploitation of how various proteins interact with their substrates providing a molecular basis for their physiological function. In this dissertation, using X-ray crystallographic analysis along with other biophysical characterization methods, we seek to understand the mechanistic foundation for which …

Rock Magnetic Investigation Of The Michigan Basin Soils And Sediments Overlying The Oil-Bearing Silurian Pinnacle Reefs, Jake Tresnak

Dissertations, Master's Theses and Master's Reports

A relationship between the hydrocarbon migration and magnetic properties of near-surface sediments was investigated from several hundreds of samples collected over the hydrocarbon-bearing Silurian pinnacle reef belt of the Michigan Basin. The collected samples were investigated using several rock magnetic methods and optical microscopy. The investigation has not revealed a straightforward relationship between the magnetic susceptibility and hydrocarbon reservoirs within the reef belt; both anomalously high and low susceptibility values were observed. The elevated values are associated with newly formed magnetite in the form of spheroidal grains produced by hydrocarbon-related diagenesis while the extremely low susceptibilities may reflect dissolution of …

Marsh-Exported Dissolved Organic Matter Fate In Estuaries, Laura Ann Logozzo

Dissertations and Theses

Dissolved organic matter (DOM) is a significant driver of estuarine productivity and nutrient cycling. The colored component of DOM, chromophoric dissolved organic matter (CDOM), impacts coastal optical properties, ocean color, and light attenuation. While marshes are largely considered sinks for carbon due to their high productivity and low soil carbon degradation rates, laterally they are sources of carbon as optically and chemically distinct DOM to surrounding aquatic ecosystems; these inputs are often essential in sustaining a net heterotrophic system. However, the photoreactivity and bioavailability of marsh-exported DOM is largely uncategorized, thus making it difficult to quantify its impacts on estuarine …

Temporal Variability Of Fluorescent Dissolved Organic Matter At A Brackish, Tidal Marsh-Estuary Interface, Alana B. Menendez

Dissertations and Theses

Marshes are both terrestrial and aqueous, sitting as an intermediate between land and water. Studies over constrained numbers of tidal cycles have demonstrated that these marshes are net exporters of dissolved organic carbon (DOC) to adjoining estuaries, however, there is need for continuous monitoring to better understand the temporal variability of this flux: tidally, seasonally, and during episodic rain events. Through use of a YSI EXO2 sonde, an in situ optical sensor at the interface of the brackish, tidal Kirkpatrick Marsh and Rhode River sub-estuary in Edgewater, Maryland (located on the northwestern shore of the Chesapeake Bay), we were able …

Unraveling The Fingerprints Of Nox Using Stable Isotopes: Implications For Nox Source Partitioning And Oxidation Chemistry, Wendell William Walters

Open Access Dissertations

The nitrogen (N) and oxygen (O) stable isotope composition (δ15N & δ18O) of nitrogen oxides (NOx )may be a useful tool for constraining NOx emission sources as well as for understanding the atmospheric oxidation pathways responsible for its removal if various NOx sources and sink processes exhibit characteristic isotopic compositions (“fingerprints”). However, this requires (1) an accurate and complete inventory of δ15N(NOx) values from major emission sources, (2) an assessment of the kinetic and equilibrium isotope effects that can impact δ15N and δ18O values of NOx, (3) and test these assumptions by conducting accurate in situ δ15N and δ18O measurements …

Examining Denitrification In Agricultural Ditch Sediments Vegetated With Rice Cutgrass (Leersia Oryzoides): Modeling Seasonal Variation Across Increasing Levels Of Nitrate Loading And Model Application To Pre-Existing Datasets, Shannon Lee Speir

Graduate Theses and Dissertations

Nitrogen (N) derived from fertilizer application in agricultural systems may contribute to significant environmental impacts, including eutrophication of fresh and coastal waters. Rice cutgrass (Leersia oryzoides) can significantly enhance denitrification potential in agricultural ditch sediments, but relationships with known drivers are not well understood. To address this, I examined effects of nitrate (NO3-) availability on dinitrogen gas (N2) and NO3- fluxes seasonally in Chapter 2. Denitrification rates were measured as N2 flux from intact vegetated sediment cores using Membrane Inlet Mass Spectrometry (MIMS). Michaelis-Menten models were developed from observations to mathematically describe N2 fluxes across the spring, summer, and fall …

Direct Evidence For Microbial-Derived Soil Organic Matter Formation And Its Ecophysiological Controls, Cynthia M. Kallenbach, Serita D. Frey, A. Stuart Grandy

Faculty Publications

Soil organic matter (SOM) and the carbon and nutrients therein drive fundamental submicron- to global-scale biogeochemical processes and influence carbon-climate feedbacks. Consensus is emerging that microbial materials are an important constituent of stable SOM, and new conceptual and quantitative SOM models are rapidly incorporating this view. However, direct evidence demonstrating that microbial residues account for the chemistry, stability and abundance of SOM is still lacking. Further, emerging models emphasize the stabilization of microbial-derived SOM by abiotic mechanisms, while the effects of microbial physiology on microbial residue production remain unclear. Here we provide the first direct evidence that soil microbes produce …

Long-Term Warming Alters Carbohydrate Degradation Potential In Temperate Forest Soils, Grace Pold, Andrew F. Billings, Jeff L. Blanchard, Daniel B. Burkhardt, Serita D. Frey, Jerry M. Melillo, Julia Schnabel, Linda T. A. Van Diepen, Kristen M. Deangelis

Faculty Publications

As Earth's climate warms, soil carbon pools and the microbial communities that process them may change, altering the way in which carbon is recycled in soil. In this study, we used a combination of metagenomics and bacterial cultivation to evaluate the hypothesis that experimentally raising soil temperatures by 5°C for 5, 8, or 20 years increased the potential for temperate forest soil microbial communities to degrade carbohydrates. Warming decreased the proportion of carbohydrate-degrading genes in the organic horizon derived from eukaryotes and increased the fraction of genes in the mineral soil associated with Actinobacteria in all studies. Genes associated with …

Soil Microbial Biomass And Function Are Altered By 12 Years Of Crop Rotation, Marshall D. Mcdaniel, A. Stuart Grandy

Faculty Publications

Declines in plant diversity will likely reduce soil microbial biomass, alter microbial functions, and threaten the provisioning of soil ecosystem services. We examined whether increasing temporal plant biodiversity in agroecosystems (by rotating crops) can partially reverse these trends and enhance soil microbial biomass and function. We quantified seasonal patterns in soil microbial biomass, respiration rates, extracellular enzyme activity, and catabolic potential three times over one growing season in a 12-year crop rotation study at the W. K. Kellogg Biological Station LTER. Rotation treatments varied from one to five crops in a 3-year rotation cycle, but all soils were sampled under …

Whiting Events Off Southwest Florida: Remote Sensing And Field Observations, Jacqueline Long

USF Tampa Graduate Theses and Dissertations

“Whiting” is a term used to describe a sharply defined patch of water that contains high levels of suspended, fine-grained calcium carbonate (CaCO₃). These features are named for their bright (at times white) appearance when compared to surrounding waters, and have been found to occur globally, persisting for multiple consecutive days. Although whitings have been widely studied using chemical, biological, geological, and physical techniques, there has been little effort to document their spatio-temporal distributions in a systematic way, not to mention the lack of consensus on what generates whitings and allows them to persist for days to weeks …